Wall clock time and date at job start Sat Apr 11 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50705 * 119.99983 * 2 1 4 4 C 1.52994 * 109.47228 * 119.99817 * 3 2 1 5 5 O 1.42900 * 109.47007 * 359.97438 * 3 2 1 6 6 C 1.52998 * 109.46753 * 240.00064 * 3 2 1 7 7 C 1.50702 * 109.47568 * 60.12357 * 6 3 2 8 8 O 1.21278 * 119.99795 * 354.31610 * 7 6 3 9 9 N 1.34771 * 120.00168 * 174.31043 * 7 6 3 10 10 C 1.46499 * 119.99863 * 180.27610 * 9 7 6 11 11 H 1.09000 * 110.27562 * 325.42495 * 10 9 7 12 12 C 1.54597 * 110.31010 * 87.51624 * 10 9 7 13 13 C 1.55198 * 102.80369 * 96.97878 * 12 10 9 14 14 N 1.48533 * 103.23878 * 37.43479 * 13 12 10 15 15 C 1.46897 * 111.00432 * 200.25914 * 14 13 12 16 16 C 1.50706 * 109.46664 * 287.39437 * 15 14 13 17 17 O 1.21287 * 120.00234 * 0.02562 * 16 15 14 18 18 N 1.34776 * 119.99840 * 179.97438 * 16 15 14 19 19 C 1.37091 * 119.99981 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00523 * 359.97438 * 19 18 16 21 21 C 1.38952 * 120.00030 * 180.02562 * 19 18 16 22 22 N 1.31414 * 120.00139 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 359.97438 * 21 19 18 24 24 H 1.48506 * 109.47282 * 89.99979 * 23 21 19 25 25 H 1.48500 * 109.47510 * 209.99812 * 23 21 19 26 26 H 1.48503 * 109.47271 * 330.00276 * 23 21 19 27 27 C 1.47906 * 105.81953 * 320.77476 * 14 13 12 28 28 H 1.09002 * 109.91393 * 265.97933 * 27 14 13 29 29 C 1.52996 * 109.92099 * 144.68087 * 27 14 13 30 30 H 1.07996 * 120.00135 * 180.02562 * 1 2 3 31 31 H 1.07999 * 119.99741 * 359.97438 * 1 2 3 32 32 H 1.08003 * 120.00221 * 180.02562 * 2 1 3 33 33 H 1.08996 * 109.47031 * 184.93260 * 4 3 2 34 34 H 1.08998 * 109.47322 * 304.93906 * 4 3 2 35 35 H 1.09005 * 109.46868 * 64.93912 * 4 3 2 36 36 H 0.96709 * 114.00162 * 300.00003 * 5 3 2 37 37 H 1.09004 * 109.47359 * 300.12095 * 6 3 2 38 38 H 1.09001 * 109.47023 * 180.12775 * 6 3 2 39 39 H 0.96999 * 120.00372 * 0.02562 * 9 7 6 40 40 H 1.08993 * 110.72617 * 215.31699 * 12 10 9 41 41 H 1.08997 * 110.72286 * 338.60231 * 12 10 9 42 42 H 1.09000 * 110.68476 * 278.98837 * 13 12 10 43 43 H 1.09000 * 110.78637 * 155.93276 * 13 12 10 44 44 H 1.08999 * 109.47246 * 47.39556 * 15 14 13 45 45 H 1.08999 * 109.47064 * 167.39471 * 15 14 13 46 46 H 0.97007 * 119.99560 * 0.02562 * 18 16 15 47 47 H 0.97002 * 119.99855 * 179.97438 * 22 21 19 48 48 H 1.08996 * 109.47155 * 302.40586 * 29 27 14 49 49 H 1.08996 * 109.47023 * 62.40884 * 29 27 14 50 50 H 1.08999 * 109.46981 * 182.40649 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2492 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2493 7 6 2.0764 1.3093 -2.4798 8 8 0.8872 1.0973 -2.3716 9 7 2.6229 1.4763 -3.7004 10 6 1.7793 1.4077 -4.8961 11 1 0.9840 0.6756 -4.7558 12 6 1.1799 2.7976 -5.2105 13 6 2.1507 3.3559 -6.2849 14 7 2.4881 2.1570 -7.0943 15 6 3.7340 2.3622 -7.8451 16 6 3.4851 3.3249 -8.9775 17 8 2.3790 3.7943 -9.1426 18 7 4.4920 3.6652 -9.8063 19 6 4.2658 4.5413 -10.8361 20 1 3.2807 4.9586 -10.9836 21 6 5.3038 4.8917 -11.6909 22 7 5.0868 5.7312 -12.6784 23 14 7.0076 4.1694 -11.4363 24 1 7.1301 2.9063 -12.2076 25 1 8.0310 5.1374 -11.9062 26 1 7.2162 3.8900 -9.9928 27 6 2.6280 1.0452 -6.1289 28 1 3.6732 0.9334 -5.8403 29 6 2.1137 -0.2540 -6.7521 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.4205 2.3650 1.2945 34 1 2.3277 1.2407 2.1370 35 1 3.7078 0.6107 1.2061 36 1 0.5438 2.4030 -0.7659 37 1 3.6500 0.5564 -1.2504 38 1 3.4898 2.3291 -1.2482 39 1 3.5740 1.6456 -3.7869 40 1 0.1718 2.7007 -5.6135 41 1 1.1820 3.4285 -4.3217 42 1 3.0449 3.7692 -5.8183 43 1 1.6563 4.1082 -6.8995 44 1 4.4953 2.7714 -7.1809 45 1 4.0770 1.4089 -8.2473 46 1 5.3768 3.2900 -9.6740 47 1 5.8116 5.9760 -13.2749 48 1 1.0751 -0.1248 -7.0563 49 1 2.7192 -0.5037 -7.6233 50 1 2.1804 -1.0592 -6.0205 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264137839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:15 Heat of formation + Delta-G solvation = -114.794646 kcal Electronic energy + Delta-G solvation = -30142.121526 eV Core-core repulsion = 25976.066966 eV Total energy + Delta-G solvation = -4166.054561 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.56494 -40.66194 -39.61797 -38.36987 -36.02940 -35.27622 -33.92173 -33.74599 -32.67353 -32.29288 -31.74926 -29.26245 -28.07304 -26.15713 -25.65271 -23.52340 -22.63352 -21.47144 -21.33910 -21.06715 -20.43883 -20.19237 -18.19193 -18.03643 -17.60316 -17.46429 -16.79148 -16.60496 -16.37312 -16.20060 -16.09764 -15.44339 -15.22890 -15.01962 -14.99072 -14.56417 -14.39072 -14.17136 -13.85816 -13.63609 -13.57291 -13.37129 -13.06350 -12.99339 -12.98176 -12.90319 -12.71531 -12.62155 -12.42685 -12.37260 -12.32095 -12.13349 -11.96476 -11.92490 -11.73618 -11.48008 -11.06063 -10.93386 -10.40402 -10.22904 -10.12334 -9.93457 -9.33153 -8.39871 -6.00730 1.30026 1.36796 1.45341 1.50206 1.66143 1.98707 2.11339 2.24202 2.66103 3.15350 3.22587 3.33867 3.45709 3.70527 3.71650 3.85207 3.92765 4.02676 4.17026 4.21393 4.30320 4.36240 4.38142 4.45164 4.47791 4.49189 4.62931 4.72880 4.74690 4.82006 4.88465 4.92157 4.96823 5.03080 5.04944 5.12142 5.16116 5.31233 5.38307 5.47907 5.54636 5.75256 5.88029 5.95604 5.96819 6.07866 6.54688 6.61651 6.71644 6.90664 7.28092 7.41987 8.00491 8.77945 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022760 B = 0.002104 C = 0.002057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.930840 B =13307.561434 C =13606.638797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.186 4.186 3 C 0.167 3.833 4 C -0.134 4.134 5 O -0.578 6.578 6 C -0.161 4.161 7 C 0.512 3.488 8 O -0.565 6.565 9 N -0.711 5.711 10 C 0.150 3.850 11 H 0.091 0.909 12 C -0.122 4.122 13 C 0.043 3.957 14 N -0.513 5.513 15 C 0.047 3.953 16 C 0.452 3.548 17 O -0.608 6.608 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.052 0.948 21 C -0.019 4.019 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.062 3.938 28 H 0.086 0.914 29 C -0.132 4.132 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.381 0.619 37 H 0.134 0.866 38 H 0.117 0.883 39 H 0.413 0.587 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.121 0.879 46 H 0.389 0.611 47 H 0.278 0.722 48 H 0.048 0.952 49 H 0.060 0.940 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.193 -16.228 28.192 32.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.204 4.204 3 C 0.126 3.874 4 C -0.191 4.191 5 O -0.388 6.388 6 C -0.200 4.200 7 C 0.300 3.700 8 O -0.444 6.444 9 N -0.363 5.363 10 C 0.044 3.956 11 H 0.110 0.890 12 C -0.161 4.161 13 C -0.084 4.084 14 N -0.238 5.238 15 C -0.084 4.084 16 C 0.239 3.761 17 O -0.491 6.491 18 N -0.235 5.235 19 C -0.455 4.455 20 H 0.071 0.929 21 C -0.217 4.217 22 N -0.578 5.578 23 Si 0.787 3.213 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.152 1.152 27 C -0.046 4.046 28 H 0.104 0.896 29 C -0.190 4.190 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.142 0.858 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.116 0.884 36 H 0.233 0.767 37 H 0.152 0.848 38 H 0.135 0.865 39 H 0.250 0.750 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.103 0.897 45 H 0.139 0.861 46 H 0.225 0.775 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.079 0.921 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.572 -15.929 28.142 32.440 hybrid contribution 1.092 0.511 -1.001 1.567 sum 3.664 -15.419 27.141 31.430 Atomic orbital electron populations 1.23646 0.96663 1.01352 0.98952 1.23450 0.96610 0.98651 1.01710 1.20101 0.88119 0.84436 0.94760 1.21748 0.98791 1.03728 0.94789 1.86445 1.51496 1.49848 1.51017 1.22466 0.99376 1.07388 0.90798 1.21110 0.88768 0.74845 0.85253 1.90688 1.17346 1.49577 1.86837 1.46087 1.12532 1.72736 1.04974 1.21606 0.93234 0.96909 0.83825 0.89050 1.22832 0.98936 0.96527 0.97810 1.23190 0.98406 0.93137 0.93706 1.64331 1.31161 1.04707 1.23590 1.22022 0.92305 0.99726 0.94345 1.20920 0.84451 0.85272 0.85435 1.90547 1.25472 1.58191 1.74922 1.42022 1.11261 1.42469 1.27791 1.18968 0.97911 1.22055 1.06570 0.92942 1.26158 1.03952 0.96866 0.94728 1.69817 1.35298 1.34859 1.17785 0.85339 0.76232 0.78870 0.80885 1.18185 1.20207 1.15153 1.22685 0.99598 0.92261 0.90046 0.89646 1.21723 1.01465 0.94746 1.01059 0.88436 0.89518 0.85792 0.91348 0.92483 0.88445 0.76712 0.84804 0.86505 0.75045 0.91353 0.90401 0.92890 0.92734 0.89670 0.86142 0.77503 0.91228 0.93270 0.92096 0.90413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 12.60 67.78 0.85 -2.22 16 2 C -0.19 -2.80 7.47 25.65 0.19 -2.61 16 3 C 0.17 2.28 1.08 -11.54 -0.01 2.26 16 4 C -0.13 -1.30 8.83 71.98 0.64 -0.66 16 5 O -0.58 -11.50 11.92 -133.17 -1.59 -13.09 16 6 C -0.16 -1.45 4.97 29.85 0.15 -1.30 16 7 C 0.51 7.65 7.31 87.66 0.64 8.29 16 8 O -0.57 -12.36 11.63 12.79 0.15 -12.21 16 9 N -0.71 -9.06 5.07 -438.37 -2.22 -11.29 16 10 C 0.15 2.78 2.95 45.87 0.14 2.92 16 11 H 0.09 1.95 7.15 -2.39 -0.02 1.93 16 12 C -0.12 -2.87 6.80 31.89 0.22 -2.66 16 13 C 0.04 1.24 5.94 86.74 0.52 1.75 16 14 N -0.51 -14.43 4.54 -862.05 -3.91 -18.34 16 15 C 0.05 1.35 5.19 85.56 0.44 1.80 16 16 C 0.45 19.96 7.61 87.66 0.67 20.62 16 17 O -0.61 -33.58 14.64 -3.05 -0.04 -33.63 16 18 N -0.59 -27.39 5.09 -306.99 -1.56 -28.95 16 19 C -0.33 -18.98 10.16 84.04 0.85 -18.12 16 20 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -1.04 5.50 84.93 0.47 -0.57 16 22 N -0.94 -56.48 13.96 21.66 0.30 -56.18 16 23 Si 0.97 38.00 27.74 68.60 1.90 39.91 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 26 H -0.23 -7.36 6.52 99.48 0.65 -6.71 16 27 C 0.06 1.16 2.83 45.06 0.13 1.29 16 28 H 0.09 1.12 7.24 -2.39 -0.02 1.10 16 29 C -0.13 -2.40 9.32 71.98 0.67 -1.73 16 30 H 0.10 1.59 8.06 -2.91 -0.02 1.56 16 31 H 0.09 1.80 6.41 -2.91 -0.02 1.78 16 32 H 0.12 1.42 8.06 -2.91 -0.02 1.39 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 36 H 0.38 8.02 5.79 -74.05 -0.43 7.59 16 37 H 0.13 0.44 8.14 -2.38 -0.02 0.42 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.41 3.03 8.31 -92.71 -0.77 2.26 16 40 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 1.74 8.05 -2.39 -0.02 1.72 16 42 H 0.05 1.33 7.81 -2.39 -0.02 1.31 16 43 H 0.05 2.07 7.10 -2.39 -0.02 2.05 16 44 H 0.09 1.89 7.83 -2.39 -0.02 1.87 16 45 H 0.12 2.76 8.08 -2.39 -0.02 2.74 16 46 H 0.39 14.62 5.76 -92.70 -0.53 14.09 16 47 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 48 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -81.78 398.50 -1.25 -83.03 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: -0.83 Total: 41.69 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 6.56 Total: 9.07 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -7.39 Total: -114.76 kcal Atomic # 8 Polarization: -57.45 SS G_CDS: -1.48 Total: -58.93 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.90 Total: 39.91 kcal Total: -81.78 -1.25 -83.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264137839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.769 kcal (2) G-P(sol) polarization free energy of solvation -81.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds