Wall clock time and date at job start Sat Apr 11 2020 05:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.54801 * 109.46962 * 240.00086 * 2 1 3 5 5 N 1.45125 * 109.52889 * 172.10672 * 4 2 1 6 6 C 1.34773 * 118.75667 * 269.29210 * 5 4 2 7 7 O 1.21349 * 119.99929 * 186.28708 * 6 5 4 8 8 C 1.49449 * 119.99972 * 6.28606 * 6 5 4 9 9 O 1.21345 * 120.00165 * 6.33613 * 8 6 5 10 10 N 1.34776 * 119.99956 * 186.33787 * 8 6 5 11 11 C 1.46494 * 120.00079 * 180.02562 * 10 8 6 12 12 C 1.53043 * 109.45916 * 275.06452 * 11 10 8 13 13 C 1.53191 * 109.31291 * 178.61421 * 12 11 10 14 14 N 1.46919 * 108.77843 * 54.63579 * 13 12 11 15 15 C 1.36940 * 120.63253 * 126.40672 * 14 13 12 16 16 H 1.07994 * 120.00129 * 206.39780 * 15 14 13 17 17 C 1.38813 * 119.99657 * 26.40538 * 15 14 13 18 18 N 1.31620 * 120.00129 * 17.08055 * 17 15 14 19 19 Si 1.86793 * 119.99967 * 197.08162 * 17 15 14 20 20 H 1.48500 * 109.47362 * 59.99985 * 19 17 15 21 21 H 1.48500 * 109.47341 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47035 * 299.99792 * 19 17 15 23 23 C 1.46924 * 118.74006 * 306.39469 * 14 13 12 24 24 C 1.53040 * 109.46293 * 154.99723 * 11 10 8 25 25 C 1.47513 * 122.48477 * 89.57065 * 5 4 2 26 26 C 1.53948 * 110.81972 * 317.97892 * 25 5 4 27 27 C 1.51541 * 109.72427 * 320.30139 * 26 25 5 28 28 O 1.38023 * 109.46658 * 119.99084 * 2 1 3 29 29 H 1.09000 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47250 * 299.99787 * 1 2 3 31 31 H 1.08996 * 109.46721 * 59.99853 * 1 2 3 32 32 H 1.08999 * 109.46134 * 52.09180 * 4 2 1 33 33 H 1.08999 * 109.45315 * 292.11564 * 4 2 1 34 34 H 0.97003 * 119.99497 * 359.72247 * 10 8 6 35 35 H 1.08998 * 109.46123 * 35.02479 * 11 10 8 36 36 H 1.08992 * 109.49824 * 298.56757 * 12 11 10 37 37 H 1.09004 * 109.49436 * 58.66628 * 12 11 10 38 38 H 1.08999 * 109.58738 * 294.84510 * 13 12 11 39 39 H 1.09004 * 109.58824 * 174.42553 * 13 12 11 40 40 H 0.96995 * 120.00122 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.58240 * 293.82053 * 23 14 13 42 42 H 1.08996 * 109.70866 * 173.45969 * 23 14 13 43 43 H 1.08999 * 109.49796 * 301.34048 * 24 11 10 44 44 H 1.09004 * 109.49444 * 61.43214 * 24 11 10 45 45 H 1.09002 * 109.16657 * 78.49362 * 25 5 4 46 46 H 1.08994 * 109.16517 * 197.69408 * 25 5 4 47 47 H 1.09004 * 109.45535 * 200.17838 * 26 25 5 48 48 H 1.08996 * 109.28122 * 80.32279 * 26 25 5 49 49 H 1.08994 * 109.58962 * 331.51198 * 27 26 25 50 50 H 1.09006 * 109.58629 * 211.08060 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0460 -0.7297 -1.2640 5 7 3.4850 -0.5700 -1.3629 6 6 3.9750 0.4800 -2.0514 7 8 5.1691 0.5740 -2.2459 8 6 3.0477 1.5284 -2.5752 9 8 1.8701 1.4971 -2.2843 10 7 3.5195 2.5087 -3.3708 11 6 2.6107 3.5367 -3.8838 12 6 1.9326 3.0279 -5.1580 13 6 0.9574 4.0915 -5.6723 14 7 1.6837 5.3576 -5.8398 15 6 1.6514 6.0279 -7.0335 16 1 2.4677 6.6788 -7.3095 17 6 0.5693 5.8707 -7.8886 18 7 -0.5591 5.3662 -7.4363 19 14 0.7146 6.3751 -9.6813 20 1 1.7997 5.5950 -10.3287 21 1 -0.5698 6.1069 -10.3767 22 1 1.0296 7.8240 -9.7638 23 6 2.4452 5.8911 -4.7021 24 6 3.4036 4.8073 -4.1986 25 6 4.4317 -1.5166 -0.7435 26 6 3.9602 -1.9187 0.6657 27 6 3.3880 -0.7096 1.3779 28 8 1.9900 -0.6505 1.1271 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.5717 -0.3039 -2.1482 33 1 1.8022 -1.7899 -1.1960 34 1 4.4617 2.5360 -3.6000 35 1 1.8524 3.7586 -3.1329 36 1 2.6883 2.8293 -5.9178 37 1 1.3871 2.1101 -4.9381 38 1 0.1501 4.2258 -4.9524 39 1 0.5458 3.7767 -6.6313 40 1 -1.3151 5.2561 -8.0339 41 1 1.7592 6.1721 -3.9030 42 1 3.0152 6.7646 -5.0185 43 1 3.9053 5.1560 -3.2959 44 1 4.1456 4.5919 -4.9676 45 1 4.5068 -2.4073 -1.3674 46 1 5.4126 -1.0468 -0.6725 47 1 4.8050 -2.3084 1.2338 48 1 3.1927 -2.6881 0.5826 49 1 3.8653 0.1955 1.0025 50 1 3.5634 -0.8001 2.4500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324435788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:19 Heat of formation + Delta-G solvation = -77.179605 kcal Electronic energy + Delta-G solvation = -31334.834795 eV Core-core repulsion = 27170.411345 eV Total energy + Delta-G solvation = -4164.423450 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.30363 -39.54670 -38.58051 -37.42246 -35.81493 -34.58629 -33.84151 -32.17337 -30.66512 -30.16372 -29.57225 -27.42503 -26.52726 -25.33515 -23.98179 -22.33323 -22.11716 -21.66828 -20.94352 -20.09736 -19.23701 -17.92126 -17.43794 -16.94625 -16.76966 -16.48666 -15.92016 -15.65708 -15.41056 -14.89838 -14.62509 -14.33690 -14.00355 -13.80186 -13.62038 -13.55404 -13.15298 -13.13654 -13.03631 -12.72933 -12.57105 -12.45571 -12.24802 -11.95754 -11.63517 -11.55588 -11.34728 -11.28883 -11.13682 -10.97673 -10.78020 -10.73892 -10.43850 -10.30869 -10.12050 -9.90471 -9.80423 -9.74138 -9.30169 -8.97880 -8.82207 -8.46612 -6.74841 -5.81365 -3.23443 1.35767 2.21521 3.13160 3.36068 3.38992 3.43283 3.44211 3.45990 4.28095 4.39962 4.47189 4.50984 4.74687 4.84021 4.91162 5.01867 5.15715 5.20136 5.27344 5.33678 5.35182 5.39819 5.41665 5.50985 5.53845 5.62784 5.69529 5.73605 5.78531 5.90862 5.99946 6.06039 6.15179 6.18235 6.23614 6.34224 6.50042 6.59224 6.66812 6.70920 6.81637 6.87130 7.28073 7.33508 7.43266 7.63974 7.66195 7.76342 8.03173 8.41163 9.17675 9.80930 10.36098 11.27051 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.002560 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.364797 B =10935.837128 C =11421.128279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 H 0.056 0.944 4 C 0.064 3.936 5 N -0.585 5.585 6 C 0.501 3.499 7 O -0.523 6.523 8 C 0.500 3.500 9 O -0.513 6.513 10 N -0.689 5.689 11 C 0.149 3.851 12 C -0.147 4.147 13 C 0.173 3.827 14 N -0.593 5.593 15 C -0.254 4.254 16 H 0.067 0.933 17 C 0.002 3.998 18 N -0.903 5.903 19 Si 0.904 3.096 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.283 1.283 23 C 0.149 3.851 24 C -0.141 4.141 25 C 0.107 3.893 26 C -0.165 4.165 27 C 0.075 3.925 28 O -0.390 6.390 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.082 0.918 32 H 0.122 0.878 33 H 0.077 0.923 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.021 0.979 39 H 0.095 0.905 40 H 0.255 0.745 41 H 0.021 0.979 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -14.401 16.487 23.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.037 3.963 3 H 0.074 0.926 4 C -0.059 4.059 5 N -0.319 5.319 6 C 0.284 3.716 7 O -0.399 6.399 8 C 0.281 3.719 9 O -0.390 6.390 10 N -0.340 5.340 11 C 0.046 3.954 12 C -0.187 4.187 13 C 0.046 3.954 14 N -0.316 5.316 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.197 4.197 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.022 3.978 24 C -0.180 4.180 25 C -0.015 4.015 26 C -0.203 4.203 27 C -0.001 4.001 28 O -0.309 6.309 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.096 0.904 34 H 0.242 0.758 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.113 0.887 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.090 0.910 46 H 0.111 0.889 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.469 -14.466 16.592 23.245 hybrid contribution 0.778 0.200 -1.244 1.480 sum 8.246 -14.266 15.348 22.519 Atomic orbital electron populations 1.21669 0.91917 1.02536 1.03244 1.21937 0.95520 0.94969 0.83909 0.92605 1.23105 0.78538 1.01692 1.02591 1.47812 1.07983 1.24941 1.51147 1.20576 0.88544 0.82984 0.79529 1.90734 1.15922 1.76736 1.56511 1.19943 0.88155 0.83362 0.80475 1.90694 1.16388 1.73845 1.58035 1.46236 1.13693 1.26486 1.47571 1.21249 0.91484 0.86094 0.96568 1.22597 1.00340 1.00235 0.95544 1.20809 0.90426 0.83073 1.01050 1.44119 1.57287 1.21408 1.08736 1.19157 1.01252 1.24210 0.93747 0.91555 1.25021 0.94588 1.00819 0.99260 1.70009 1.01424 1.49114 1.34165 0.86352 0.76791 0.78432 0.85080 1.21062 1.21618 1.20876 1.20828 0.92751 0.93558 0.90651 1.22371 0.99437 0.95824 1.00414 1.22023 0.93214 0.92742 0.93515 1.22542 1.02415 0.99982 0.95351 1.22130 0.81307 0.96863 0.99844 1.86255 1.22961 1.77258 1.44465 0.92174 0.91897 0.89918 0.86063 0.90425 0.75809 0.89509 0.92455 0.92750 0.96089 0.88736 0.93494 0.96106 0.92185 0.92412 0.91583 0.91028 0.88928 0.89329 0.90016 0.93217 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.55 37.16 0.36 -1.02 16 2 C 0.10 1.07 2.55 -25.78 -0.07 1.01 16 3 H 0.06 0.74 7.17 -51.93 -0.37 0.36 16 4 C 0.06 0.69 4.41 -3.83 -0.02 0.67 16 5 N -0.59 -6.56 2.18 -172.75 -0.38 -6.93 16 6 C 0.50 6.72 7.68 -11.59 -0.09 6.63 16 7 O -0.52 -7.81 15.84 5.50 0.09 -7.72 16 8 C 0.50 7.22 7.62 -11.59 -0.09 7.14 16 9 O -0.51 -7.91 11.38 5.50 0.06 -7.85 16 10 N -0.69 -9.90 5.07 -54.20 -0.27 -10.17 16 11 C 0.15 2.46 2.41 -67.89 -0.16 2.30 16 12 C -0.15 -2.79 5.65 -26.61 -0.15 -2.94 16 13 C 0.17 4.05 5.32 -3.71 -0.02 4.03 16 14 N -0.59 -14.42 3.00 -172.33 -0.52 -14.93 16 15 C -0.25 -6.82 9.61 -15.06 -0.14 -6.96 16 16 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 17 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 18 N -0.90 -25.83 11.07 55.49 0.61 -25.22 16 19 Si 0.90 21.42 29.59 -169.99 -5.03 16.39 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.15 2.98 6.51 -3.71 -0.02 2.95 16 24 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 25 C 0.11 0.93 6.15 -2.99 -0.02 0.91 16 26 C -0.16 -1.15 5.79 -26.98 -0.16 -1.30 16 27 C 0.08 0.65 6.38 36.42 0.23 0.88 16 28 O -0.39 -4.23 9.47 -26.56 -0.25 -4.48 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.12 1.49 5.41 -51.93 -0.28 1.21 16 33 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 34 H 0.41 5.35 8.09 -40.82 -0.33 5.02 16 35 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.09 2.50 5.92 -51.93 -0.31 2.19 16 40 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.87 7.07 -51.93 -0.37 0.50 16 47 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.08 0.58 8.01 -51.93 -0.42 0.17 16 49 H 0.05 0.49 7.41 -51.93 -0.38 0.11 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 385.64 15.07 5.81 5.81 Total: -1.00 -30.18 385.64 -8.77 -38.95 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.31 Total: 4.33 kcal Atomic # 6 Polarization: 12.41 SS G_CDS: -0.58 Total: 11.82 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: -0.55 Total: -57.26 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.10 Total: -20.04 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.18 -8.77 -38.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324435788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.230 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds