Wall clock time and date at job start Sat Apr 11 2020 05:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.98907 * 2 1 4 4 O 1.43752 * 109.87625 * 121.07747 * 2 1 3 5 5 C 1.44468 * 106.98317 * 145.93690 * 4 2 1 6 6 C 1.54997 * 103.44977 * 319.94950 * 5 4 2 7 7 C 1.54092 * 109.87910 * 238.91013 * 2 1 3 8 8 H 1.08997 * 110.48930 * 357.21931 * 7 2 1 9 9 C 1.50696 * 110.60188 * 119.81691 * 7 2 1 10 10 O 1.21280 * 119.99967 * 356.28933 * 9 7 2 11 11 N 1.34773 * 120.00469 * 176.28627 * 9 7 2 12 12 C 1.46500 * 120.00501 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47463 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47486 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00309 * 190.00320 * 14 13 12 16 16 C 1.50704 * 109.47086 * 162.31452 * 15 14 13 17 17 O 1.21291 * 119.99745 * 1.33189 * 16 15 14 18 18 N 1.34773 * 119.99603 * 181.32901 * 16 15 14 19 19 C 1.37099 * 119.99654 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00084 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00114 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99654 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46752 * 60.00134 * 23 21 19 25 25 H 1.48503 * 109.46962 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.47230 * 299.99929 * 23 21 19 27 27 C 1.46900 * 110.99983 * 66.04613 * 14 13 12 28 28 C 1.53005 * 117.49750 * 127.74046 * 27 14 13 29 29 C 1.53001 * 117.49445 * 59.08332 * 27 14 13 30 30 H 1.08996 * 109.47077 * 181.09044 * 1 2 3 31 31 H 1.09002 * 109.47194 * 301.09119 * 1 2 3 32 32 H 1.08996 * 109.47211 * 61.08687 * 1 2 3 33 33 H 1.09001 * 110.65757 * 201.45149 * 5 4 2 34 34 H 1.09006 * 110.61796 * 78.42931 * 5 4 2 35 35 H 1.08997 * 110.90710 * 278.80307 * 6 5 4 36 36 H 1.08997 * 110.90655 * 155.23317 * 6 5 4 37 37 H 0.97009 * 119.99662 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.47234 * 300.00148 * 12 11 9 39 39 H 1.09001 * 109.47107 * 59.99750 * 12 11 9 40 40 H 1.08999 * 109.47302 * 300.00456 * 13 12 11 41 41 H 1.09001 * 109.46878 * 59.99959 * 13 12 11 42 42 H 1.08993 * 109.47108 * 282.31487 * 15 14 13 43 43 H 1.08999 * 109.46977 * 42.31654 * 15 14 13 44 44 H 0.96999 * 120.00584 * 0.02562 * 18 16 15 45 45 H 0.97004 * 119.99943 * 179.97438 * 22 21 19 46 46 H 1.08993 * 115.55359 * 273.41221 * 27 14 13 47 47 H 1.09001 * 117.49971 * 359.97438 * 28 27 14 48 48 H 1.08995 * 117.49831 * 145.02852 * 28 27 14 49 49 H 1.09004 * 117.50213 * 214.98086 * 29 27 14 50 50 H 1.09003 * 117.50254 * 359.97438 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 1.1579 5 6 3.2386 -1.3646 0.7650 6 6 2.9195 -1.8915 -0.6573 7 6 2.0540 -0.7483 -1.2409 8 1 1.2247 -1.1550 -1.8196 9 6 2.8939 0.1654 -2.0957 10 8 3.0152 1.3343 -1.7960 11 7 3.5103 -0.3163 -3.1932 12 6 4.3263 0.5721 -4.0245 13 6 4.9088 -0.2192 -5.1972 14 7 5.7265 0.6717 -6.0311 15 6 6.1075 0.0137 -7.2881 16 6 6.5527 1.0532 -8.2843 17 8 6.5756 2.2243 -7.9695 18 7 6.9254 0.6813 -9.5250 19 6 7.3299 1.6269 -10.4315 20 1 7.3503 2.6698 -10.1513 21 6 7.7136 1.2437 -11.7108 22 7 7.6883 -0.0251 -12.0519 23 14 8.2641 2.5322 -12.9462 24 1 9.4505 3.2512 -12.4160 25 1 8.6189 1.8701 -14.2272 26 1 7.1614 3.4995 -13.1771 27 6 6.9127 1.1359 -5.2993 28 6 8.2745 0.9523 -5.9722 29 6 7.8839 0.0731 -4.7815 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3634 0.5307 0.8800 32 1 -0.3633 0.4968 -0.8995 33 1 3.4595 -2.1914 1.4400 34 1 4.0693 -0.6593 0.7356 35 1 2.3539 -2.8221 -0.6096 36 1 3.8329 -2.0229 -1.2375 37 1 3.4135 -1.2514 -3.4327 38 1 3.7067 1.3839 -4.4055 39 1 5.1385 0.9850 -3.4262 40 1 5.5284 -1.0308 -4.8159 41 1 4.0968 -0.6324 -5.7956 42 1 6.9243 -0.6830 -7.1004 43 1 5.2512 -0.5294 -7.6878 44 1 6.9067 -0.2552 -9.7768 45 1 7.9558 -0.2927 -12.9451 46 1 6.7693 2.0270 -4.6884 47 1 8.2903 0.4867 -6.9576 48 1 9.0272 1.7224 -5.8034 49 1 8.3798 0.2652 -3.8300 50 1 7.6425 -0.9705 -4.9835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317558744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:15 Heat of formation + Delta-G solvation = -76.970008 kcal Electronic energy + Delta-G solvation = -29666.020903 eV Core-core repulsion = 25501.606542 eV Total energy + Delta-G solvation = -4164.414361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.88786 -39.63095 -38.68392 -37.32496 -35.40118 -33.88485 -33.42193 -32.78171 -31.84211 -31.22023 -29.51763 -27.10578 -26.10995 -24.26984 -23.48068 -22.82802 -22.03337 -21.86119 -20.47087 -19.98815 -18.84458 -17.83020 -17.79321 -16.97398 -16.49769 -16.45256 -15.95495 -15.70426 -15.64527 -15.31186 -14.75905 -14.50260 -14.08519 -14.03726 -13.87954 -13.65418 -13.44419 -13.43088 -12.96739 -12.72329 -12.64432 -12.39742 -12.13175 -11.91748 -11.79417 -11.58064 -11.51482 -11.46754 -11.28981 -11.23522 -11.01965 -10.99021 -10.47732 -10.44252 -10.24244 -10.20632 -9.94402 -9.85919 -9.46212 -9.29628 -8.50894 -7.96354 -7.92156 -6.41084 -3.81627 2.31314 2.74055 3.20241 3.25791 3.30290 3.43156 3.83218 3.94707 3.99337 4.04163 4.21931 4.28381 4.35277 4.54542 4.71029 4.79341 4.81868 4.93838 5.03261 5.07749 5.09879 5.12837 5.14227 5.16251 5.25394 5.25753 5.26921 5.36578 5.41109 5.48483 5.62992 5.72071 5.73326 5.78103 5.82558 5.83341 5.92743 6.09965 6.20636 6.24622 6.27952 6.44246 6.51071 7.07196 7.19285 7.21334 7.55664 7.91510 8.06456 8.62974 9.19448 9.55028 10.07731 10.76722 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.001873 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.152643 B =14946.231311 C =15233.038814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.080 3.920 3 H 0.095 0.905 4 O -0.373 6.373 5 C 0.047 3.953 6 C -0.146 4.146 7 C -0.144 4.144 8 H 0.114 0.886 9 C 0.520 3.480 10 O -0.532 6.532 11 N -0.726 5.726 12 C 0.124 3.876 13 C 0.047 3.953 14 N -0.480 5.480 15 C 0.039 3.961 16 C 0.447 3.553 17 O -0.567 6.567 18 N -0.568 5.568 19 C -0.296 4.296 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.904 5.904 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.042 3.958 28 C -0.165 4.165 29 C -0.228 4.228 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.399 0.601 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.041 0.959 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.087 0.913 44 H 0.390 0.610 45 H 0.271 0.729 46 H 0.122 0.878 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.092 0.908 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.224 -9.832 21.214 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.022 3.978 3 H 0.113 0.887 4 O -0.292 6.292 5 C -0.030 4.030 6 C -0.184 4.184 7 C -0.166 4.166 8 H 0.132 0.868 9 C 0.306 3.694 10 O -0.408 6.408 11 N -0.378 5.378 12 C 0.000 4.000 13 C -0.081 4.081 14 N -0.202 5.202 15 C -0.092 4.092 16 C 0.232 3.768 17 O -0.449 6.449 18 N -0.206 5.206 19 C -0.426 4.426 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.546 5.546 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.067 4.067 28 C -0.202 4.202 29 C -0.267 4.267 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.233 0.767 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.098 0.902 42 H 0.072 0.928 43 H 0.105 0.895 44 H 0.223 0.777 45 H 0.081 0.919 46 H 0.139 0.861 47 H 0.122 0.878 48 H 0.114 0.886 49 H 0.111 0.889 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.465 -7.834 21.516 24.777 hybrid contribution 0.903 -1.297 -1.202 1.986 sum -8.562 -9.131 20.314 23.861 Atomic orbital electron populations 1.21920 0.93250 1.02648 1.02863 1.22794 0.95241 0.97177 0.82564 0.88742 1.88900 1.39433 1.67824 1.33043 1.23562 0.88168 0.96530 0.94742 1.23179 1.00245 0.97829 0.97184 1.22762 0.99375 0.96466 0.98002 0.86778 1.20262 0.79739 0.88507 0.80921 1.90723 1.61844 1.17478 1.70759 1.45913 1.51170 1.13811 1.26866 1.21294 0.94836 0.92885 0.90970 1.22245 0.97367 0.94087 0.94431 1.61450 1.18300 1.37667 1.02787 1.22013 1.00671 0.96002 0.90554 1.19586 0.84387 0.89557 0.83285 1.90545 1.57627 1.18429 1.78310 1.41848 1.58587 1.10174 1.10012 1.19627 1.40271 0.91198 0.91475 0.88003 1.25239 0.97759 0.96900 0.98104 1.69601 1.48608 1.15083 1.21261 0.85934 0.79242 0.80055 0.79087 1.19963 1.21042 1.19925 1.22617 0.85573 0.98429 1.00076 1.23256 0.97838 1.02058 0.97094 1.23481 1.06959 0.97019 0.99268 0.91970 0.91519 0.91078 0.88576 0.91929 0.89244 0.89627 0.76683 0.90183 0.91011 0.94126 0.90200 0.92771 0.89459 0.77659 0.91905 0.86070 0.87826 0.88586 0.88922 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.36 37.16 0.35 -0.74 16 2 C 0.08 0.73 3.67 -26.16 -0.10 0.64 16 3 H 0.09 1.09 6.46 -51.93 -0.34 0.75 16 4 O -0.37 -3.69 11.19 -35.23 -0.39 -4.09 16 5 C 0.05 0.34 7.73 38.21 0.30 0.63 16 6 C -0.15 -0.81 6.67 -24.72 -0.16 -0.98 16 7 C -0.14 -1.06 3.06 -90.25 -0.28 -1.33 16 8 H 0.11 0.61 7.70 -51.93 -0.40 0.21 16 9 C 0.52 5.33 7.11 -10.99 -0.08 5.25 16 10 O -0.53 -7.77 15.28 5.56 0.08 -7.68 16 11 N -0.73 -6.19 5.27 -60.30 -0.32 -6.51 16 12 C 0.12 1.38 5.67 -4.04 -0.02 1.36 16 13 C 0.05 0.52 4.96 -3.83 -0.02 0.50 16 14 N -0.48 -7.41 4.34 -228.09 -0.99 -8.40 16 15 C 0.04 0.65 5.00 -4.97 -0.02 0.63 16 16 C 0.45 10.15 5.84 -10.99 -0.06 10.09 16 17 O -0.57 -14.93 14.79 5.55 0.08 -14.85 16 18 N -0.57 -14.00 5.29 -10.96 -0.06 -14.06 16 19 C -0.30 -8.12 9.68 -14.93 -0.14 -8.26 16 20 H 0.10 2.94 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.28 13.05 55.50 0.72 -23.55 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 C 0.04 0.64 4.55 -67.71 -0.31 0.33 16 28 C -0.17 -2.67 8.48 -26.69 -0.23 -2.89 16 29 C -0.23 -2.88 9.27 -26.69 -0.25 -3.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.09 0.40 7.55 -51.93 -0.39 0.01 16 37 H 0.40 2.19 8.36 -40.82 -0.34 1.85 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.07 0.89 7.30 -51.93 -0.38 0.51 16 40 H 0.04 0.39 6.87 -51.93 -0.36 0.04 16 41 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 42 H 0.05 0.84 5.99 -51.93 -0.31 0.53 16 43 H 0.09 1.31 7.77 -51.93 -0.40 0.90 16 44 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 45 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.12 1.86 8.03 -51.93 -0.42 1.44 16 47 H 0.10 1.91 4.91 -51.93 -0.26 1.66 16 48 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 49 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 50 H 0.09 1.03 7.15 -51.93 -0.37 0.66 16 LS Contribution 399.20 15.07 6.02 6.02 Total: -1.00 -33.49 399.20 -9.01 -42.50 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.01 Total: 12.13 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.13 Total: 2.56 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.64 Total: -52.52 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: -0.23 Total: -26.62 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.49 -9.01 -42.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.472 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds