Wall clock time and date at job start Sat Apr 11 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.41981 * 2 1 4 4 O 1.44782 * 110.49094 * 122.45727 * 2 1 3 5 5 C 1.44424 * 105.29951 * 159.32478 * 4 2 1 6 6 C 1.54478 * 104.80098 * 319.45436 * 5 4 2 7 7 C 1.54478 * 110.37269 * 237.69449 * 2 1 3 8 8 H 1.09001 * 110.51185 * 98.40250 * 7 2 1 9 9 C 1.50703 * 110.50954 * 335.83256 * 7 2 1 10 10 O 1.21280 * 119.99695 * 279.89314 * 9 7 2 11 11 N 1.34772 * 119.99678 * 99.89556 * 9 7 2 12 12 C 1.46511 * 119.99821 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47170 * 180.02562 * 12 11 9 14 14 N 1.46897 * 109.46942 * 179.97438 * 13 12 11 15 15 C 1.46902 * 110.99921 * 169.99727 * 14 13 12 16 16 C 1.50704 * 109.47162 * 289.04655 * 15 14 13 17 17 O 1.21289 * 120.00156 * 355.21608 * 16 15 14 18 18 N 1.34774 * 120.00034 * 175.20935 * 16 15 14 19 19 C 1.37097 * 120.00310 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99730 * 0.02562 * 19 18 16 21 21 C 1.38947 * 120.00267 * 179.97438 * 19 18 16 22 22 N 1.31418 * 119.99940 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00154 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47346 * 60.00226 * 23 21 19 25 25 H 1.48504 * 109.47254 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.47248 * 300.00034 * 23 21 19 27 27 C 1.46897 * 111.00114 * 293.95491 * 14 13 12 28 28 C 1.53001 * 117.50126 * 102.38121 * 27 14 13 29 29 C 1.53002 * 117.50023 * 171.04182 * 27 14 13 30 30 H 1.09000 * 109.47190 * 188.24283 * 1 2 3 31 31 H 1.09000 * 109.46904 * 308.23801 * 1 2 3 32 32 H 1.08997 * 109.47153 * 68.24111 * 1 2 3 33 33 H 1.08994 * 110.37276 * 200.62377 * 5 4 2 34 34 H 1.09002 * 110.46220 * 78.33044 * 5 4 2 35 35 H 1.08993 * 110.51218 * 265.33274 * 6 5 4 36 36 H 1.09006 * 110.51168 * 142.62017 * 6 5 4 37 37 H 0.96993 * 120.00500 * 0.02562 * 11 9 7 38 38 H 1.08994 * 109.46947 * 59.99655 * 12 11 9 39 39 H 1.09004 * 109.46564 * 300.00024 * 12 11 9 40 40 H 1.08998 * 109.46821 * 59.99771 * 13 12 11 41 41 H 1.08999 * 109.46857 * 300.00000 * 13 12 11 42 42 H 1.08996 * 109.47020 * 49.04664 * 15 14 13 43 43 H 1.09002 * 109.47178 * 169.04379 * 15 14 13 44 44 H 0.97006 * 119.99985 * 0.02562 * 18 16 15 45 45 H 0.96994 * 120.00074 * 179.97438 * 22 21 19 46 46 H 1.08998 * 115.54617 * 316.70954 * 27 14 13 47 47 H 1.08998 * 117.49904 * 215.00025 * 28 27 14 48 48 H 1.09001 * 117.49667 * 0.02562 * 28 27 14 49 49 H 1.09008 * 117.49543 * 359.97438 * 29 27 14 50 50 H 1.08991 * 117.50147 * 144.99042 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0216 0.0000 4 8 2.0368 -0.7278 1.1444 5 6 3.3911 -1.0896 0.7966 6 6 3.3193 -1.5055 -0.6894 7 6 2.0678 -0.7739 -1.2240 8 1 2.3406 -0.0839 -2.0225 9 6 1.0443 -1.7665 -1.7124 10 8 0.9168 -2.8329 -1.1490 11 7 0.2710 -1.4691 -2.7754 12 6 -0.7244 -2.4338 -3.2499 13 6 -1.4604 -1.8539 -4.4594 14 7 -2.4580 -2.8214 -4.9355 15 6 -3.3430 -2.2145 -5.9387 16 6 -4.2553 -1.2201 -5.2679 17 8 -4.2366 -1.0977 -4.0614 18 7 -5.0919 -0.4667 -6.0087 19 6 -5.9223 0.4376 -5.3985 20 1 -5.9057 0.5465 -4.3241 21 6 -6.7844 1.2147 -6.1623 22 7 -6.8043 1.0826 -7.4697 23 14 -7.9153 2.4473 -5.3309 24 1 -7.1017 3.4412 -4.5856 25 1 -8.7291 3.1444 -6.3591 26 1 -8.8145 1.7360 -4.3871 27 6 -1.8096 -4.0279 -5.4664 28 6 -1.7988 -5.2733 -4.5777 29 6 -2.7065 -5.2192 -5.8091 30 1 -0.3633 -1.0170 0.1473 31 1 -0.3633 0.6361 0.8072 32 1 -0.3633 0.3809 -0.9544 33 1 3.7296 -1.9255 1.4087 34 1 4.0572 -0.2356 0.9199 35 1 3.1978 -2.5850 -0.7783 36 1 4.2112 -1.1754 -1.2219 37 1 0.3733 -0.6164 -3.2262 38 1 -1.4393 -2.6396 -2.4534 39 1 -0.2251 -3.3589 -3.5381 40 1 -0.7451 -1.6484 -5.2557 41 1 -1.9596 -0.9286 -4.1716 42 1 -2.7425 -1.7056 -6.6926 43 1 -3.9404 -2.9924 -6.4144 44 1 -5.1071 -0.5647 -6.9737 45 1 -7.4064 1.6248 -8.0029 46 1 -0.9399 -3.8541 -6.0999 47 1 -0.9219 -5.9189 -4.6266 48 1 -2.2731 -5.1975 -3.5992 49 1 -3.7776 -5.1078 -5.6402 50 1 -2.4268 -5.8291 -6.6680 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558742.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:06 Heat of formation + Delta-G solvation = -110.121987 kcal Electronic energy + Delta-G solvation = -30109.350650 eV Core-core repulsion = 25943.498711 eV Total energy + Delta-G solvation = -4165.851939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.63750 -40.53402 -39.43626 -38.86345 -36.33074 -35.92855 -34.69051 -33.56049 -33.22893 -32.49213 -30.65062 -28.13764 -27.21562 -25.89763 -24.20912 -23.24661 -23.09676 -22.80282 -21.62013 -21.02460 -20.60431 -19.81493 -18.43662 -17.87547 -17.57970 -17.11745 -16.96297 -16.65058 -16.52639 -16.46115 -16.11096 -15.87619 -15.76465 -15.57661 -14.99923 -14.69459 -14.58494 -14.14920 -13.90796 -13.83338 -13.51189 -13.44859 -13.28855 -13.07945 -12.93824 -12.89718 -12.51188 -12.42532 -12.39222 -12.29662 -12.26091 -12.12811 -11.99249 -11.93427 -11.46220 -11.36079 -11.13259 -10.96179 -10.65446 -10.27385 -10.12109 -9.98322 -9.25381 -8.44989 -5.93172 1.39710 1.42006 1.52199 1.55135 1.98975 2.08034 2.29378 2.70209 2.88940 2.92411 3.22330 3.38880 3.45404 3.61379 3.80136 3.87033 3.99643 4.07669 4.09922 4.11964 4.19681 4.27794 4.31917 4.33659 4.36243 4.44941 4.46862 4.52172 4.56348 4.58450 4.77005 4.83439 4.84142 4.88322 4.90047 4.97835 4.99173 5.10056 5.12222 5.13721 5.34610 5.36883 5.42275 5.83970 5.87256 6.05857 6.22772 6.51463 6.62946 7.15237 7.21941 7.59178 8.15331 8.72174 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010449 B = 0.002721 C = 0.002242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2679.128241 B =10289.232126 C =12484.505400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.088 3.912 3 H 0.114 0.886 4 O -0.401 6.401 5 C 0.042 3.958 6 C -0.138 4.138 7 C -0.140 4.140 8 H 0.143 0.857 9 C 0.523 3.477 10 O -0.580 6.580 11 N -0.717 5.717 12 C 0.144 3.856 13 C 0.062 3.938 14 N -0.508 5.508 15 C 0.064 3.936 16 C 0.441 3.559 17 O -0.614 6.614 18 N -0.575 5.575 19 C -0.330 4.330 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.275 1.275 27 C -0.006 4.006 28 C -0.161 4.161 29 C -0.162 4.162 30 H 0.033 0.967 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.413 0.587 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.077 0.923 49 H 0.084 0.916 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.822 -3.813 3.086 22.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 H 0.132 0.868 4 O -0.321 6.321 5 C -0.034 4.034 6 C -0.176 4.176 7 C -0.161 4.161 8 H 0.161 0.839 9 C 0.310 3.690 10 O -0.460 6.460 11 N -0.369 5.369 12 C 0.019 3.981 13 C -0.066 4.066 14 N -0.233 5.233 15 C -0.066 4.066 16 C 0.229 3.771 17 O -0.499 6.499 18 N -0.212 5.212 19 C -0.459 4.459 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.813 3.187 24 H -0.196 1.196 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.114 4.114 28 C -0.199 4.199 29 C -0.199 4.199 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.135 0.865 37 H 0.250 0.750 38 H 0.056 0.944 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.125 0.875 47 H 0.132 0.868 48 H 0.095 0.905 49 H 0.102 0.898 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 21.203 -4.584 4.717 22.199 hybrid contribution -0.643 1.012 -1.045 1.591 sum 20.560 -3.571 3.672 21.188 Atomic orbital electron populations 1.21942 0.94310 1.01703 1.03595 1.23100 0.94556 0.96213 0.83115 0.86796 1.89222 1.28898 1.75015 1.38930 1.23586 0.83746 1.01083 0.94984 1.22961 0.96919 1.01099 0.96601 1.22922 0.94777 0.97487 1.00929 0.83947 1.20806 0.81749 0.87562 0.78842 1.90688 1.70543 1.27208 1.57523 1.45930 1.37507 1.21345 1.32153 1.20929 0.89677 0.92031 0.95441 1.22084 0.93105 0.95374 0.96080 1.61038 1.19553 1.05967 1.36715 1.21659 0.95132 0.96965 0.92867 1.20785 0.84197 0.84473 0.87679 1.90504 1.72029 1.71406 1.16000 1.41926 1.34973 1.34806 1.09535 1.19576 1.17003 1.15932 0.93416 0.90456 1.25975 0.99211 0.99987 0.95982 1.69661 1.39475 1.41912 1.05107 0.85048 0.77936 0.77941 0.77785 1.19576 1.19539 1.20047 1.22575 1.00091 0.85748 1.02959 1.23063 1.02444 0.99017 0.95395 1.23102 0.97349 0.99528 0.99960 0.94745 0.90899 0.90000 0.89015 0.89305 0.91709 0.86472 0.75000 0.94375 0.91182 0.92234 0.91665 0.90918 0.87463 0.77057 0.91357 0.87503 0.86824 0.90455 0.89787 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 8.56 71.98 0.62 -3.11 16 2 C 0.09 1.66 3.85 31.10 0.12 1.78 16 3 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 4 O -0.40 -9.64 11.36 -148.98 -1.69 -11.33 16 5 C 0.04 0.67 7.63 72.48 0.55 1.22 16 6 C -0.14 -2.07 6.59 31.61 0.21 -1.87 16 7 C -0.14 -2.32 3.42 -10.52 -0.04 -2.36 16 8 H 0.14 1.19 8.12 -2.39 -0.02 1.17 16 9 C 0.52 13.20 4.78 87.66 0.42 13.62 16 10 O -0.58 -20.31 15.75 -3.03 -0.05 -20.36 16 11 N -0.72 -16.35 5.32 -463.04 -2.46 -18.81 16 12 C 0.14 4.08 5.58 86.38 0.48 4.56 16 13 C 0.06 1.78 4.71 86.30 0.41 2.18 16 14 N -0.51 -15.83 4.25 -875.53 -3.72 -19.56 16 15 C 0.06 2.15 5.42 85.56 0.46 2.62 16 16 C 0.44 20.45 7.31 87.66 0.64 21.09 16 17 O -0.61 -33.31 14.64 -3.06 -0.04 -33.36 16 18 N -0.57 -28.83 5.29 -306.99 -1.62 -30.46 16 19 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 22 N -0.92 -49.01 13.05 21.66 0.28 -48.72 16 23 Si 0.99 42.58 29.55 68.60 2.03 44.60 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 27 C -0.01 -0.13 4.20 44.92 0.19 0.06 16 28 C -0.16 -3.68 9.71 30.62 0.30 -3.38 16 29 C -0.16 -3.47 9.67 30.62 0.30 -3.17 16 30 H 0.03 1.06 7.20 -2.39 -0.02 1.04 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.08 1.76 7.81 -2.39 -0.02 1.74 16 33 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 1.34 7.04 -2.39 -0.02 1.32 16 36 H 0.12 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.41 6.86 8.45 -92.71 -0.78 6.08 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.07 1.94 6.84 -2.38 -0.02 1.92 16 40 H 0.06 1.36 8.11 -2.39 -0.02 1.34 16 41 H 0.06 2.32 6.42 -2.39 -0.02 2.31 16 42 H 0.07 2.09 8.07 -2.39 -0.02 2.07 16 43 H 0.11 3.27 7.10 -2.39 -0.02 3.25 16 44 H 0.40 18.84 7.90 -92.70 -0.73 18.11 16 45 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 46 H 0.11 2.09 8.12 -2.39 -0.02 2.07 16 47 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.08 2.11 7.86 -2.38 -0.02 2.09 16 50 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -76.97 404.92 -1.90 -78.88 By element: Atomic # 1 Polarization: 44.22 SS G_CDS: -0.56 Total: 43.66 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: 5.94 Total: 15.46 kcal Atomic # 7 Polarization: -110.02 SS G_CDS: -7.52 Total: -117.55 kcal Atomic # 8 Polarization: -63.27 SS G_CDS: -1.79 Total: -65.05 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -76.97 -1.90 -78.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558742.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.246 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds