Wall clock time and date at job start Sat Apr 11 2020 05:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.98907 * 2 1 4 4 O 1.43752 * 109.87625 * 121.07747 * 2 1 3 5 5 C 1.44468 * 106.98317 * 145.93690 * 4 2 1 6 6 C 1.54997 * 103.44977 * 319.94950 * 5 4 2 7 7 C 1.54092 * 109.87910 * 238.91013 * 2 1 3 8 8 H 1.08997 * 110.48930 * 357.21931 * 7 2 1 9 9 C 1.50696 * 110.60188 * 119.81691 * 7 2 1 10 10 O 1.21280 * 119.99967 * 356.28933 * 9 7 2 11 11 N 1.34773 * 120.00469 * 176.28627 * 9 7 2 12 12 C 1.46500 * 120.00501 * 179.97438 * 11 9 7 13 13 C 1.52997 * 109.47463 * 179.97438 * 12 11 9 14 14 N 1.46894 * 109.47486 * 179.97438 * 13 12 11 15 15 C 1.46901 * 111.00309 * 190.00320 * 14 13 12 16 16 C 1.50704 * 109.47086 * 162.31452 * 15 14 13 17 17 O 1.21291 * 119.99745 * 1.33189 * 16 15 14 18 18 N 1.34773 * 119.99603 * 181.32901 * 16 15 14 19 19 C 1.37099 * 119.99654 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00084 * 0.02562 * 19 18 16 21 21 C 1.38953 * 120.00114 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99654 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00045 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46752 * 60.00134 * 23 21 19 25 25 H 1.48503 * 109.46962 * 179.97438 * 23 21 19 26 26 H 1.48489 * 109.47230 * 299.99929 * 23 21 19 27 27 C 1.46900 * 110.99983 * 66.04613 * 14 13 12 28 28 C 1.53005 * 117.49750 * 127.74046 * 27 14 13 29 29 C 1.53001 * 117.49445 * 59.08332 * 27 14 13 30 30 H 1.08996 * 109.47077 * 181.09044 * 1 2 3 31 31 H 1.09002 * 109.47194 * 301.09119 * 1 2 3 32 32 H 1.08996 * 109.47211 * 61.08687 * 1 2 3 33 33 H 1.09001 * 110.65757 * 201.45149 * 5 4 2 34 34 H 1.09006 * 110.61796 * 78.42931 * 5 4 2 35 35 H 1.08997 * 110.90710 * 278.80307 * 6 5 4 36 36 H 1.08997 * 110.90655 * 155.23317 * 6 5 4 37 37 H 0.97009 * 119.99662 * 359.97438 * 11 9 7 38 38 H 1.08999 * 109.47234 * 300.00148 * 12 11 9 39 39 H 1.09001 * 109.47107 * 59.99750 * 12 11 9 40 40 H 1.08999 * 109.47302 * 300.00456 * 13 12 11 41 41 H 1.09001 * 109.46878 * 59.99959 * 13 12 11 42 42 H 1.08993 * 109.47108 * 282.31487 * 15 14 13 43 43 H 1.08999 * 109.46977 * 42.31654 * 15 14 13 44 44 H 0.96999 * 120.00584 * 0.02562 * 18 16 15 45 45 H 0.97004 * 119.99943 * 179.97438 * 22 21 19 46 46 H 1.08993 * 115.55359 * 273.41221 * 27 14 13 47 47 H 1.09001 * 117.49971 * 359.97438 * 28 27 14 48 48 H 1.08995 * 117.49831 * 145.02852 * 28 27 14 49 49 H 1.09004 * 117.50213 * 214.98086 * 29 27 14 50 50 H 1.09003 * 117.50254 * 359.97438 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0187 -0.6978 1.1579 5 6 3.2386 -1.3646 0.7650 6 6 2.9195 -1.8915 -0.6573 7 6 2.0540 -0.7483 -1.2409 8 1 1.2247 -1.1550 -1.8196 9 6 2.8939 0.1654 -2.0957 10 8 3.0152 1.3343 -1.7960 11 7 3.5103 -0.3163 -3.1932 12 6 4.3263 0.5721 -4.0245 13 6 4.9088 -0.2192 -5.1972 14 7 5.7265 0.6717 -6.0311 15 6 6.1075 0.0137 -7.2881 16 6 6.5527 1.0532 -8.2843 17 8 6.5756 2.2243 -7.9695 18 7 6.9254 0.6813 -9.5250 19 6 7.3299 1.6269 -10.4315 20 1 7.3503 2.6698 -10.1513 21 6 7.7136 1.2437 -11.7108 22 7 7.6883 -0.0251 -12.0519 23 14 8.2641 2.5322 -12.9462 24 1 9.4505 3.2512 -12.4160 25 1 8.6189 1.8701 -14.2272 26 1 7.1614 3.4995 -13.1771 27 6 6.9127 1.1359 -5.2993 28 6 8.2745 0.9523 -5.9722 29 6 7.8839 0.0731 -4.7815 30 1 -0.3633 -1.0274 0.0196 31 1 -0.3634 0.5307 0.8800 32 1 -0.3633 0.4968 -0.8995 33 1 3.4595 -2.1914 1.4400 34 1 4.0693 -0.6593 0.7356 35 1 2.3539 -2.8221 -0.6096 36 1 3.8329 -2.0229 -1.2375 37 1 3.4135 -1.2514 -3.4327 38 1 3.7067 1.3839 -4.4055 39 1 5.1385 0.9850 -3.4262 40 1 5.5284 -1.0308 -4.8159 41 1 4.0968 -0.6324 -5.7956 42 1 6.9243 -0.6830 -7.1004 43 1 5.2512 -0.5294 -7.6878 44 1 6.9067 -0.2552 -9.7768 45 1 7.9558 -0.2927 -12.9451 46 1 6.7693 2.0270 -4.6884 47 1 8.2903 0.4867 -6.9576 48 1 9.0272 1.7224 -5.8034 49 1 8.3798 0.2652 -3.8300 50 1 7.6425 -0.9705 -4.9835 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317558744.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:14 Heat of formation + Delta-G solvation = -103.225266 kcal Electronic energy + Delta-G solvation = -29667.159416 eV Core-core repulsion = 25501.606542 eV Total energy + Delta-G solvation = -4165.552875 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.62634 -40.96766 -39.52051 -38.91850 -36.34523 -35.84946 -34.45029 -33.54405 -33.19534 -32.41167 -30.63924 -28.18533 -27.13177 -25.98562 -24.40724 -23.41816 -23.09570 -22.69473 -21.58890 -21.04530 -20.40430 -19.68799 -18.58872 -18.10045 -17.64892 -17.35183 -17.09216 -16.63602 -16.47138 -16.36633 -16.12234 -15.80128 -15.60466 -15.21930 -14.95401 -14.84658 -14.57464 -14.19994 -14.12634 -13.61664 -13.49411 -13.46236 -13.25833 -13.18802 -13.02938 -12.73006 -12.67302 -12.40829 -12.34973 -12.28078 -12.15205 -12.10391 -12.01797 -11.84567 -11.60731 -11.46216 -11.09793 -10.99035 -10.60374 -10.27550 -10.15295 -9.95401 -9.18025 -8.43326 -5.90779 1.40115 1.41603 1.51825 1.53222 1.92000 2.12365 2.31014 2.78866 2.87974 2.88499 3.23228 3.40651 3.43419 3.70624 3.73524 3.73865 3.95606 3.97291 4.01818 4.07925 4.13717 4.22390 4.30800 4.32915 4.39854 4.42687 4.50864 4.56014 4.64262 4.71261 4.71659 4.80673 4.89549 4.94376 4.95881 4.98065 5.04701 5.11032 5.14949 5.17313 5.24707 5.36598 5.43842 5.85180 5.89756 6.07645 6.13533 6.49268 6.65853 7.18222 7.19010 7.62470 8.19975 8.73864 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.026733 B = 0.001873 C = 0.001838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.152643 B =14946.231311 C =15233.038814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.073 3.927 3 H 0.060 0.940 4 O -0.392 6.392 5 C 0.035 3.965 6 C -0.135 4.135 7 C -0.136 4.136 8 H 0.143 0.857 9 C 0.518 3.482 10 O -0.584 6.584 11 N -0.708 5.708 12 C 0.133 3.867 13 C 0.054 3.946 14 N -0.504 5.504 15 C 0.054 3.946 16 C 0.448 3.552 17 O -0.608 6.608 18 N -0.579 5.579 19 C -0.327 4.327 20 H 0.076 0.924 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.988 3.012 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.274 1.274 27 C 0.031 3.969 28 C -0.195 4.195 29 C -0.183 4.183 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.117 0.883 34 H 0.046 0.954 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.419 0.581 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.068 0.932 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.113 0.887 44 H 0.395 0.605 45 H 0.276 0.724 46 H 0.111 0.889 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.113 0.887 50 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.877 -12.952 21.660 27.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.015 3.985 3 H 0.078 0.922 4 O -0.312 6.312 5 C -0.041 4.041 6 C -0.173 4.173 7 C -0.157 4.157 8 H 0.161 0.839 9 C 0.305 3.695 10 O -0.464 6.464 11 N -0.360 5.360 12 C 0.009 3.991 13 C -0.073 4.073 14 N -0.227 5.227 15 C -0.077 4.077 16 C 0.235 3.765 17 O -0.493 6.493 18 N -0.217 5.217 19 C -0.456 4.456 20 H 0.094 0.906 21 C -0.213 4.213 22 N -0.562 5.562 23 Si 0.812 3.188 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.078 4.078 28 C -0.233 4.233 29 C -0.222 4.222 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.065 0.935 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.257 0.743 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.086 0.914 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.228 0.772 45 H 0.085 0.915 46 H 0.129 0.871 47 H 0.097 0.903 48 H 0.105 0.895 49 H 0.131 0.869 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.126 -11.023 21.963 26.579 hybrid contribution 1.106 -0.273 -1.244 1.687 sum -9.020 -11.296 20.719 25.263 Atomic orbital electron populations 1.21900 0.91858 1.03655 1.02880 1.22769 0.96388 0.95827 0.83470 0.92212 1.88882 1.40420 1.68081 1.33847 1.23774 0.86879 0.96691 0.96730 1.23216 1.00755 0.97762 0.95555 1.22760 0.99935 0.96109 0.96899 0.83936 1.20841 0.79428 0.88187 0.81076 1.90713 1.63652 1.19947 1.72045 1.45693 1.50055 1.14433 1.25857 1.21002 0.94160 0.92801 0.91163 1.22269 0.97520 0.93702 0.93817 1.61291 1.18817 1.39415 1.03179 1.21820 1.02198 0.94040 0.89666 1.20665 0.82198 0.90324 0.83328 1.90516 1.58834 1.20897 1.79067 1.41901 1.59374 1.09868 1.10606 1.19548 1.42304 0.90825 0.92970 0.90621 1.25951 0.97353 0.98878 0.99152 1.69657 1.48665 1.16088 1.21829 0.85057 0.78598 0.77825 0.77270 1.19940 1.19539 1.19940 1.22575 0.85396 0.99659 1.00198 1.23159 0.98847 1.03752 0.97498 1.23517 1.03597 0.96963 0.98155 0.90316 0.92141 0.90559 0.86514 0.93522 0.86602 0.88313 0.74328 0.93032 0.92420 0.91365 0.88363 0.90754 0.86863 0.77156 0.91459 0.87132 0.90313 0.89538 0.86912 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.36 71.98 0.67 -1.28 16 2 C 0.07 1.31 3.67 30.96 0.11 1.42 16 3 H 0.06 1.48 6.46 -2.39 -0.02 1.46 16 4 O -0.39 -7.49 11.19 -148.98 -1.67 -9.15 16 5 C 0.04 0.45 7.73 72.67 0.56 1.02 16 6 C -0.14 -1.03 6.67 31.90 0.21 -0.82 16 7 C -0.14 -1.68 3.06 -10.55 -0.03 -1.71 16 8 H 0.14 0.98 7.70 -2.39 -0.02 0.97 16 9 C 0.52 10.01 7.11 87.66 0.62 10.63 16 10 O -0.58 -17.59 15.28 -3.03 -0.05 -17.64 16 11 N -0.71 -10.36 5.27 -463.08 -2.44 -12.79 16 12 C 0.13 2.80 5.67 86.38 0.49 3.29 16 13 C 0.05 1.03 4.96 86.30 0.43 1.46 16 14 N -0.50 -14.87 4.34 -875.54 -3.80 -18.67 16 15 C 0.05 1.72 5.00 85.56 0.43 2.15 16 16 C 0.45 20.62 5.84 87.66 0.51 21.13 16 17 O -0.61 -33.19 14.79 -3.06 -0.05 -33.23 16 18 N -0.58 -29.04 5.29 -306.98 -1.62 -30.66 16 19 C -0.33 -18.41 9.68 84.04 0.81 -17.60 16 20 H 0.08 4.58 7.16 -2.91 -0.02 4.56 16 21 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 22 N -0.92 -49.24 13.05 21.66 0.28 -48.96 16 23 Si 0.99 43.13 29.55 68.60 2.03 45.15 16 24 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 27 C 0.03 0.91 4.55 44.92 0.20 1.11 16 28 C -0.20 -6.30 8.48 30.62 0.26 -6.04 16 29 C -0.18 -4.14 9.27 30.62 0.28 -3.86 16 30 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.10 0.52 7.55 -2.39 -0.02 0.50 16 37 H 0.42 2.84 8.36 -92.70 -0.78 2.07 16 38 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.06 1.39 7.30 -2.39 -0.02 1.38 16 40 H 0.07 0.97 6.87 -2.39 -0.02 0.95 16 41 H 0.10 1.55 7.84 -2.39 -0.02 1.53 16 42 H 0.07 2.11 5.99 -2.39 -0.01 2.09 16 43 H 0.11 3.05 7.77 -2.39 -0.02 3.03 16 44 H 0.39 18.73 7.90 -92.71 -0.73 17.99 16 45 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.11 3.47 8.03 -2.39 -0.02 3.45 16 47 H 0.08 2.94 4.91 -2.39 -0.01 2.93 16 48 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 49 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 50 H 0.11 2.03 7.15 -2.39 -0.02 2.01 16 Total: -1.00 -77.39 399.20 -1.81 -79.20 By element: Atomic # 1 Polarization: 36.67 SS G_CDS: -0.54 Total: 36.13 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.04 Total: 10.63 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -7.58 Total: -111.08 kcal Atomic # 8 Polarization: -58.27 SS G_CDS: -1.76 Total: -60.03 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.15 kcal Total: -77.39 -1.81 -79.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317558744.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.027 kcal (2) G-P(sol) polarization free energy of solvation -77.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds