Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 110.88151 * 2 1 4 4 C 1.55132 * 111.19072 * 236.07152 * 2 1 3 5 5 N 1.47427 * 104.72081 * 279.18776 * 4 2 1 6 6 C 1.34774 * 125.64611 * 155.81977 * 5 4 2 7 7 O 1.21283 * 119.99646 * 179.69267 * 6 5 4 8 8 C 1.50703 * 120.00140 * 359.69046 * 6 5 4 9 9 C 1.53001 * 109.46988 * 180.02562 * 8 6 5 10 10 O 1.42906 * 112.84870 * 53.80474 * 9 8 6 11 11 C 1.53781 * 113.61341 * 184.99951 * 9 8 6 12 12 C 1.53781 * 87.08070 * 140.06609 * 11 9 8 13 13 C 1.53786 * 87.17350 * 334.52830 * 12 11 9 14 14 C 1.47020 * 108.70399 * 335.55464 * 5 4 2 15 15 C 1.54323 * 107.27098 * 1.28673 * 14 5 4 16 16 H 1.08998 * 110.72147 * 263.65016 * 15 14 5 17 17 N 1.46908 * 110.71990 * 140.55587 * 15 14 5 18 18 C 1.46900 * 110.99809 * 86.45487 * 17 15 14 19 19 C 1.50699 * 109.46941 * 180.02562 * 18 17 15 20 20 O 1.21293 * 119.99864 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00223 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00224 * 180.02562 * 21 19 18 23 23 H 1.08004 * 119.99700 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00219 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00185 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 119.99786 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.46915 * 90.00303 * 26 24 22 28 28 H 1.48503 * 109.47305 * 210.00355 * 26 24 22 29 29 H 1.48499 * 109.47267 * 330.00647 * 26 24 22 30 30 H 1.08997 * 109.47016 * 296.11322 * 1 2 3 31 31 H 1.08999 * 109.47558 * 56.11818 * 1 2 3 32 32 H 1.09003 * 109.47047 * 176.12039 * 1 2 3 33 33 H 1.08997 * 110.49277 * 160.34621 * 4 2 1 34 34 H 1.09001 * 110.34071 * 37.95351 * 4 2 1 35 35 H 1.08999 * 109.46893 * 60.00503 * 8 6 5 36 36 H 1.08998 * 109.46902 * 300.00224 * 8 6 5 37 37 H 0.96701 * 114.00125 * 311.19362 * 10 9 8 38 38 H 1.08999 * 113.61181 * 25.51665 * 11 9 8 39 39 H 1.08998 * 113.61680 * 254.61217 * 11 9 8 40 40 H 1.09002 * 113.61445 * 89.11830 * 12 11 9 41 41 H 1.09002 * 113.61408 * 219.93560 * 12 11 9 42 42 H 1.08992 * 113.61675 * 140.02412 * 13 12 11 43 43 H 1.09000 * 113.60973 * 270.92699 * 13 12 11 44 44 H 1.09007 * 109.88163 * 120.70087 * 14 5 4 45 45 H 1.08998 * 109.88409 * 241.71765 * 14 5 4 46 46 H 1.00903 * 110.99612 * 210.40578 * 17 15 14 47 47 H 1.08994 * 109.47151 * 299.99681 * 18 17 15 48 48 H 1.09001 * 109.47154 * 60.00041 * 18 17 15 49 49 H 0.96998 * 119.99721 * 359.97438 * 21 19 18 50 50 H 0.97004 * 119.99546 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0908 -0.8073 -1.2002 5 7 2.0139 -2.2162 -0.7726 6 6 1.9472 -3.2834 -1.5929 7 8 1.8927 -4.4025 -1.1287 8 6 1.9402 -3.0861 -3.0870 9 6 1.8585 -4.4474 -3.7807 10 8 0.7569 -5.2364 -3.3267 11 6 1.9678 -4.3657 -5.3125 12 6 2.8365 -5.6326 -5.2394 13 6 3.1961 -5.2112 -3.8048 14 6 2.0286 -2.2644 0.6967 15 6 2.0862 -0.8075 1.2024 16 1 3.1130 -0.5165 1.4240 17 7 1.2320 -0.6337 2.3849 18 6 1.9592 -0.9760 3.6146 19 6 1.0528 -0.7864 4.8035 20 8 -0.0867 -0.4034 4.6423 21 7 1.5087 -1.0415 6.0459 22 6 0.6839 -0.8696 7.1274 23 1 -0.3310 -0.5293 6.9838 24 6 1.1537 -1.1331 8.4082 25 7 0.3633 -0.9678 9.4450 26 14 2.9089 -1.7224 8.6564 27 1 3.8033 -0.5509 8.8379 28 1 2.9750 -2.5871 9.8619 29 1 3.3437 -2.4975 7.4667 30 1 -0.3633 0.4523 0.9227 31 1 -0.3634 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1252 -0.5270 -1.3986 34 1 1.4764 -0.6456 -2.0858 35 1 2.8552 -2.5776 -3.3906 36 1 1.0779 -2.4823 -3.3697 37 1 0.6829 -5.2916 -2.3641 38 1 2.5068 -3.4865 -5.6654 39 1 1.0186 -4.5162 -5.8266 40 1 2.2636 -6.5584 -5.2919 41 1 3.6848 -5.6203 -5.9237 42 1 3.2378 -6.0438 -3.1027 43 1 4.0703 -4.5628 -3.7464 44 1 1.1219 -2.7476 1.0608 45 1 2.9050 -2.8136 1.0409 46 1 0.8653 0.3052 2.4312 47 1 2.2834 -2.0155 3.5675 48 1 2.8300 -0.3279 3.7141 49 1 2.4201 -1.3475 6.1748 50 1 0.6913 -1.1522 10.3391 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327840810.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = -114.295165 kcal Electronic energy + Delta-G solvation = -29874.944920 eV Core-core repulsion = 25708.912018 eV Total energy + Delta-G solvation = -4166.032901 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -41.66826 -40.56911 -40.05915 -38.77705 -36.26646 -35.67462 -35.39626 -33.77218 -33.15832 -31.71067 -29.77054 -27.97738 -27.59551 -26.63963 -25.77840 -24.42075 -23.15034 -21.33221 -20.82240 -20.54908 -20.49983 -20.12216 -18.32489 -17.77547 -17.61062 -17.25779 -16.91672 -16.64513 -16.51424 -16.27962 -15.94892 -15.66950 -15.47009 -15.06950 -14.92283 -14.54031 -14.47665 -14.38125 -14.03682 -13.95526 -13.75384 -13.40664 -13.22835 -13.21025 -13.14101 -12.99763 -12.86999 -12.53602 -12.43077 -12.15068 -12.05386 -11.98725 -11.82193 -11.76156 -11.57654 -11.52108 -11.40500 -10.76477 -10.60381 -10.44339 -10.26040 -9.69160 -9.39232 -8.42450 -6.03305 1.29411 1.34076 1.43375 1.53094 1.88263 1.94632 2.21780 2.71594 3.14129 3.14749 3.27431 3.36691 3.49057 3.62165 3.67648 3.72041 3.92868 4.06582 4.10565 4.15064 4.27759 4.28596 4.40016 4.42812 4.49242 4.54419 4.59730 4.64792 4.72977 4.77891 4.79903 4.84709 4.88241 4.95248 5.05472 5.06082 5.14199 5.17261 5.28081 5.31891 5.45231 5.51010 5.52926 5.89317 6.02979 6.35691 6.45865 6.58387 6.70982 6.86966 7.11197 7.38607 7.95028 8.75136 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.002062 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.917346 B =13574.452055 C =14282.430623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 H 0.121 0.879 4 C 0.102 3.898 5 N -0.610 5.610 6 C 0.522 3.478 7 O -0.587 6.587 8 C -0.146 4.146 9 C 0.108 3.892 10 O -0.571 6.571 11 C -0.117 4.117 12 C -0.136 4.136 13 C -0.164 4.164 14 C 0.115 3.885 15 C 0.081 3.919 16 H 0.087 0.913 17 N -0.674 5.674 18 C 0.061 3.939 19 C 0.448 3.552 20 O -0.613 6.613 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.254 1.254 28 H -0.277 1.277 29 H -0.234 1.234 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.032 0.968 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.139 0.861 36 H 0.118 0.882 37 H 0.384 0.616 38 H 0.126 0.874 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.102 0.898 44 H 0.046 0.954 45 H 0.060 0.940 46 H 0.354 0.646 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.389 0.611 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.332 0.854 -32.215 35.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.117 4.117 3 H 0.139 0.861 4 C -0.019 4.019 5 N -0.342 5.342 6 C 0.313 3.687 7 O -0.469 6.469 8 C -0.186 4.186 9 C 0.067 3.933 10 O -0.383 6.383 11 C -0.154 4.154 12 C -0.174 4.174 13 C -0.202 4.202 14 C -0.009 4.009 15 C -0.029 4.029 16 H 0.104 0.896 17 N -0.309 5.309 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.497 6.497 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.073 0.927 24 C -0.215 4.215 25 N -0.575 5.575 26 Si 0.785 3.215 27 H -0.178 1.178 28 H -0.202 1.202 29 H -0.157 1.157 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.052 0.948 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.238 0.762 38 H 0.145 0.855 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.121 0.879 44 H 0.065 0.935 45 H 0.079 0.921 46 H 0.176 0.824 47 H 0.122 0.878 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.095 -0.202 -32.580 35.114 hybrid contribution 0.720 0.040 2.169 2.286 sum 13.815 -0.162 -30.411 33.402 Atomic orbital electron populations 1.21567 0.94420 1.01061 1.02037 1.22602 0.96382 1.00150 0.92563 0.86086 1.22780 1.03192 0.77884 0.98089 1.48517 1.71630 1.07738 1.06360 1.21007 0.74928 0.82947 0.89840 1.90570 1.52793 1.25150 1.78433 1.22350 1.07531 0.99982 0.88723 1.22251 0.86883 0.88517 0.95658 1.86313 1.49515 1.72950 1.29496 1.23124 1.00916 0.99770 0.91591 1.22736 1.00215 0.97860 0.96549 1.23657 0.98122 1.00700 0.97713 1.21877 1.00950 0.97817 0.80283 1.22613 0.96337 0.93791 0.90146 0.89565 1.59982 1.36740 1.33997 1.00207 1.21687 0.94273 1.03688 0.87473 1.20984 0.89008 0.81742 0.84631 1.90548 1.21959 1.51349 1.85889 1.42042 1.13861 1.61790 1.05625 1.19000 0.96596 1.44623 0.85534 0.92667 1.26127 1.04380 0.97036 0.93947 1.69807 1.38896 1.49133 0.99629 0.85361 0.76860 0.79527 0.79741 1.17810 1.20189 1.15694 0.93133 0.90731 0.94834 0.87883 0.87888 0.84335 0.86417 0.76241 0.85539 0.91136 0.91665 0.89377 0.93468 0.87927 0.93501 0.92136 0.82378 0.87826 0.89660 0.77511 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.76 71.98 0.63 -1.65 16 2 C -0.10 -1.16 3.46 -9.32 -0.03 -1.19 16 3 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 4 C 0.10 0.85 6.17 86.93 0.54 1.39 16 5 N -0.61 -10.32 3.31 -811.34 -2.69 -13.00 16 6 C 0.52 10.32 7.60 87.66 0.67 10.99 16 7 O -0.59 -16.85 13.93 15.90 0.22 -16.63 16 8 C -0.15 -1.70 4.35 29.85 0.13 -1.57 16 9 C 0.11 1.79 1.10 -10.18 -0.01 1.78 16 10 O -0.57 -14.12 13.40 -130.04 -1.74 -15.86 16 11 C -0.12 -1.32 7.47 31.12 0.23 -1.08 16 12 C -0.14 -1.83 8.01 31.12 0.25 -1.58 16 13 C -0.16 -2.64 7.19 31.21 0.22 -2.42 16 14 C 0.11 2.50 6.23 86.73 0.54 3.04 16 15 C 0.08 1.42 3.03 46.10 0.14 1.56 16 16 H 0.09 1.14 7.89 -2.39 -0.02 1.12 16 17 N -0.67 -17.82 5.12 -489.44 -2.51 -20.33 16 18 C 0.06 1.76 6.02 85.56 0.52 2.27 16 19 C 0.45 19.86 7.82 87.66 0.69 20.55 16 20 O -0.61 -33.51 15.78 -3.07 -0.05 -33.56 16 21 N -0.59 -27.71 5.09 -306.99 -1.56 -29.28 16 22 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 23 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 25 N -0.93 -56.54 13.96 21.66 0.30 -56.24 16 26 Si 0.97 38.85 27.74 68.60 1.90 40.76 16 27 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 28 H -0.28 -11.15 7.11 99.48 0.71 -10.45 16 29 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 30 H 0.05 1.10 6.69 -2.39 -0.02 1.09 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 0.74 7.91 -2.39 -0.02 0.73 16 33 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.10 0.46 7.40 -2.39 -0.02 0.44 16 35 H 0.14 0.63 8.06 -2.39 -0.02 0.61 16 36 H 0.12 1.02 7.85 -2.39 -0.02 1.00 16 37 H 0.38 10.32 6.18 -74.06 -0.46 9.87 16 38 H 0.13 0.57 8.10 -2.39 -0.02 0.55 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 1.19 8.05 -2.39 -0.02 1.17 16 44 H 0.05 1.39 8.03 -2.38 -0.02 1.37 16 45 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.35 9.72 6.99 -89.69 -0.63 9.09 16 47 H 0.10 2.71 8.13 -2.39 -0.02 2.69 16 48 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 49 H 0.39 15.08 5.76 -92.71 -0.53 14.54 16 50 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -84.75 397.88 -1.00 -85.75 By element: Atomic # 1 Polarization: 45.86 SS G_CDS: -0.71 Total: 45.15 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 5.83 Total: 13.24 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -6.45 Total: -118.85 kcal Atomic # 8 Polarization: -64.47 SS G_CDS: -1.57 Total: -66.04 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 1.90 Total: 40.76 kcal Total: -84.75 -1.00 -85.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840810.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.550 kcal (2) G-P(sol) polarization free energy of solvation -84.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds