Wall clock time and date at job start Sat Apr 11 2020 05:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47296 * 2 1 4 4 C 1.54808 * 109.46987 * 119.99463 * 2 1 3 5 5 N 1.45126 * 109.52936 * 187.87119 * 4 2 1 6 6 C 1.34775 * 118.75501 * 90.71253 * 5 4 2 7 7 O 1.21348 * 119.99829 * 174.52466 * 6 5 4 8 8 C 1.49457 * 120.00145 * 354.52033 * 6 5 4 9 9 O 1.21346 * 119.99587 * 354.13361 * 8 6 5 10 10 N 1.34774 * 119.99818 * 174.13429 * 8 6 5 11 11 C 1.46510 * 119.99412 * 180.02562 * 10 8 6 12 12 C 1.53037 * 109.45827 * 275.02465 * 11 10 8 13 13 C 1.53198 * 109.31119 * 178.60376 * 12 11 10 14 14 N 1.46929 * 108.76329 * 54.65623 * 13 12 11 15 15 C 1.36930 * 120.62691 * 126.40446 * 14 13 12 16 16 H 1.07995 * 120.00748 * 331.10739 * 15 14 13 17 17 C 1.38816 * 119.99619 * 151.10355 * 15 14 13 18 18 N 1.31620 * 120.00086 * 166.05856 * 17 15 14 19 19 Si 1.86798 * 120.00278 * 346.05286 * 17 15 14 20 20 H 1.48503 * 109.47155 * 95.31584 * 19 17 15 21 21 H 1.48495 * 109.47644 * 215.32264 * 19 17 15 22 22 H 1.48504 * 109.46872 * 335.32251 * 19 17 15 23 23 C 1.46923 * 118.74047 * 306.38602 * 14 13 12 24 24 C 1.53040 * 109.45560 * 154.97297 * 11 10 8 25 25 C 1.47513 * 122.48775 * 270.72825 * 5 4 2 26 26 C 1.53567 * 111.02769 * 41.63120 * 25 5 4 27 27 C 1.51537 * 109.58537 * 39.97446 * 26 25 5 28 28 O 1.37986 * 109.44849 * 240.01050 * 2 1 3 29 29 H 1.09005 * 109.46803 * 300.00587 * 1 2 3 30 30 H 1.09008 * 109.46759 * 60.00155 * 1 2 3 31 31 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.45824 * 67.85905 * 4 2 1 33 33 H 1.09000 * 109.45949 * 307.88710 * 4 2 1 34 34 H 0.96990 * 120.00267 * 0.02562 * 10 8 6 35 35 H 1.08999 * 109.46283 * 35.00158 * 11 10 8 36 36 H 1.09002 * 109.50352 * 298.56864 * 12 11 10 37 37 H 1.09005 * 109.49988 * 58.67123 * 12 11 10 38 38 H 1.09002 * 109.59483 * 294.86859 * 13 12 11 39 39 H 1.08994 * 109.58554 * 174.44023 * 13 12 11 40 40 H 0.97001 * 120.00419 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.58356 * 293.82206 * 23 14 13 42 42 H 1.08997 * 109.58714 * 173.39573 * 23 14 13 43 43 H 1.08996 * 109.49707 * 301.33469 * 24 11 10 44 44 H 1.09004 * 109.49974 * 61.40147 * 24 11 10 45 45 H 1.08993 * 109.16599 * 162.02773 * 25 5 4 46 46 H 1.08995 * 109.16673 * 281.23416 * 25 5 4 47 47 H 1.08994 * 109.45678 * 160.01074 * 26 25 5 48 48 H 1.09010 * 109.45259 * 279.94136 * 26 25 5 49 49 H 1.08994 * 109.58848 * 28.37808 * 27 26 25 50 50 H 1.09000 * 109.59157 * 148.67481 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 1.2641 5 7 3.4851 -0.5703 1.3627 6 6 3.9755 0.4796 2.0510 7 8 5.1710 0.5809 2.2326 8 6 3.0469 1.5190 2.5904 9 8 1.8649 1.4760 2.3194 10 7 3.5224 2.5040 3.3778 11 6 2.6120 3.5226 3.9071 12 6 2.4344 4.6352 2.8714 13 6 1.4549 5.6807 3.4140 14 7 1.9363 6.1455 4.7220 15 6 2.1112 7.4814 4.9666 16 1 2.3567 8.1513 4.1559 17 6 1.9729 7.9747 6.2567 18 7 2.4014 9.1845 6.5482 19 14 1.1783 6.9216 7.5792 20 1 2.2331 6.2151 8.3496 21 1 0.3919 7.7865 8.4949 22 1 0.2782 5.9255 6.9443 23 6 2.2262 5.1497 5.7627 24 6 3.1967 4.1100 5.1937 25 6 4.4314 -1.5138 0.7380 26 6 3.9596 -1.9187 -0.6662 27 6 3.3874 -0.7095 -1.3781 28 8 1.9894 -0.6504 -1.1269 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8018 -1.7898 1.1965 33 1 1.5720 -0.3035 2.1483 34 1 4.4673 2.5386 3.5941 35 1 1.6446 3.0687 4.1220 36 1 3.3974 5.1063 2.6745 37 1 2.0399 4.2125 1.9473 38 1 0.4673 5.2331 3.5260 39 1 1.4004 6.5230 2.7243 40 1 2.3051 9.5291 7.4498 41 1 1.3015 4.6588 6.0663 42 1 2.6806 5.6416 6.6227 43 1 3.3450 3.3133 5.9227 44 1 4.1528 4.5855 4.9749 45 1 5.4110 -1.0418 0.6641 46 1 4.5107 -2.4055 1.3598 47 1 4.8040 -2.3086 -1.2345 48 1 3.1919 -2.6882 -0.5835 49 1 3.8647 0.1955 -1.0025 50 1 3.5648 -0.7985 -2.4499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324435790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:24 Heat of formation + Delta-G solvation = -69.532821 kcal Electronic energy + Delta-G solvation = -31420.604740 eV Core-core repulsion = 27256.512879 eV Total energy + Delta-G solvation = -4164.091860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -41.40684 -39.67595 -38.70463 -37.71657 -35.92483 -34.75405 -33.93141 -32.22380 -30.75540 -30.55337 -30.22127 -27.49405 -26.63615 -25.38696 -23.95114 -23.03077 -22.07268 -21.74120 -21.11532 -20.19363 -19.57909 -18.05597 -17.52230 -17.00083 -16.81519 -16.64664 -16.04033 -15.82828 -15.58966 -15.15969 -14.63170 -14.40260 -14.25526 -14.06392 -13.90903 -13.76496 -13.24134 -13.18683 -13.14451 -13.01539 -12.70124 -12.43057 -12.38184 -12.04421 -12.01835 -11.86494 -11.69912 -11.39352 -11.35995 -11.06972 -10.98588 -10.82356 -10.61492 -10.37856 -10.06676 -9.95575 -9.85148 -9.49343 -9.44231 -9.10695 -8.91490 -8.71732 -7.01676 -5.96058 -3.37903 1.25033 2.11020 3.01777 3.26467 3.27635 3.39593 3.44243 3.46379 4.17552 4.33428 4.44843 4.48139 4.68436 4.76009 4.83597 4.89988 4.96416 5.03612 5.09739 5.20488 5.21783 5.27017 5.33820 5.35559 5.44504 5.54426 5.55659 5.61382 5.70639 5.73023 5.81743 5.94956 5.95474 5.99338 6.07585 6.09829 6.19259 6.28422 6.45058 6.48606 6.58192 6.59622 6.69000 6.83557 7.17369 7.36770 7.55056 7.89452 7.93385 8.30419 8.89229 9.67550 10.04159 11.19882 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.002660 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.745079 B =10525.639467 C =10947.950577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.095 3.905 3 H 0.056 0.944 4 C 0.062 3.938 5 N -0.585 5.585 6 C 0.500 3.500 7 O -0.521 6.521 8 C 0.503 3.497 9 O -0.514 6.514 10 N -0.689 5.689 11 C 0.149 3.851 12 C -0.142 4.142 13 C 0.153 3.847 14 N -0.607 5.607 15 C -0.260 4.260 16 H 0.087 0.913 17 C 0.021 3.979 18 N -0.914 5.914 19 Si 0.889 3.111 20 H -0.290 1.290 21 H -0.304 1.304 22 H -0.265 1.265 23 C 0.128 3.872 24 C -0.143 4.143 25 C 0.106 3.894 26 C -0.165 4.165 27 C 0.074 3.926 28 O -0.390 6.390 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.409 0.591 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.263 0.737 41 H 0.034 0.966 42 H 0.075 0.925 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.093 0.907 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.485 -24.287 -13.182 27.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.036 3.964 3 H 0.074 0.926 4 C -0.061 4.061 5 N -0.318 5.318 6 C 0.283 3.717 7 O -0.396 6.396 8 C 0.283 3.717 9 O -0.391 6.391 10 N -0.340 5.340 11 C 0.046 3.954 12 C -0.183 4.183 13 C 0.027 3.973 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.104 0.896 17 C -0.178 4.178 18 N -0.557 5.557 19 Si 0.720 3.280 20 H -0.218 1.218 21 H -0.233 1.233 22 H -0.190 1.190 23 C 0.002 3.998 24 C -0.183 4.183 25 C -0.015 4.015 26 C -0.203 4.203 27 C -0.002 4.002 28 O -0.309 6.309 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.096 0.904 33 H 0.140 0.860 34 H 0.245 0.755 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.107 0.893 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.164 -24.195 -13.267 27.618 hybrid contribution 0.457 -0.454 1.157 1.324 sum 1.621 -24.649 -12.110 27.511 Atomic orbital electron populations 1.21666 0.91960 1.02514 1.03199 1.21925 0.95499 0.94979 0.83982 0.92645 1.23150 0.78588 1.01727 1.02658 1.47815 1.07981 1.25047 1.50986 1.20516 0.88553 0.82869 0.79765 1.90749 1.15738 1.76276 1.56869 1.19972 0.88207 0.83041 0.80490 1.90674 1.16228 1.74349 1.57861 1.46184 1.13494 1.26204 1.48087 1.21185 0.93174 0.86993 0.94017 1.22416 1.01803 0.96547 0.97486 1.20882 0.93613 0.95184 0.87663 1.44383 1.76062 1.02880 1.09789 1.18950 1.42218 0.82180 0.95512 0.89555 1.25334 0.99105 0.95596 0.97746 1.69769 1.48563 1.17127 1.20233 0.86908 0.79856 0.79546 0.81694 1.21789 1.23290 1.18970 1.21413 0.95521 0.90021 0.92859 1.22397 1.01360 0.99168 0.95374 1.21951 0.93245 0.92769 0.93544 1.22477 1.02465 0.99967 0.95387 1.22139 0.81228 0.96878 0.99964 1.86248 1.23037 1.77200 1.44393 0.90057 0.91821 0.92177 0.90443 0.85959 0.75513 0.89311 0.91608 0.92135 0.95515 0.91414 0.92723 0.94845 0.90740 0.92016 0.90899 0.88854 0.91043 0.89251 0.90004 0.93177 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.55 37.16 0.35 -0.88 16 2 C 0.10 0.99 2.58 -25.78 -0.07 0.92 16 3 H 0.06 0.69 7.26 -51.93 -0.38 0.31 16 4 C 0.06 0.60 4.41 -3.83 -0.02 0.58 16 5 N -0.58 -6.03 2.19 -172.97 -0.38 -6.41 16 6 C 0.50 6.25 7.68 -11.58 -0.09 6.16 16 7 O -0.52 -7.41 15.83 5.50 0.09 -7.32 16 8 C 0.50 6.61 7.64 -11.58 -0.09 6.52 16 9 O -0.51 -7.11 11.44 5.50 0.06 -7.04 16 10 N -0.69 -9.09 5.07 -54.19 -0.27 -9.36 16 11 C 0.15 2.25 2.42 -67.89 -0.16 2.09 16 12 C -0.14 -2.30 5.65 -26.61 -0.15 -2.46 16 13 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 14 N -0.61 -13.93 2.79 -172.32 -0.48 -14.41 16 15 C -0.26 -7.13 10.08 -15.06 -0.15 -7.28 16 16 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 17 C 0.02 0.59 5.35 -17.43 -0.09 0.50 16 18 N -0.91 -27.80 13.97 55.49 0.78 -27.03 16 19 Si 0.89 21.95 24.30 -169.99 -4.13 17.82 16 20 H -0.29 -6.91 6.79 56.52 0.38 -6.53 16 21 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 22 H -0.26 -6.29 5.86 56.52 0.33 -5.96 16 23 C 0.13 2.65 4.12 -3.71 -0.02 2.64 16 24 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 25 C 0.11 0.86 6.12 -3.19 -0.02 0.84 16 26 C -0.16 -1.06 5.78 -27.18 -0.16 -1.22 16 27 C 0.07 0.61 6.38 36.42 0.23 0.84 16 28 O -0.39 -3.98 9.46 -26.44 -0.25 -4.23 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.65 8.11 -51.93 -0.42 0.23 16 33 H 0.12 1.32 5.33 -51.94 -0.28 1.05 16 34 H 0.41 5.03 8.09 -40.82 -0.33 4.70 16 35 H 0.09 1.41 7.58 -51.93 -0.39 1.01 16 36 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 1.30 7.93 -51.93 -0.41 0.89 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.03 0.69 6.65 -51.93 -0.35 0.34 16 42 H 0.07 1.69 4.31 -51.93 -0.22 1.47 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.09 0.83 7.06 -51.93 -0.37 0.46 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 48 H 0.08 0.53 8.01 -51.92 -0.42 0.12 16 49 H 0.05 0.48 7.40 -51.93 -0.38 0.09 16 50 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 378.30 15.07 5.70 5.70 Total: -1.00 -31.36 378.30 -7.73 -39.09 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -8.24 Total: 3.51 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: -0.60 Total: 9.69 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.36 Total: -57.21 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.10 Total: -18.60 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.13 Total: 17.82 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.36 -7.73 -39.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324435790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.446 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds