Wall clock time and date at job start Sat Apr 11 2020 05:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.06700 * 2 1 4 4 C 1.54000 * 109.91457 * 238.79849 * 2 1 3 5 5 H 1.09002 * 110.31026 * 358.33720 * 4 2 1 6 6 N 1.46504 * 110.31047 * 120.40643 * 4 2 1 7 7 C 1.34775 * 120.00124 * 203.61241 * 6 4 2 8 8 O 1.21286 * 120.00033 * 359.97438 * 7 6 4 9 9 C 1.50695 * 119.99964 * 180.02562 * 7 6 4 10 10 H 1.09000 * 109.47914 * 304.99460 * 9 7 6 11 11 C 1.53090 * 109.48449 * 65.01917 * 9 7 6 12 12 C 1.53173 * 109.16613 * 177.58918 * 11 9 7 13 13 C 1.53173 * 109.03682 * 303.02189 * 12 11 9 14 14 C 1.53088 * 109.16588 * 56.97974 * 13 12 11 15 15 O 1.42898 * 109.42229 * 302.39717 * 14 13 12 16 16 C 1.54598 * 105.22213 * 239.36966 * 4 2 1 17 17 C 1.55092 * 102.84998 * 338.15300 * 16 4 2 18 18 N 1.47897 * 109.92057 * 121.20987 * 2 1 3 19 19 C 1.46906 * 110.99555 * 265.19650 * 18 2 1 20 20 C 1.50706 * 109.46885 * 189.99702 * 19 18 2 21 21 O 1.21292 * 119.99891 * 0.02562 * 20 19 18 22 22 N 1.34773 * 119.99925 * 179.97438 * 20 19 18 23 23 C 1.37097 * 120.00117 * 179.97438 * 22 20 19 24 24 H 1.08008 * 119.99494 * 0.02562 * 23 22 20 25 25 C 1.38944 * 120.00167 * 180.02562 * 23 22 20 26 26 N 1.31411 * 120.00220 * 0.02562 * 25 23 22 27 27 Si 1.86804 * 120.00079 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.46885 * 60.00324 * 27 25 23 29 29 H 1.48495 * 109.47024 * 179.97438 * 27 25 23 30 30 H 1.48503 * 109.47204 * 300.00338 * 27 25 23 31 31 H 1.08998 * 109.47399 * 181.20145 * 1 2 3 32 32 H 1.08997 * 109.47375 * 301.20209 * 1 2 3 33 33 H 1.09003 * 109.47606 * 61.20670 * 1 2 3 34 34 H 0.97000 * 119.99722 * 23.60811 * 6 4 2 35 35 H 1.08999 * 109.52322 * 297.50017 * 11 9 7 36 36 H 1.09006 * 109.51849 * 57.68442 * 11 9 7 37 37 H 1.09006 * 109.54150 * 62.88812 * 12 11 9 38 38 H 1.09003 * 109.54525 * 183.06181 * 12 11 9 39 39 H 1.09001 * 109.52371 * 176.88646 * 13 12 11 40 40 H 1.09002 * 109.52262 * 297.00731 * 13 12 11 41 41 H 1.09000 * 109.48419 * 62.37103 * 14 13 12 42 42 H 1.08996 * 109.48315 * 182.39466 * 14 13 12 43 43 H 1.09003 * 110.72246 * 96.45403 * 16 4 2 44 44 H 1.09003 * 110.72391 * 219.72762 * 16 4 2 45 45 H 1.09003 * 110.59460 * 278.87433 * 17 16 4 46 46 H 1.08995 * 110.83386 * 155.84768 * 17 16 4 47 47 H 1.08992 * 109.47227 * 309.99424 * 19 18 2 48 48 H 1.09001 * 109.47017 * 69.99781 * 19 18 2 49 49 H 0.97000 * 120.00096 * 0.02562 * 22 20 19 50 50 H 0.97002 * 120.00258 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9039 1.0238 0.0000 4 6 2.0545 -0.7501 -1.2385 5 1 1.2227 -1.1400 -1.8251 6 7 2.8815 0.1385 -2.0587 7 6 3.0478 -0.1170 -3.3715 8 8 2.5132 -1.0829 -3.8738 9 6 3.8990 0.7967 -4.2150 10 1 3.5352 1.8201 -4.1229 11 6 5.3518 0.7263 -3.7375 12 6 6.2203 1.6108 -4.6373 13 6 6.0631 1.1522 -6.0903 14 6 4.5829 1.2061 -6.4770 15 8 3.8278 0.3869 -5.5822 16 6 2.9074 -1.9116 -0.6785 17 6 3.2681 -1.4186 0.7470 18 7 2.0339 -0.7205 1.1892 19 6 2.3212 0.2123 2.2872 20 6 3.0561 -0.5142 3.3841 21 8 3.3155 -1.6929 3.2629 22 7 3.4261 0.1460 4.4993 23 6 4.0943 -0.5150 5.4974 24 1 4.3245 -1.5648 5.3898 25 6 4.4752 0.1655 6.6473 26 7 4.1947 1.4426 6.7785 27 14 5.3863 -0.7350 8.0070 28 1 6.6609 -1.2786 7.4730 29 1 5.6772 0.2080 9.1166 30 1 4.5455 -1.8501 8.5120 31 1 -0.3634 -1.0274 0.0215 32 1 -0.3634 0.5324 0.8790 33 1 -0.3634 0.4950 -0.9006 34 1 3.3093 0.9108 -1.6569 35 1 5.4146 1.0805 -2.7086 36 1 5.7033 -0.3041 -3.7911 37 1 5.9007 2.6489 -4.5460 38 1 7.2644 1.5229 -4.3367 39 1 6.6346 1.8110 -6.7441 40 1 6.4301 0.1308 -6.1916 41 1 4.2281 2.2349 -6.4147 42 1 4.4599 0.8404 -7.4964 43 1 2.3238 -2.8311 -0.6322 44 1 3.8064 -2.0540 -1.2782 45 1 4.1097 -0.7268 0.7119 46 1 3.4904 -2.2598 1.4035 47 1 2.9383 1.0306 1.9166 48 1 1.3856 0.6113 2.6791 49 1 3.2190 1.0886 4.5961 50 1 4.4610 1.9178 7.5811 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264136757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:05 Heat of formation + Delta-G solvation = -138.277346 kcal Electronic energy + Delta-G solvation = -30251.880801 eV Core-core repulsion = 26084.807954 eV Total energy + Delta-G solvation = -4167.072847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64644 -40.75183 -39.74550 -38.84910 -36.06913 -35.42019 -34.57268 -33.35406 -32.89550 -32.24240 -31.64252 -28.20345 -27.12364 -25.83118 -25.70027 -24.85803 -22.80944 -21.58395 -21.48003 -21.16399 -20.84341 -19.84673 -18.55464 -18.05011 -17.52696 -16.98476 -16.81275 -16.53255 -16.31616 -16.23242 -16.08247 -15.70006 -15.47865 -15.31564 -15.12020 -15.01801 -14.56422 -14.22344 -13.93011 -13.76150 -13.64899 -13.59370 -13.50848 -12.97070 -12.93502 -12.66893 -12.57754 -12.45453 -12.40425 -12.30729 -12.23966 -12.15906 -12.10734 -11.96919 -11.72386 -11.44492 -11.41581 -10.78683 -10.49722 -10.28456 -10.07712 -9.98672 -9.33390 -8.46076 -5.94181 1.39538 1.42033 1.48504 1.52260 1.74322 2.05515 2.28798 2.79530 3.03400 3.21150 3.28008 3.46965 3.56604 3.72177 3.77559 3.87204 4.00347 4.02158 4.04535 4.17437 4.19514 4.28548 4.33707 4.44628 4.46958 4.47834 4.58202 4.61950 4.75703 4.76972 4.81850 4.83250 4.91831 4.99726 5.02042 5.05977 5.07727 5.14624 5.26551 5.33797 5.36222 5.41086 5.45531 5.86335 5.96588 6.08870 6.13256 6.46969 6.61778 7.14071 7.14722 7.56889 8.13185 8.70979 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015796 B = 0.002283 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.191791 B =12264.212267 C =13264.900810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.061 3.939 3 H 0.080 0.920 4 C 0.147 3.853 5 H 0.092 0.908 6 N -0.705 5.705 7 C 0.518 3.482 8 O -0.568 6.568 9 C 0.078 3.922 10 H 0.112 0.888 11 C -0.145 4.145 12 C -0.119 4.119 13 C -0.158 4.158 14 C 0.053 3.947 15 O -0.391 6.391 16 C -0.126 4.126 17 C 0.046 3.954 18 N -0.505 5.505 19 C 0.050 3.950 20 C 0.439 3.561 21 O -0.614 6.614 22 N -0.572 5.572 23 C -0.331 4.331 24 H 0.078 0.922 25 C -0.012 4.012 26 N -0.919 5.919 27 Si 0.990 3.010 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.274 1.274 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.413 0.587 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.035 0.965 46 H 0.078 0.922 47 H 0.075 0.925 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.512 8.657 -23.168 24.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.048 4.048 3 H 0.098 0.902 4 C 0.042 3.958 5 H 0.110 0.890 6 N -0.359 5.359 7 C 0.305 3.695 8 O -0.446 6.446 9 C 0.017 3.983 10 H 0.130 0.870 11 C -0.183 4.183 12 C -0.156 4.156 13 C -0.195 4.195 14 C -0.023 4.023 15 O -0.310 6.310 16 C -0.165 4.165 17 C -0.082 4.082 18 N -0.231 5.231 19 C -0.081 4.081 20 C 0.226 3.774 21 O -0.501 6.501 22 N -0.209 5.209 23 C -0.461 4.461 24 H 0.096 0.904 25 C -0.212 4.212 26 N -0.560 5.560 27 Si 0.814 3.186 28 H -0.197 1.197 29 H -0.195 1.195 30 H -0.199 1.199 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.098 0.902 39 H 0.115 0.885 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.122 0.878 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.053 0.947 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.128 0.872 49 H 0.230 0.770 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.160 6.815 -23.309 24.285 hybrid contribution 1.302 0.826 1.025 1.851 sum 1.142 7.641 -22.284 23.585 Atomic orbital electron populations 1.21713 0.92049 1.02547 1.02511 1.22749 0.97760 0.96646 0.87649 0.90229 1.21732 0.93278 0.89841 0.90974 0.88968 1.45931 1.51582 1.30400 1.07996 1.20738 0.80679 0.85560 0.82520 1.90710 1.49663 1.30958 1.73224 1.21966 0.95460 0.97706 0.83138 0.87029 1.22159 0.92923 1.01597 1.01593 1.21612 1.00456 0.99671 0.93894 1.22217 0.97006 1.02566 0.97731 1.22890 0.90624 0.95432 0.93344 1.88021 1.71198 1.55986 1.15779 1.22891 1.00041 0.98583 0.95006 1.23252 0.90543 0.99227 0.95132 1.64566 1.27754 1.25262 1.05470 1.21998 1.00861 0.93874 0.91402 1.20733 0.83920 0.87941 0.84780 1.90453 1.60998 1.17915 1.80695 1.41899 1.50994 1.12376 1.15628 1.19593 1.33700 0.95841 0.96930 0.90372 1.25987 0.98393 0.96481 1.00305 1.69656 1.47396 1.09010 1.29963 0.85034 0.78447 0.77850 0.77292 1.19746 1.19526 1.19889 0.92663 0.91735 0.90612 0.74941 0.88623 0.92462 0.89648 0.90187 0.88527 0.92318 0.91129 0.87847 0.90734 0.91096 0.94717 0.90343 0.90744 0.87172 0.76969 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.32 71.98 0.67 -1.92 16 2 C 0.06 1.34 2.86 45.06 0.13 1.47 16 3 H 0.08 1.42 7.04 -2.39 -0.02 1.40 16 4 C 0.15 3.42 2.95 45.87 0.14 3.55 16 5 H 0.09 2.37 7.14 -2.39 -0.02 2.35 16 6 N -0.71 -13.27 5.03 -438.35 -2.21 -15.47 16 7 C 0.52 12.08 7.18 87.66 0.63 12.71 16 8 O -0.57 -19.00 16.18 15.93 0.26 -18.75 16 9 C 0.08 1.32 3.05 29.88 0.09 1.42 16 10 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 11 C -0.14 -1.96 5.37 30.68 0.16 -1.80 16 12 C -0.12 -1.13 6.03 30.71 0.19 -0.94 16 13 C -0.16 -1.62 6.14 30.68 0.19 -1.43 16 14 C 0.05 0.67 6.84 72.01 0.49 1.16 16 15 O -0.39 -8.43 9.94 -130.00 -1.29 -9.72 16 16 C -0.13 -3.51 6.80 31.85 0.22 -3.29 16 17 C 0.05 1.52 5.31 86.70 0.46 1.98 16 18 N -0.51 -15.59 4.89 -862.29 -4.22 -19.81 16 19 C 0.05 1.62 5.52 85.56 0.47 2.09 16 20 C 0.44 20.09 7.49 87.66 0.66 20.75 16 21 O -0.61 -32.71 13.09 -3.07 -0.04 -32.75 16 22 N -0.57 -28.42 5.29 -306.98 -1.62 -30.05 16 23 C -0.33 -18.40 9.68 84.04 0.81 -17.59 16 24 H 0.08 4.65 7.16 -2.91 -0.02 4.62 16 25 C -0.01 -0.62 5.50 84.92 0.47 -0.15 16 26 N -0.92 -48.59 13.05 21.66 0.28 -48.31 16 27 Si 0.99 42.36 29.55 68.60 2.03 44.39 16 28 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 29 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 30 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.41 5.31 8.16 -92.71 -0.76 4.56 16 35 H 0.10 0.98 7.99 -2.39 -0.02 0.96 16 36 H 0.06 1.03 8.14 -2.38 -0.02 1.02 16 37 H 0.08 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.07 1.96 8.05 -2.39 -0.02 1.94 16 45 H 0.03 1.12 8.02 -2.39 -0.02 1.10 16 46 H 0.08 3.29 5.96 -2.39 -0.01 3.28 16 47 H 0.07 2.04 7.81 -2.39 -0.02 2.02 16 48 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.40 18.63 7.90 -92.71 -0.73 17.90 16 50 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -74.31 397.77 -1.58 -75.88 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.54 Total: 36.57 kcal Atomic # 6 Polarization: 12.23 SS G_CDS: 5.77 Total: 18.01 kcal Atomic # 7 Polarization: -105.87 SS G_CDS: -7.77 Total: -113.63 kcal Atomic # 8 Polarization: -60.14 SS G_CDS: -1.07 Total: -61.22 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -74.31 -1.58 -75.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264136757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.394 kcal (2) G-P(sol) polarization free energy of solvation -74.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds