Wall clock time and date at job start Sat Apr 11 2020 05:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.86982 * 2 1 4 4 O 1.43745 * 109.88284 * 238.98768 * 2 1 3 5 5 C 1.44572 * 106.87100 * 214.17236 * 4 2 1 6 6 C 1.54989 * 103.58814 * 39.87680 * 5 4 2 7 7 C 1.54103 * 109.87825 * 120.99745 * 2 1 3 8 8 H 1.08998 * 110.49052 * 2.78765 * 7 2 1 9 9 C 1.50702 * 110.48976 * 240.26454 * 7 2 1 10 10 O 1.21282 * 119.99968 * 359.97438 * 9 7 2 11 11 N 1.34778 * 119.99778 * 180.02562 * 9 7 2 12 12 C 1.46507 * 119.99643 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46680 * 180.02562 * 12 11 9 14 14 N 1.46901 * 109.46822 * 180.02562 * 13 12 11 15 15 C 1.46903 * 110.99906 * 190.00008 * 14 13 12 16 16 C 1.50701 * 109.47156 * 162.31757 * 15 14 13 17 17 O 1.21300 * 119.99936 * 1.34067 * 16 15 14 18 18 N 1.34779 * 120.00122 * 181.34161 * 16 15 14 19 19 C 1.37093 * 120.00129 * 179.97438 * 18 16 15 20 20 H 1.08005 * 119.99972 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00231 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00385 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99790 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47159 * 89.99450 * 23 21 19 25 25 H 1.48496 * 109.47107 * 209.99383 * 23 21 19 26 26 H 1.48497 * 109.47035 * 329.99759 * 23 21 19 27 27 C 1.46902 * 111.00384 * 66.04404 * 14 13 12 28 28 C 1.52996 * 117.49932 * 127.69967 * 27 14 13 29 29 C 1.52997 * 60.00285 * 252.51399 * 28 27 14 30 30 H 1.08996 * 109.47414 * 299.30434 * 1 2 3 31 31 H 1.09004 * 109.47015 * 179.30612 * 1 2 3 32 32 H 1.08998 * 109.47107 * 59.30774 * 1 2 3 33 33 H 1.09005 * 110.50253 * 281.37884 * 5 4 2 34 34 H 1.08997 * 110.64252 * 158.44584 * 5 4 2 35 35 H 1.09005 * 110.91326 * 204.86002 * 6 5 4 36 36 H 1.08997 * 110.93718 * 81.26782 * 6 5 4 37 37 H 0.96992 * 120.00269 * 0.02562 * 11 9 7 38 38 H 1.08999 * 109.47353 * 299.99887 * 12 11 9 39 39 H 1.09000 * 109.46879 * 60.00399 * 12 11 9 40 40 H 1.08999 * 109.47032 * 299.99957 * 13 12 11 41 41 H 1.09000 * 109.47464 * 59.99990 * 13 12 11 42 42 H 1.09002 * 109.47030 * 282.31245 * 15 14 13 43 43 H 1.08996 * 109.47377 * 42.31522 * 15 14 13 44 44 H 0.96996 * 119.99851 * 0.02562 * 18 16 15 45 45 H 0.97001 * 120.00445 * 179.97438 * 22 21 19 46 46 H 1.09000 * 115.54865 * 273.41118 * 27 14 13 47 47 H 1.09002 * 117.49972 * 0.02562 * 28 27 14 48 48 H 1.09006 * 117.49730 * 145.02016 * 28 27 14 49 49 H 1.08995 * 117.49763 * 252.51573 * 29 28 27 50 50 H 1.08997 * 117.50178 * 107.48589 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0188 -0.6965 -1.1585 5 6 3.2379 -1.3652 -0.7627 6 6 2.9196 -1.8904 0.6603 7 6 2.0539 -0.7463 1.2423 8 1 1.2246 -1.1523 1.8215 9 6 2.8918 0.1715 2.0947 10 8 3.0662 1.3228 1.7556 11 7 3.4480 -0.2874 3.2333 12 6 4.2630 0.6048 4.0618 13 6 4.7714 -0.1590 5.2860 14 7 5.5880 0.7357 6.1170 15 6 6.2857 -0.0146 7.1698 16 6 7.4189 0.8174 7.7127 17 8 7.6101 1.9357 7.2835 18 7 8.2201 0.3189 8.6751 19 6 9.2513 1.0756 9.1686 20 1 9.4214 2.0713 8.7864 21 6 10.0768 0.5619 10.1611 22 7 11.0656 1.2870 10.6338 23 14 9.7821 -1.1600 10.8226 24 1 10.5567 -2.1387 10.0181 25 1 10.2200 -1.2275 12.2399 26 1 8.3352 -1.4827 10.7356 27 6 4.7707 1.8126 6.6916 28 6 4.8461 2.0263 8.2047 29 6 3.5932 1.4081 7.5810 30 1 -0.3634 0.5030 0.8961 31 1 -0.3633 -1.0276 -0.0124 32 1 -0.3633 0.5245 -0.8837 33 1 4.0685 -0.6598 -0.7346 34 1 3.4586 -2.1927 -1.4368 35 1 3.8332 -2.0205 1.2405 36 1 2.3543 -2.8212 0.6145 37 1 3.3094 -1.2084 3.5040 38 1 5.1118 0.9656 3.4808 39 1 3.6587 1.4518 4.3866 40 1 3.9228 -0.5201 5.8671 41 1 5.3758 -1.0058 4.9609 42 1 5.5876 -0.2465 7.9741 43 1 6.6818 -0.9410 6.7541 44 1 8.0674 -0.5755 9.0181 45 1 11.6417 0.9285 11.3270 46 1 4.6473 2.6952 6.0638 47 1 5.5025 1.3680 8.7738 48 1 4.7726 3.0497 8.5727 49 1 2.6955 2.0248 7.5386 50 1 3.4252 0.3429 7.7397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558743.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:10 Heat of formation + Delta-G solvation = -98.953829 kcal Electronic energy + Delta-G solvation = -29702.912210 eV Core-core repulsion = 25537.544559 eV Total energy + Delta-G solvation = -4165.367651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.62283 -41.04242 -39.53722 -39.00175 -36.34258 -35.89388 -34.45969 -33.71340 -33.51649 -32.41665 -30.72206 -28.27857 -27.13199 -25.82738 -24.40567 -23.41218 -23.09067 -22.68486 -21.55122 -21.12579 -20.77260 -19.84906 -18.57592 -18.13041 -17.64691 -17.37016 -17.07871 -16.80127 -16.47665 -16.35481 -16.17717 -15.70226 -15.41279 -15.16154 -15.03686 -14.90448 -14.53904 -14.41620 -14.18463 -13.93675 -13.60625 -13.51898 -13.26099 -13.21217 -13.06066 -12.76601 -12.68346 -12.39233 -12.32950 -12.28255 -12.12375 -12.03171 -11.96610 -11.84707 -11.61223 -11.47156 -11.10462 -10.99838 -10.59939 -10.36651 -10.19526 -10.15061 -9.18635 -8.37842 -5.98107 1.30236 1.37116 1.45355 1.53164 1.91669 2.03129 2.25185 2.69150 2.86717 2.87712 3.15890 3.23935 3.44318 3.69669 3.72581 3.74106 3.94212 3.96831 4.02034 4.07845 4.13650 4.20479 4.22661 4.32253 4.36080 4.42888 4.43785 4.53869 4.64304 4.71183 4.71994 4.80044 4.90152 4.94644 4.96102 4.98253 5.04626 5.11259 5.14906 5.16437 5.25052 5.37072 5.55920 5.88243 5.89038 6.01574 6.11248 6.50161 6.64068 6.93951 7.20120 7.45128 8.04802 8.80134 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.001993 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.112320 B =14042.634694 C =14568.556734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.071 3.929 3 H 0.059 0.941 4 O -0.393 6.393 5 C 0.034 3.966 6 C -0.134 4.134 7 C -0.134 4.134 8 H 0.146 0.854 9 C 0.517 3.483 10 O -0.584 6.584 11 N -0.707 5.707 12 C 0.132 3.868 13 C 0.055 3.945 14 N -0.507 5.507 15 C 0.050 3.950 16 C 0.456 3.544 17 O -0.599 6.599 18 N -0.597 5.597 19 C -0.321 4.321 20 H 0.052 0.948 21 C -0.020 4.020 22 N -0.939 5.939 23 Si 0.965 3.035 24 H -0.257 1.257 25 H -0.278 1.278 26 H -0.229 1.229 27 C 0.028 3.972 28 C -0.198 4.198 29 C -0.180 4.180 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.118 0.882 37 H 0.420 0.580 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.126 0.874 44 H 0.388 0.612 45 H 0.277 0.723 46 H 0.108 0.892 47 H 0.082 0.918 48 H 0.082 0.918 49 H 0.111 0.889 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.722 -16.866 -14.981 33.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 H 0.077 0.923 4 O -0.313 6.313 5 C -0.042 4.042 6 C -0.172 4.172 7 C -0.155 4.155 8 H 0.164 0.836 9 C 0.304 3.696 10 O -0.464 6.464 11 N -0.359 5.359 12 C 0.007 3.993 13 C -0.072 4.072 14 N -0.230 5.230 15 C -0.081 4.081 16 C 0.244 3.756 17 O -0.482 6.482 18 N -0.240 5.240 19 C -0.450 4.450 20 H 0.070 0.930 21 C -0.218 4.218 22 N -0.580 5.580 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.204 1.204 26 H -0.152 1.152 27 C -0.081 4.081 28 C -0.235 4.235 29 C -0.219 4.219 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.144 0.856 44 H 0.223 0.777 45 H 0.087 0.913 46 H 0.125 0.875 47 H 0.101 0.899 48 H 0.101 0.899 49 H 0.129 0.871 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -24.025 -15.051 -15.894 32.502 hybrid contribution 0.446 -0.399 1.531 1.644 sum -23.580 -15.451 -14.363 31.639 Atomic orbital electron populations 1.21904 0.91719 1.03697 1.02920 1.22792 0.96457 0.95866 0.83535 0.92327 1.88907 1.40476 1.68052 1.33817 1.23783 0.86890 0.96640 0.96870 1.23198 1.00789 0.97855 0.95362 1.22756 0.99949 0.95962 0.96859 0.83642 1.20857 0.79501 0.87950 0.81302 1.90718 1.62248 1.21204 1.72266 1.45671 1.51374 1.15985 1.22919 1.21016 0.94076 0.92950 0.91257 1.22279 0.97260 0.94760 0.92908 1.61255 1.28479 1.11819 1.21482 1.21919 0.94358 0.96357 0.95481 1.20804 0.85229 0.88264 0.81340 1.90573 1.73795 1.22472 1.61348 1.42021 1.28677 1.16598 1.36696 1.18943 1.07085 0.99595 1.19419 0.92960 1.26128 0.94939 1.04117 0.96600 1.69815 1.18765 1.40021 1.29396 0.85358 0.80812 0.76955 0.78322 1.18157 1.20360 1.15237 1.22571 0.96899 0.96922 0.91727 1.23173 1.01822 1.02251 0.96300 1.23511 0.92649 1.02329 1.03374 0.90344 0.90268 0.92260 0.93808 0.86591 0.88476 0.86396 0.74237 0.93253 0.92529 0.91073 0.87902 0.89814 0.85649 0.77666 0.91333 0.87464 0.89938 0.89903 0.87090 0.86998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.36 71.98 0.67 -1.11 16 2 C 0.07 1.24 3.66 30.97 0.11 1.35 16 3 H 0.06 1.43 6.43 -2.39 -0.02 1.42 16 4 O -0.39 -7.55 11.20 -148.98 -1.67 -9.22 16 5 C 0.03 0.46 7.72 72.66 0.56 1.02 16 6 C -0.13 -1.01 6.70 31.90 0.21 -0.80 16 7 C -0.13 -1.53 3.06 -10.55 -0.03 -1.57 16 8 H 0.15 0.74 7.70 -2.39 -0.02 0.72 16 9 C 0.52 9.51 7.06 87.66 0.62 10.13 16 10 O -0.58 -17.30 15.25 -3.03 -0.05 -17.35 16 11 N -0.71 -9.35 5.41 -463.05 -2.51 -11.85 16 12 C 0.13 2.58 5.67 86.38 0.49 3.07 16 13 C 0.06 0.91 4.96 86.30 0.43 1.33 16 14 N -0.51 -13.81 4.34 -875.51 -3.80 -17.62 16 15 C 0.05 1.40 5.00 85.56 0.43 1.82 16 16 C 0.46 19.86 5.84 87.66 0.51 20.37 16 17 O -0.60 -32.73 14.79 -3.09 -0.05 -32.78 16 18 N -0.60 -27.38 5.09 -306.98 -1.56 -28.94 16 19 C -0.32 -18.65 10.16 84.04 0.85 -17.80 16 20 H 0.05 3.66 7.39 -2.91 -0.02 3.63 16 21 C -0.02 -1.10 5.50 84.93 0.47 -0.64 16 22 N -0.94 -56.82 13.96 21.66 0.30 -56.51 16 23 Si 0.97 38.17 27.74 68.60 1.90 40.07 16 24 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 25 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.23 -7.45 6.52 99.48 0.65 -6.80 16 27 C 0.03 0.78 4.56 44.91 0.20 0.99 16 28 C -0.20 -6.09 8.48 30.59 0.26 -5.83 16 29 C -0.18 -3.71 9.26 30.59 0.28 -3.43 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.10 0.55 7.75 -2.38 -0.02 0.53 16 36 H 0.12 0.30 8.14 -2.39 -0.02 0.29 16 37 H 0.42 2.10 8.47 -92.71 -0.79 1.31 16 38 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.06 1.31 7.30 -2.39 -0.02 1.29 16 40 H 0.07 0.81 6.87 -2.39 -0.02 0.79 16 41 H 0.10 1.28 7.85 -2.39 -0.02 1.26 16 42 H 0.08 1.94 5.99 -2.39 -0.01 1.92 16 43 H 0.13 2.65 7.77 -2.39 -0.02 2.63 16 44 H 0.39 14.54 5.76 -92.71 -0.53 14.01 16 45 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 46 H 0.11 3.30 8.03 -2.39 -0.02 3.29 16 47 H 0.08 2.84 4.91 -2.39 -0.01 2.83 16 48 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 49 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 50 H 0.11 1.80 7.14 -2.39 -0.02 1.78 16 Total: -1.00 -87.36 396.47 -1.76 -89.12 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -0.41 Total: 36.15 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: 6.07 Total: 8.93 kcal Atomic # 7 Polarization: -107.36 SS G_CDS: -7.57 Total: -114.93 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -1.76 Total: -59.34 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.90 Total: 40.07 kcal Total: -87.36 -1.76 -89.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558743.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.834 kcal (2) G-P(sol) polarization free energy of solvation -87.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds