Wall clock time and date at job start Sat Apr 11 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46979 * 2 1 4 4 C 1.54801 * 109.46962 * 240.00086 * 2 1 3 5 5 N 1.45125 * 109.52889 * 172.10672 * 4 2 1 6 6 C 1.34773 * 118.75667 * 269.29210 * 5 4 2 7 7 O 1.21349 * 119.99929 * 186.28708 * 6 5 4 8 8 C 1.49449 * 119.99972 * 6.28606 * 6 5 4 9 9 O 1.21345 * 120.00165 * 6.33613 * 8 6 5 10 10 N 1.34776 * 119.99956 * 186.33787 * 8 6 5 11 11 C 1.46494 * 120.00079 * 180.02562 * 10 8 6 12 12 C 1.53043 * 109.45916 * 275.06452 * 11 10 8 13 13 C 1.53191 * 109.31291 * 178.61421 * 12 11 10 14 14 N 1.46919 * 108.77843 * 54.63579 * 13 12 11 15 15 C 1.36940 * 120.63253 * 126.40672 * 14 13 12 16 16 H 1.07994 * 120.00129 * 206.39780 * 15 14 13 17 17 C 1.38813 * 119.99657 * 26.40538 * 15 14 13 18 18 N 1.31620 * 120.00129 * 17.08055 * 17 15 14 19 19 Si 1.86793 * 119.99967 * 197.08162 * 17 15 14 20 20 H 1.48500 * 109.47362 * 59.99985 * 19 17 15 21 21 H 1.48500 * 109.47341 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.47035 * 299.99792 * 19 17 15 23 23 C 1.46924 * 118.74006 * 306.39469 * 14 13 12 24 24 C 1.53040 * 109.46293 * 154.99723 * 11 10 8 25 25 C 1.47513 * 122.48477 * 89.57065 * 5 4 2 26 26 C 1.53948 * 110.81972 * 317.97892 * 25 5 4 27 27 C 1.51541 * 109.72427 * 320.30139 * 26 25 5 28 28 O 1.38023 * 109.46658 * 119.99084 * 2 1 3 29 29 H 1.09000 * 109.46979 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47250 * 299.99787 * 1 2 3 31 31 H 1.08996 * 109.46721 * 59.99853 * 1 2 3 32 32 H 1.08999 * 109.46134 * 52.09180 * 4 2 1 33 33 H 1.08999 * 109.45315 * 292.11564 * 4 2 1 34 34 H 0.97003 * 119.99497 * 359.72247 * 10 8 6 35 35 H 1.08998 * 109.46123 * 35.02479 * 11 10 8 36 36 H 1.08992 * 109.49824 * 298.56757 * 12 11 10 37 37 H 1.09004 * 109.49436 * 58.66628 * 12 11 10 38 38 H 1.08999 * 109.58738 * 294.84510 * 13 12 11 39 39 H 1.09004 * 109.58824 * 174.42553 * 13 12 11 40 40 H 0.96995 * 120.00122 * 180.02562 * 18 17 15 41 41 H 1.09003 * 109.58240 * 293.82053 * 23 14 13 42 42 H 1.08996 * 109.70866 * 173.45969 * 23 14 13 43 43 H 1.08999 * 109.49796 * 301.34048 * 24 11 10 44 44 H 1.09004 * 109.49444 * 61.43214 * 24 11 10 45 45 H 1.09002 * 109.16657 * 78.49362 * 25 5 4 46 46 H 1.08994 * 109.16517 * 197.69408 * 25 5 4 47 47 H 1.09004 * 109.45535 * 200.17838 * 26 25 5 48 48 H 1.08996 * 109.28122 * 80.32279 * 26 25 5 49 49 H 1.08994 * 109.58962 * 331.51198 * 27 26 25 50 50 H 1.09006 * 109.58629 * 211.08060 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0460 -0.7297 -1.2640 5 7 3.4850 -0.5700 -1.3629 6 6 3.9750 0.4800 -2.0514 7 8 5.1691 0.5740 -2.2459 8 6 3.0477 1.5284 -2.5752 9 8 1.8701 1.4971 -2.2843 10 7 3.5195 2.5087 -3.3708 11 6 2.6107 3.5367 -3.8838 12 6 1.9326 3.0279 -5.1580 13 6 0.9574 4.0915 -5.6723 14 7 1.6837 5.3576 -5.8398 15 6 1.6514 6.0279 -7.0335 16 1 2.4677 6.6788 -7.3095 17 6 0.5693 5.8707 -7.8886 18 7 -0.5591 5.3662 -7.4363 19 14 0.7146 6.3751 -9.6813 20 1 1.7997 5.5950 -10.3287 21 1 -0.5698 6.1069 -10.3767 22 1 1.0296 7.8240 -9.7638 23 6 2.4452 5.8911 -4.7021 24 6 3.4036 4.8073 -4.1986 25 6 4.4317 -1.5166 -0.7435 26 6 3.9602 -1.9187 0.6657 27 6 3.3880 -0.7096 1.3779 28 8 1.9900 -0.6505 1.1271 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.5717 -0.3039 -2.1482 33 1 1.8022 -1.7899 -1.1960 34 1 4.4617 2.5360 -3.6000 35 1 1.8524 3.7586 -3.1329 36 1 2.6883 2.8293 -5.9178 37 1 1.3871 2.1101 -4.9381 38 1 0.1501 4.2258 -4.9524 39 1 0.5458 3.7767 -6.6313 40 1 -1.3151 5.2561 -8.0339 41 1 1.7592 6.1721 -3.9030 42 1 3.0152 6.7646 -5.0185 43 1 3.9053 5.1560 -3.2959 44 1 4.1456 4.5919 -4.9676 45 1 4.5068 -2.4073 -1.3674 46 1 5.4126 -1.0468 -0.6725 47 1 4.8050 -2.3084 1.2338 48 1 3.1927 -2.6881 0.5826 49 1 3.8653 0.1955 1.0025 50 1 3.5634 -0.8001 2.4500 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324435788.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:18 Heat of formation + Delta-G solvation = -96.459809 kcal Electronic energy + Delta-G solvation = -31335.670847 eV Core-core repulsion = 27170.411345 eV Total energy + Delta-G solvation = -4165.259502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.32552 -40.59545 -39.66393 -38.89695 -36.84107 -35.95451 -34.68603 -33.90134 -31.84003 -31.48529 -31.24795 -28.23261 -27.66707 -26.81859 -25.22531 -23.94229 -23.49215 -22.57803 -21.93484 -21.36553 -20.60479 -19.11237 -18.62596 -18.38837 -17.73874 -17.48238 -17.06358 -16.82905 -16.54617 -16.38377 -15.77312 -15.63657 -15.35556 -15.22045 -14.84202 -14.75743 -14.68340 -14.21408 -14.11168 -13.91264 -13.80074 -13.49328 -13.21791 -13.14136 -12.98298 -12.80695 -12.67543 -12.56669 -12.41634 -12.22980 -12.13058 -12.08271 -12.00903 -11.85401 -11.61593 -11.50567 -11.38824 -10.71763 -10.57596 -10.42586 -10.16975 -9.79896 -8.72994 -7.87111 -5.31664 0.25697 1.20035 1.48114 1.50572 1.57033 2.02344 2.33036 2.51966 2.69948 3.19649 3.29384 3.66324 3.69254 3.80535 3.81645 3.99723 4.01856 4.08765 4.11471 4.27963 4.31085 4.41333 4.44985 4.47622 4.63754 4.65865 4.67850 4.75094 4.79245 4.84232 4.87316 4.98385 5.01103 5.02946 5.06221 5.09801 5.12650 5.23516 5.30034 5.33908 5.39200 5.47885 5.63786 5.71937 5.79478 6.17711 6.38547 6.57430 6.66076 6.89515 7.14051 7.85092 8.35844 9.19474 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.002560 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.364797 B =10935.837128 C =11421.128279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.101 3.899 3 H 0.031 0.969 4 C 0.066 3.934 5 N -0.578 5.578 6 C 0.502 3.498 7 O -0.540 6.540 8 C 0.498 3.502 9 O -0.524 6.524 10 N -0.683 5.683 11 C 0.162 3.838 12 C -0.131 4.131 13 C 0.182 3.818 14 N -0.611 5.611 15 C -0.262 4.262 16 H 0.072 0.928 17 C -0.053 4.053 18 N -0.936 5.936 19 Si 0.967 3.033 20 H -0.279 1.279 21 H -0.296 1.296 22 H -0.274 1.274 23 C 0.144 3.856 24 C -0.126 4.126 25 C 0.101 3.899 26 C -0.154 4.154 27 C 0.067 3.933 28 O -0.398 6.398 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.416 0.584 35 H 0.074 0.926 36 H 0.056 0.944 37 H 0.055 0.945 38 H -0.004 1.004 39 H 0.060 0.940 40 H 0.250 0.750 41 H 0.017 0.983 42 H 0.066 0.934 43 H 0.090 0.910 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.087 0.913 47 H 0.117 0.883 48 H 0.086 0.914 49 H 0.033 0.967 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.861 -15.716 17.619 25.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.042 3.958 3 H 0.049 0.951 4 C -0.057 4.057 5 N -0.310 5.310 6 C 0.285 3.715 7 O -0.418 6.418 8 C 0.279 3.721 9 O -0.401 6.401 10 N -0.334 5.334 11 C 0.058 3.942 12 C -0.171 4.171 13 C 0.055 3.945 14 N -0.334 5.334 15 C -0.392 4.392 16 H 0.090 0.910 17 C -0.248 4.248 18 N -0.582 5.582 19 Si 0.795 3.205 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.200 1.200 23 C 0.018 3.982 24 C -0.165 4.165 25 C -0.019 4.019 26 C -0.192 4.192 27 C -0.009 4.009 28 O -0.318 6.318 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.253 0.747 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.014 0.986 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.106 0.894 47 H 0.135 0.865 48 H 0.104 0.896 49 H 0.052 0.948 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 9.399 -15.801 17.764 25.565 hybrid contribution 0.182 0.588 -1.484 1.607 sum 9.581 -15.213 16.279 24.253 Atomic orbital electron populations 1.21632 0.91379 1.03309 1.02759 1.21795 0.95989 0.93712 0.84322 0.95127 1.23065 0.78204 1.02676 1.01708 1.47943 1.08555 1.24438 1.50090 1.20296 0.87981 0.83280 0.79974 1.90727 1.16245 1.77248 1.57591 1.20242 0.88223 0.83494 0.80166 1.90708 1.17066 1.74083 1.58282 1.45980 1.13715 1.26092 1.47663 1.20882 0.91625 0.86836 0.94847 1.22333 0.99360 0.98691 0.96741 1.20525 0.90934 0.84328 0.98703 1.44370 1.57734 1.21796 1.09524 1.19528 1.01086 1.23750 0.94833 0.91040 1.25781 0.94393 1.01630 1.03000 1.70174 1.02032 1.50885 1.35142 0.85343 0.76347 0.78366 0.80408 1.20490 1.22240 1.20011 1.21006 0.92920 0.95099 0.89202 1.22183 0.98365 0.94135 1.01852 1.22279 0.92370 0.92499 0.94792 1.22500 1.03468 0.99096 0.94113 1.22361 0.80147 0.96991 1.01363 1.86245 1.24374 1.77006 1.44153 0.90743 0.91805 0.90994 0.87637 0.88416 0.74746 0.90744 0.92498 0.92624 0.98574 0.92161 0.94115 0.96456 0.91524 0.89152 0.91018 0.89505 0.89432 0.86470 0.89569 0.94813 0.87020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.55 71.98 0.69 -1.94 16 2 C 0.10 2.20 2.55 31.21 0.08 2.27 16 3 H 0.03 0.82 7.17 -2.39 -0.02 0.80 16 4 C 0.07 1.35 4.41 87.25 0.38 1.74 16 5 N -0.58 -12.10 2.18 -818.81 -1.79 -13.89 16 6 C 0.50 12.96 7.68 87.27 0.67 13.63 16 7 O -0.54 -15.42 15.84 -3.24 -0.05 -15.47 16 8 C 0.50 14.06 7.62 87.27 0.66 14.73 16 9 O -0.52 -16.19 11.38 -3.23 -0.04 -16.22 16 10 N -0.68 -18.81 5.07 -443.75 -2.25 -21.06 16 11 C 0.16 5.24 2.41 45.02 0.11 5.35 16 12 C -0.13 -5.02 5.65 30.67 0.17 -4.85 16 13 C 0.18 8.81 5.32 86.36 0.46 9.27 16 14 N -0.61 -30.07 3.00 -699.12 -2.10 -32.17 16 15 C -0.26 -14.15 9.61 84.03 0.81 -13.35 16 16 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 17 C -0.05 -2.94 4.93 84.86 0.42 -2.52 16 18 N -0.94 -55.36 11.07 21.65 0.24 -55.12 16 19 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C 0.14 5.63 6.51 86.36 0.56 6.19 16 24 C -0.13 -3.85 5.55 30.67 0.17 -3.68 16 25 C 0.10 1.52 6.15 86.51 0.53 2.05 16 26 C -0.15 -1.66 5.79 30.44 0.18 -1.49 16 27 C 0.07 1.02 6.38 71.50 0.46 1.47 16 28 O -0.40 -7.97 9.47 -117.96 -1.12 -9.09 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.11 2.55 5.41 -2.39 -0.01 2.54 16 33 H 0.10 1.62 8.11 -2.39 -0.02 1.60 16 34 H 0.42 10.19 8.09 -92.71 -0.75 9.44 16 35 H 0.07 2.65 7.58 -2.39 -0.02 2.63 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 38 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 39 H 0.06 3.33 5.92 -2.38 -0.01 3.32 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 2.50 7.93 -2.39 -0.02 2.48 16 43 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 45 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 1.46 7.07 -2.39 -0.02 1.44 16 47 H 0.12 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.09 0.92 8.01 -2.39 -0.02 0.90 16 49 H 0.03 0.62 7.41 -2.39 -0.02 0.61 16 50 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -66.37 385.64 1.47 -64.90 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.19 Total: 22.63 kcal Atomic # 6 Polarization: 22.54 SS G_CDS: 6.35 Total: 28.89 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -5.89 Total: -122.24 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -1.20 Total: -40.78 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.37 1.47 -64.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324435788.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.562 kcal (2) G-P(sol) polarization free energy of solvation -66.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds