Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47296 * 2 1 4 4 C 1.54808 * 109.46987 * 119.99463 * 2 1 3 5 5 N 1.45126 * 109.52936 * 187.87119 * 4 2 1 6 6 C 1.34775 * 118.75501 * 90.71253 * 5 4 2 7 7 O 1.21348 * 119.99829 * 174.52466 * 6 5 4 8 8 C 1.49457 * 120.00145 * 354.52033 * 6 5 4 9 9 O 1.21346 * 119.99587 * 354.13361 * 8 6 5 10 10 N 1.34774 * 119.99818 * 174.13429 * 8 6 5 11 11 C 1.46510 * 119.99412 * 180.02562 * 10 8 6 12 12 C 1.53037 * 109.45827 * 275.02465 * 11 10 8 13 13 C 1.53198 * 109.31119 * 178.60376 * 12 11 10 14 14 N 1.46929 * 108.76329 * 54.65623 * 13 12 11 15 15 C 1.36930 * 120.62691 * 126.40446 * 14 13 12 16 16 H 1.07995 * 120.00748 * 331.10739 * 15 14 13 17 17 C 1.38816 * 119.99619 * 151.10355 * 15 14 13 18 18 N 1.31620 * 120.00086 * 166.05856 * 17 15 14 19 19 Si 1.86798 * 120.00278 * 346.05286 * 17 15 14 20 20 H 1.48503 * 109.47155 * 95.31584 * 19 17 15 21 21 H 1.48495 * 109.47644 * 215.32264 * 19 17 15 22 22 H 1.48504 * 109.46872 * 335.32251 * 19 17 15 23 23 C 1.46923 * 118.74047 * 306.38602 * 14 13 12 24 24 C 1.53040 * 109.45560 * 154.97297 * 11 10 8 25 25 C 1.47513 * 122.48775 * 270.72825 * 5 4 2 26 26 C 1.53567 * 111.02769 * 41.63120 * 25 5 4 27 27 C 1.51537 * 109.58537 * 39.97446 * 26 25 5 28 28 O 1.37986 * 109.44849 * 240.01050 * 2 1 3 29 29 H 1.09005 * 109.46803 * 300.00587 * 1 2 3 30 30 H 1.09008 * 109.46759 * 60.00155 * 1 2 3 31 31 H 1.09000 * 109.47214 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.45824 * 67.85905 * 4 2 1 33 33 H 1.09000 * 109.45949 * 307.88710 * 4 2 1 34 34 H 0.96990 * 120.00267 * 0.02562 * 10 8 6 35 35 H 1.08999 * 109.46283 * 35.00158 * 11 10 8 36 36 H 1.09002 * 109.50352 * 298.56864 * 12 11 10 37 37 H 1.09005 * 109.49988 * 58.67123 * 12 11 10 38 38 H 1.09002 * 109.59483 * 294.86859 * 13 12 11 39 39 H 1.08994 * 109.58554 * 174.44023 * 13 12 11 40 40 H 0.97001 * 120.00419 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.58356 * 293.82206 * 23 14 13 42 42 H 1.08997 * 109.58714 * 173.39573 * 23 14 13 43 43 H 1.08996 * 109.49707 * 301.33469 * 24 11 10 44 44 H 1.09004 * 109.49974 * 61.40147 * 24 11 10 45 45 H 1.08993 * 109.16599 * 162.02773 * 25 5 4 46 46 H 1.08995 * 109.16673 * 281.23416 * 25 5 4 47 47 H 1.08994 * 109.45678 * 160.01074 * 26 25 5 48 48 H 1.09010 * 109.45259 * 279.94136 * 26 25 5 49 49 H 1.08994 * 109.58848 * 28.37808 * 27 26 25 50 50 H 1.09000 * 109.59157 * 148.67481 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0460 -0.7297 1.2641 5 7 3.4851 -0.5703 1.3627 6 6 3.9755 0.4796 2.0510 7 8 5.1710 0.5809 2.2326 8 6 3.0469 1.5190 2.5904 9 8 1.8649 1.4760 2.3194 10 7 3.5224 2.5040 3.3778 11 6 2.6120 3.5226 3.9071 12 6 2.4344 4.6352 2.8714 13 6 1.4549 5.6807 3.4140 14 7 1.9363 6.1455 4.7220 15 6 2.1112 7.4814 4.9666 16 1 2.3567 8.1513 4.1559 17 6 1.9729 7.9747 6.2567 18 7 2.4014 9.1845 6.5482 19 14 1.1783 6.9216 7.5792 20 1 2.2331 6.2151 8.3496 21 1 0.3919 7.7865 8.4949 22 1 0.2782 5.9255 6.9443 23 6 2.2262 5.1497 5.7627 24 6 3.1967 4.1100 5.1937 25 6 4.4314 -1.5138 0.7380 26 6 3.9596 -1.9187 -0.6662 27 6 3.3874 -0.7095 -1.3781 28 8 1.9894 -0.6504 -1.1269 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.8018 -1.7898 1.1965 33 1 1.5720 -0.3035 2.1483 34 1 4.4673 2.5386 3.5941 35 1 1.6446 3.0687 4.1220 36 1 3.3974 5.1063 2.6745 37 1 2.0399 4.2125 1.9473 38 1 0.4673 5.2331 3.5260 39 1 1.4004 6.5230 2.7243 40 1 2.3051 9.5291 7.4498 41 1 1.3015 4.6588 6.0663 42 1 2.6806 5.6416 6.6227 43 1 3.3450 3.3133 5.9227 44 1 4.1528 4.5855 4.9749 45 1 5.4110 -1.0418 0.6641 46 1 4.5107 -2.4055 1.3598 47 1 4.8040 -2.3086 -1.2345 48 1 3.1919 -2.6882 -0.5835 49 1 3.8647 0.1955 -1.0025 50 1 3.5648 -0.7985 -2.4499 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324435790.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -91.372764 kcal Electronic energy + Delta-G solvation = -31421.551791 eV Core-core repulsion = 27256.512879 eV Total energy + Delta-G solvation = -4165.038911 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33422 -40.64925 -39.71645 -39.05838 -36.88044 -35.99771 -34.69860 -34.05039 -32.04609 -31.90379 -31.44790 -28.23249 -27.67613 -26.75062 -25.19521 -24.48684 -23.42942 -22.59770 -21.99909 -21.39155 -20.78831 -19.19797 -18.62684 -18.37483 -17.74535 -17.65975 -17.29140 -16.81859 -16.61954 -16.38985 -15.97987 -15.64462 -15.46764 -15.38378 -14.93016 -14.83330 -14.61740 -14.43347 -14.16051 -13.95256 -13.90475 -13.77778 -13.50293 -13.44342 -13.12353 -12.78405 -12.66440 -12.54739 -12.40694 -12.24563 -12.21232 -12.03516 -11.99723 -11.79684 -11.54469 -11.48944 -11.35416 -10.81142 -10.71253 -10.44322 -10.20184 -9.78398 -8.94437 -8.14513 -5.52836 0.25374 1.18797 1.30915 1.43814 1.51806 2.01904 2.32241 2.41992 2.70274 3.09738 3.17367 3.31574 3.69213 3.71103 3.81053 3.90938 4.01234 4.08648 4.11864 4.16775 4.28492 4.31158 4.41103 4.45786 4.48329 4.57391 4.60953 4.66797 4.73492 4.76684 4.82370 4.87930 4.88663 4.96111 5.01581 5.05074 5.06625 5.12525 5.14282 5.22962 5.31618 5.37698 5.39181 5.79711 5.87278 6.12872 6.17100 6.56640 6.66273 6.87054 6.90462 7.60392 8.00011 9.05271 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023102 B = 0.002660 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.745079 B =10525.639467 C =10947.950577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.098 3.902 3 H 0.030 0.970 4 C 0.064 3.936 5 N -0.578 5.578 6 C 0.500 3.500 7 O -0.542 6.542 8 C 0.503 3.497 9 O -0.520 6.520 10 N -0.685 5.685 11 C 0.161 3.839 12 C -0.130 4.130 13 C 0.150 3.850 14 N -0.621 5.621 15 C -0.248 4.248 16 H 0.050 0.950 17 C -0.041 4.041 18 N -0.965 5.965 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.316 1.316 22 H -0.247 1.247 23 C 0.121 3.879 24 C -0.133 4.133 25 C 0.101 3.899 26 C -0.154 4.154 27 C 0.067 3.933 28 O -0.399 6.399 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.415 0.585 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.115 0.885 48 H 0.087 0.913 49 H 0.032 0.968 50 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.208 -28.171 -13.693 31.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.039 3.961 3 H 0.048 0.952 4 C -0.058 4.058 5 N -0.310 5.310 6 C 0.282 3.718 7 O -0.420 6.420 8 C 0.284 3.716 9 O -0.397 6.397 10 N -0.336 5.336 11 C 0.057 3.943 12 C -0.170 4.170 13 C 0.025 3.975 14 N -0.346 5.346 15 C -0.377 4.377 16 H 0.068 0.932 17 C -0.235 4.235 18 N -0.611 5.611 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.246 1.246 22 H -0.171 1.171 23 C -0.005 4.005 24 C -0.172 4.172 25 C -0.019 4.019 26 C -0.192 4.192 27 C -0.009 4.009 28 O -0.318 6.318 29 H 0.095 0.905 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.252 0.748 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.086 0.914 45 H 0.103 0.897 46 H 0.106 0.894 47 H 0.133 0.867 48 H 0.106 0.894 49 H 0.050 0.950 50 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.885 -28.159 -13.825 31.382 hybrid contribution 0.559 0.728 1.140 1.464 sum 1.444 -27.431 -12.684 30.256 Atomic orbital electron populations 1.21637 0.91160 1.03322 1.02878 1.21841 0.96154 0.93693 0.84412 0.95244 1.23137 0.78064 1.02735 1.01875 1.47952 1.08640 1.24494 1.49904 1.20353 0.88044 0.83224 0.80140 1.90743 1.16335 1.76865 1.58096 1.20139 0.88247 0.83080 0.80180 1.90684 1.16572 1.74524 1.57930 1.45972 1.13497 1.25852 1.48289 1.20898 0.93499 0.86888 0.93020 1.22238 1.00465 0.96087 0.98219 1.21001 0.94908 0.95726 0.85911 1.44488 1.76819 1.01711 1.11576 1.18862 1.40353 0.84064 0.94457 0.93193 1.26027 1.00191 0.96944 1.00310 1.69922 1.50913 1.19501 1.20772 0.85857 0.79149 0.78004 0.78700 1.20163 1.24607 1.17079 1.21473 0.96856 0.90259 0.91868 1.22218 0.99747 0.98739 0.96505 1.22177 0.92373 0.92636 0.94763 1.22431 1.03452 0.99073 0.94236 1.22340 0.80243 0.96966 1.01322 1.86239 1.24237 1.77009 1.44335 0.90504 0.92023 0.90780 0.88458 0.86870 0.74830 0.89194 0.92468 0.90965 0.94265 0.92432 0.92988 0.93770 0.92738 0.89050 0.91377 0.89689 0.89390 0.86665 0.89408 0.94958 0.87247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 9.55 71.98 0.69 -1.51 16 2 C 0.10 1.89 2.58 31.21 0.08 1.97 16 3 H 0.03 0.72 7.26 -2.39 -0.02 0.70 16 4 C 0.06 1.11 4.41 87.25 0.38 1.50 16 5 N -0.58 -10.77 2.19 -819.53 -1.80 -12.57 16 6 C 0.50 11.74 7.68 87.27 0.67 12.41 16 7 O -0.54 -14.74 15.83 -3.24 -0.05 -14.79 16 8 C 0.50 12.37 7.64 87.27 0.67 13.04 16 9 O -0.52 -13.49 11.44 -3.23 -0.04 -13.52 16 10 N -0.68 -16.69 5.07 -443.72 -2.25 -18.94 16 11 C 0.16 4.49 2.42 45.02 0.11 4.60 16 12 C -0.13 -4.04 5.65 30.67 0.17 -3.87 16 13 C 0.15 5.64 6.52 86.36 0.56 6.20 16 14 N -0.62 -28.25 2.79 -699.09 -1.95 -30.19 16 15 C -0.25 -13.90 10.08 84.04 0.85 -13.06 16 16 H 0.05 3.10 8.06 -2.91 -0.02 3.07 16 17 C -0.04 -2.36 5.35 84.86 0.45 -1.91 16 18 N -0.96 -60.74 13.97 21.65 0.30 -60.44 16 19 Si 0.95 45.60 24.30 68.60 1.67 47.26 16 20 H -0.27 -12.34 6.79 99.48 0.68 -11.66 16 21 H -0.32 -15.64 7.11 99.48 0.71 -14.93 16 22 H -0.25 -10.93 5.86 99.48 0.58 -10.35 16 23 C 0.12 4.76 4.12 86.36 0.36 5.12 16 24 C -0.13 -4.01 5.55 30.67 0.17 -3.84 16 25 C 0.10 1.38 6.12 86.38 0.53 1.91 16 26 C -0.15 -1.51 5.78 30.31 0.18 -1.33 16 27 C 0.07 0.96 6.38 71.50 0.46 1.42 16 28 O -0.40 -7.38 9.46 -117.51 -1.11 -8.49 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.10 1.32 8.11 -2.38 -0.02 1.31 16 33 H 0.11 2.22 5.33 -2.49 -0.01 2.21 16 34 H 0.41 9.41 8.09 -92.72 -0.75 8.66 16 35 H 0.09 2.58 7.58 -2.39 -0.02 2.56 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.09 8.14 -2.38 -0.02 2.08 16 38 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 2.24 7.93 -2.39 -0.02 2.22 16 40 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 41 H 0.04 1.67 6.65 -2.38 -0.02 1.65 16 42 H 0.05 2.39 4.31 -2.39 -0.01 2.38 16 43 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.08 1.35 7.06 -2.39 -0.02 1.33 16 46 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 48 H 0.09 0.82 8.01 -2.38 -0.02 0.80 16 49 H 0.03 0.58 7.40 -2.39 -0.02 0.56 16 50 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -69.17 378.30 1.14 -68.03 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.04 Total: 21.01 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 6.32 Total: 22.66 kcal Atomic # 7 Polarization: -116.45 SS G_CDS: -5.69 Total: -122.14 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -1.20 Total: -36.81 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.67 Total: 47.26 kcal Total: -69.17 1.14 -68.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324435790.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.347 kcal (2) G-P(sol) polarization free energy of solvation -69.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds