Wall clock time and date at job start Sat Apr 11 2020 05:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.86982 * 2 1 4 4 O 1.43745 * 109.88284 * 238.98768 * 2 1 3 5 5 C 1.44572 * 106.87100 * 214.17236 * 4 2 1 6 6 C 1.54989 * 103.58814 * 39.87680 * 5 4 2 7 7 C 1.54103 * 109.87825 * 120.99745 * 2 1 3 8 8 H 1.08998 * 110.49052 * 2.78765 * 7 2 1 9 9 C 1.50702 * 110.48976 * 240.26454 * 7 2 1 10 10 O 1.21282 * 119.99968 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99778 * 180.02562 * 9 7 2 12 12 C 1.46507 * 119.99643 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46680 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46822 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99906 * 190.00008 * 14 13 12 16 16 C 1.50701 * 109.47156 * 162.31757 * 15 14 13 17 17 O 1.21300 * 119.99936 * 1.34067 * 16 15 14 18 18 N 1.34779 * 120.00122 * 181.34161 * 16 15 14 19 19 C 1.37093 * 120.00129 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00231 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00385 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47159 * 89.99450 * 23 21 19 25 25 H 1.48496 * 109.47107 * 209.99383 * 23 21 19 26 26 H 1.48497 * 109.47035 * 329.99759 * 23 21 19 27 27 C 1.46902 * 111.00384 * 66.04404 * 14 13 12 28 28 C 1.52996 * 117.49932 * 127.69967 * 27 14 13 29 29 C 1.52997 * 60.00285 * 252.51399 * 28 27 14 30 30 H 1.08996 * 109.47414 * 299.30434 * 1 2 3 31 31 H 1.09004 * 109.47015 * 179.30612 * 1 2 3 32 32 H 1.08998 * 109.47107 * 59.30774 * 1 2 3 33 33 H 1.09005 * 110.50253 * 281.37884 * 5 4 2 34 34 H 1.08997 * 110.64252 * 158.44584 * 5 4 2 35 35 H 1.09005 * 110.91326 * 204.86002 * 6 5 4 36 36 H 1.08997 * 110.93718 * 81.26782 * 6 5 4 37 37 H 0.96992 * 120.00269 * 0.02562 * 11 9 7 38 38 H 1.08999 * 109.47353 * 299.99887 * 12 11 9 39 39 H 1.09000 * 109.46879 * 60.00399 * 12 11 9 40 40 H 1.08999 * 109.47032 * 299.99957 * 13 12 11 41 41 H 1.09000 * 109.47464 * 59.99990 * 13 12 11 42 42 H 1.09002 * 109.47030 * 282.31245 * 15 14 13 43 43 H 1.08996 * 109.47377 * 42.31522 * 15 14 13 44 44 H 0.96996 * 119.99851 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00445 * 179.97438 * 22 21 19 46 46 H 1.09000 * 115.54865 * 273.41118 * 27 14 13 47 47 H 1.09002 * 117.49972 * 0.02562 * 28 27 14 48 48 H 1.09006 * 117.49730 * 145.02016 * 28 27 14 49 49 H 1.08995 * 117.49763 * 252.51573 * 29 28 27 50 50 H 1.08997 * 117.50178 * 107.48589 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6965 -1.1585 5 6 3.2379 -1.3652 -0.7627 6 6 2.9196 -1.8904 0.6603 7 6 2.0539 -0.7463 1.2423 8 1 1.2246 -1.1523 1.8215 9 6 2.8918 0.1715 2.0947 10 8 3.0662 1.3228 1.7556 11 7 3.4480 -0.2874 3.2333 12 6 4.2630 0.6048 4.0618 13 6 4.7714 -0.1590 5.2860 14 7 5.5880 0.7357 6.1170 15 6 6.2857 -0.0146 7.1698 16 6 7.4189 0.8174 7.7127 17 8 7.6101 1.9357 7.2835 18 7 8.2201 0.3189 8.6751 19 6 9.2513 1.0756 9.1686 20 1 9.4214 2.0713 8.7864 21 6 10.0768 0.5619 10.1611 22 7 11.0656 1.2870 10.6338 23 14 9.7821 -1.1600 10.8226 24 1 10.5567 -2.1387 10.0181 25 1 10.2200 -1.2275 12.2399 26 1 8.3352 -1.4827 10.7356 27 6 4.7707 1.8126 6.6916 28 6 4.8461 2.0263 8.2047 29 6 3.5932 1.4081 7.5810 30 1 -0.3634 0.5030 0.8961 31 1 -0.3633 -1.0276 -0.0124 32 1 -0.3633 0.5245 -0.8837 33 1 4.0685 -0.6598 -0.7346 34 1 3.4586 -2.1927 -1.4368 35 1 3.8332 -2.0205 1.2405 36 1 2.3543 -2.8212 0.6145 37 1 3.3094 -1.2084 3.5040 38 1 5.1118 0.9656 3.4808 39 1 3.6587 1.4518 4.3866 40 1 3.9228 -0.5201 5.8671 41 1 5.3758 -1.0058 4.9609 42 1 5.5876 -0.2465 7.9741 43 1 6.6818 -0.9410 6.7541 44 1 8.0674 -0.5755 9.0181 45 1 11.6417 0.9285 11.3270 46 1 4.6473 2.6952 6.0638 47 1 5.5025 1.3680 8.7738 48 1 4.7726 3.0497 8.5727 49 1 2.6955 2.0248 7.5386 50 1 3.4252 0.3429 7.7397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:11 Heat of formation + Delta-G solvation = -69.806220 kcal Electronic energy + Delta-G solvation = -29701.648275 eV Core-core repulsion = 25537.544559 eV Total energy + Delta-G solvation = -4164.103716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.90703 -39.74728 -38.71239 -37.49627 -35.44650 -33.94137 -33.47566 -32.82429 -31.86892 -31.65544 -29.65596 -27.19862 -26.20433 -24.13048 -23.53936 -22.82948 -22.07556 -21.89605 -20.50740 -19.94982 -19.18330 -18.14144 -17.85439 -17.06371 -16.59146 -16.44169 -15.94953 -15.75294 -15.62708 -15.38447 -14.92985 -14.63121 -14.26141 -14.04410 -13.73826 -13.64806 -13.60137 -13.27005 -13.00625 -12.75016 -12.73927 -12.50153 -12.29170 -12.10778 -11.95480 -11.79126 -11.68973 -11.48941 -11.34698 -11.29662 -11.15142 -11.08923 -10.62301 -10.54362 -10.26957 -10.00762 -9.97743 -9.87909 -9.54306 -9.33935 -8.63850 -8.17533 -8.04437 -6.30841 -3.82178 2.27671 2.69585 2.99720 3.04695 3.13289 3.42419 3.69297 3.83303 3.97301 3.98671 4.09212 4.25477 4.31948 4.52661 4.60240 4.73764 4.78178 4.82639 4.92755 5.00774 5.01565 5.05983 5.09318 5.12543 5.20636 5.22685 5.27139 5.29477 5.39850 5.46526 5.47771 5.61071 5.68494 5.70371 5.76043 5.79905 5.85047 5.89475 6.07675 6.14842 6.21365 6.35859 6.49664 6.95218 7.11501 7.14654 7.58042 7.88060 8.14264 8.60606 8.96112 9.42407 9.84324 10.82421 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.001993 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.112320 B =14042.634694 C =14568.556734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.079 3.921 3 H 0.095 0.905 4 O -0.372 6.372 5 C 0.046 3.954 6 C -0.145 4.145 7 C -0.144 4.144 8 H 0.112 0.888 9 C 0.520 3.480 10 O -0.531 6.531 11 N -0.726 5.726 12 C 0.123 3.877 13 C 0.047 3.953 14 N -0.480 5.480 15 C 0.036 3.964 16 C 0.455 3.545 17 O -0.548 6.548 18 N -0.596 5.596 19 C -0.302 4.302 20 H 0.120 0.880 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.271 1.271 27 C 0.041 3.959 28 C -0.166 4.166 29 C -0.227 4.227 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.399 0.601 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.368 0.632 45 H 0.273 0.727 46 H 0.124 0.876 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.094 0.906 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.580 -11.397 -15.383 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 H 0.113 0.887 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.166 4.166 8 H 0.130 0.870 9 C 0.306 3.694 10 O -0.407 6.407 11 N -0.378 5.378 12 C 0.000 4.000 13 C -0.081 4.081 14 N -0.202 5.202 15 C -0.096 4.096 16 C 0.240 3.760 17 O -0.428 6.428 18 N -0.236 5.236 19 C -0.430 4.430 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.523 5.523 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.197 1.197 27 C -0.068 4.068 28 C -0.203 4.203 29 C -0.266 4.266 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.233 0.767 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.107 0.893 44 H 0.201 0.799 45 H 0.083 0.917 46 H 0.141 0.859 47 H 0.120 0.880 48 H 0.116 0.884 49 H 0.112 0.888 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.846 -9.529 -16.287 28.118 hybrid contribution -0.565 -2.304 1.786 2.969 sum -21.411 -11.833 -14.501 28.438 Atomic orbital electron populations 1.21925 0.93342 1.02622 1.02814 1.22792 0.95143 0.97286 0.82634 0.88719 1.88926 1.39612 1.67780 1.32836 1.23586 0.88198 0.96586 0.94674 1.23161 1.00271 0.97696 0.97201 1.22758 0.99329 0.96493 0.97991 0.86956 1.20272 0.79817 0.88296 0.81056 1.90726 1.60317 1.18639 1.71000 1.45905 1.52624 1.15371 1.23905 1.21292 0.95083 0.92603 0.91029 1.22250 0.96461 0.95423 0.93984 1.61441 1.26766 1.10743 1.21244 1.22044 0.96356 0.96904 0.94252 1.19491 0.84911 0.88464 0.83097 1.90591 1.72377 1.19693 1.60097 1.42208 1.29309 1.16119 1.35972 1.19404 1.04452 1.01084 1.18082 0.86268 1.25025 0.96066 0.98115 0.97036 1.69616 1.17274 1.36912 1.28458 0.86689 0.78349 0.84728 0.79680 1.19675 1.20246 1.19652 1.22642 0.94897 0.96595 0.92665 1.23253 0.98714 1.02823 0.95536 1.23471 0.93931 1.00994 1.08245 0.91180 0.91990 0.91494 0.91793 0.88557 0.89543 0.89255 0.76706 0.90154 0.90930 0.94069 0.90186 0.92658 0.89315 0.79914 0.91664 0.85868 0.87991 0.88378 0.88797 0.89521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.36 37.16 0.35 -0.68 16 2 C 0.08 0.71 3.66 -26.16 -0.10 0.61 16 3 H 0.10 1.07 6.43 -51.93 -0.33 0.74 16 4 O -0.37 -3.69 11.20 -35.23 -0.39 -4.08 16 5 C 0.05 0.34 7.72 38.21 0.29 0.64 16 6 C -0.15 -0.80 6.70 -24.72 -0.17 -0.96 16 7 C -0.14 -1.01 3.06 -90.24 -0.28 -1.29 16 8 H 0.11 0.55 7.70 -51.93 -0.40 0.15 16 9 C 0.52 5.13 7.06 -10.98 -0.08 5.06 16 10 O -0.53 -7.59 15.25 5.56 0.08 -7.50 16 11 N -0.73 -5.84 5.41 -60.29 -0.33 -6.17 16 12 C 0.12 1.31 5.67 -4.04 -0.02 1.29 16 13 C 0.05 0.48 4.96 -3.82 -0.02 0.46 16 14 N -0.48 -7.04 4.34 -228.08 -0.99 -8.03 16 15 C 0.04 0.56 5.00 -4.97 -0.02 0.54 16 16 C 0.46 9.92 5.84 -10.98 -0.06 9.85 16 17 O -0.55 -14.24 14.79 5.54 0.08 -14.15 16 18 N -0.60 -13.75 5.09 -10.96 -0.06 -13.80 16 19 C -0.30 -8.37 10.16 -14.94 -0.15 -8.52 16 20 H 0.12 3.81 7.39 -52.48 -0.39 3.42 16 21 C 0.04 1.09 5.50 -17.47 -0.10 0.99 16 22 N -0.88 -25.59 13.96 55.50 0.77 -24.82 16 23 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 24 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 25 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 26 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 27 C 0.04 0.60 4.56 -67.71 -0.31 0.29 16 28 C -0.17 -2.58 8.48 -26.73 -0.23 -2.80 16 29 C -0.23 -2.73 9.26 -26.73 -0.25 -2.97 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.42 7.75 -51.93 -0.40 0.01 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.40 1.97 8.47 -40.82 -0.35 1.63 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.86 7.30 -51.93 -0.38 0.48 16 40 H 0.04 0.37 6.87 -51.93 -0.36 0.01 16 41 H 0.08 0.72 7.85 -51.93 -0.41 0.31 16 42 H 0.06 0.78 5.99 -51.93 -0.31 0.46 16 43 H 0.09 1.18 7.77 -51.93 -0.40 0.78 16 44 H 0.37 7.46 5.76 -40.82 -0.24 7.22 16 45 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 46 H 0.12 1.82 8.03 -51.93 -0.42 1.41 16 47 H 0.10 1.78 4.91 -51.93 -0.26 1.53 16 48 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 49 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 50 H 0.09 0.96 7.14 -51.93 -0.37 0.59 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -34.92 396.47 -8.68 -43.60 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: -7.98 Total: 12.15 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.13 Total: 2.50 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: -0.60 Total: -52.82 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.23 Total: -25.74 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.92 -8.68 -43.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.209 kcal (2) G-P(sol) polarization free energy of solvation -34.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds