Wall clock time and date at job start Sat Apr 11 2020 05:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.30183 * 2 1 4 4 C 1.54385 * 110.43034 * 122.23457 * 2 1 3 5 5 N 1.48144 * 104.61907 * 142.78427 * 4 2 1 6 6 C 1.34775 * 127.83969 * 140.41308 * 5 4 2 7 7 O 1.21282 * 119.99469 * 179.97438 * 6 5 4 8 8 C 1.50692 * 120.00116 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.47132 * 180.02562 * 8 6 5 10 10 O 1.42896 * 112.84980 * 55.33140 * 9 8 6 11 11 C 1.53777 * 113.61408 * 284.13150 * 9 8 6 12 12 C 1.53947 * 87.02422 * 220.04999 * 11 9 8 13 13 C 1.53784 * 87.11250 * 25.36356 * 12 11 9 14 14 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 15 15 C 1.54277 * 110.34094 * 237.82396 * 2 1 3 16 16 H 1.09000 * 110.34806 * 359.89474 * 15 2 1 17 17 N 1.46901 * 110.43482 * 122.10992 * 15 2 1 18 18 C 1.46897 * 111.00412 * 202.04202 * 17 15 2 19 19 C 1.50696 * 109.47076 * 179.97438 * 18 17 15 20 20 O 1.21287 * 120.00534 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99939 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00257 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99809 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99874 * 180.02562 * 22 21 19 25 25 N 1.31404 * 120.00571 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99565 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47564 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47063 * 119.99792 * 26 24 22 29 29 H 1.48500 * 109.47182 * 239.99826 * 26 24 22 30 30 H 1.09002 * 109.47188 * 182.17739 * 1 2 3 31 31 H 1.09001 * 109.47097 * 302.17447 * 1 2 3 32 32 H 1.09000 * 109.46954 * 62.17382 * 1 2 3 33 33 H 1.09004 * 110.40869 * 261.56755 * 4 2 1 34 34 H 1.09003 * 110.41159 * 23.87778 * 4 2 1 35 35 H 1.09005 * 109.47336 * 299.99781 * 8 6 5 36 36 H 1.09005 * 109.47508 * 59.99878 * 8 6 5 37 37 H 0.96700 * 114.00105 * 309.66562 * 10 9 8 38 38 H 1.09004 * 113.61818 * 334.57275 * 11 9 8 39 39 H 1.09005 * 113.61483 * 105.47012 * 11 9 8 40 40 H 1.09008 * 113.54097 * 270.81327 * 12 11 9 41 41 H 1.08999 * 113.74706 * 139.94219 * 12 11 9 42 42 H 1.08997 * 113.61668 * 220.09527 * 13 12 11 43 43 H 1.09001 * 113.61307 * 89.18149 * 13 12 11 44 44 H 1.08992 * 110.40889 * 280.80306 * 14 5 4 45 45 H 1.09000 * 110.40506 * 158.36626 * 14 5 4 46 46 H 1.00899 * 110.99835 * 78.08231 * 17 15 2 47 47 H 1.08994 * 109.47165 * 299.99762 * 18 17 15 48 48 H 1.09000 * 109.46757 * 59.99630 * 18 17 15 49 49 H 0.97000 * 119.99927 * 359.97438 * 21 19 18 50 50 H 0.96997 * 120.00201 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0689 -0.7717 1.2238 5 7 3.2692 -1.4794 0.7206 6 6 4.4461 -1.6626 1.3514 7 8 5.3405 -2.2699 0.8018 8 6 4.6501 -1.1139 2.7400 9 6 6.0611 -1.4573 3.2218 10 8 7.0788 -1.0034 2.3272 11 6 6.2260 -2.9254 3.6486 12 6 7.0894 -2.4064 4.8127 13 6 6.3192 -1.0809 4.6904 14 6 2.8824 -1.9401 -0.6332 15 6 2.0663 -0.7703 -1.2244 16 1 1.2398 -1.1503 -1.8249 17 7 2.9307 0.0959 -2.0371 18 6 3.0246 -0.3993 -3.4168 19 6 3.9168 0.5130 -4.2184 20 8 4.4249 1.4804 -3.6920 21 7 4.1502 0.2541 -5.5203 22 6 4.9623 1.0838 -6.2494 23 1 5.4147 1.9452 -5.7806 24 6 5.2025 0.8170 -7.5918 25 7 4.6516 -0.2307 -8.1623 26 14 6.3084 1.9480 -8.5853 27 1 6.8002 3.0477 -7.7170 28 1 7.4638 1.1758 -9.1089 29 1 5.5402 2.5199 -9.7202 30 1 -0.3634 -1.0269 0.0390 31 1 -0.3633 0.5472 0.8699 32 1 -0.3633 0.4797 -0.9088 33 1 2.3420 -0.0790 2.0198 34 1 1.3263 -1.4854 1.5804 35 1 4.5253 -0.0311 2.7248 36 1 3.9175 -1.5546 3.4162 37 1 6.9339 -1.2572 1.4054 38 1 5.2957 -3.3939 3.9700 39 1 6.7789 -3.5298 2.9294 40 1 8.1476 -2.3209 4.5655 41 1 6.9155 -2.9271 5.7543 42 1 6.9472 -0.1983 4.8110 43 1 5.4144 -1.0441 5.2972 44 1 2.2676 -2.8377 -0.5680 45 1 3.7692 -2.1288 -1.2383 46 1 3.8459 0.1854 -1.6219 47 1 3.4424 -1.4060 -3.4139 48 1 2.0307 -0.4198 -3.8639 49 1 3.7442 -0.5198 -5.9413 50 1 4.8196 -0.4171 -9.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327840813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:38 Heat of formation + Delta-G solvation = -95.809683 kcal Electronic energy + Delta-G solvation = -30128.383894 eV Core-core repulsion = 25963.152583 eV Total energy + Delta-G solvation = -4165.231311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.82670 -39.62404 -38.29577 -37.72171 -34.73473 -34.51469 -33.77782 -32.74055 -31.21986 -30.92514 -28.65488 -26.65156 -26.25975 -25.97648 -24.37529 -23.49618 -22.40467 -20.35709 -19.81762 -19.67523 -19.14792 -17.87955 -17.46977 -16.67403 -16.44148 -16.06848 -15.90650 -15.47092 -15.10282 -15.06727 -14.83773 -14.51893 -14.15226 -14.13593 -13.75241 -13.50301 -13.38960 -13.11678 -12.81414 -12.68085 -12.66955 -12.44501 -12.14225 -12.10259 -11.80650 -11.61977 -11.55216 -11.43451 -11.22392 -11.12714 -11.09628 -11.05924 -10.92312 -10.67621 -10.33109 -10.21434 -9.92825 -9.84185 -9.51328 -9.14257 -8.45710 -8.07220 -7.95281 -6.40939 -3.81573 2.33992 2.63219 3.17508 3.28075 3.35614 3.88270 3.90912 4.00524 4.06796 4.25903 4.29854 4.30623 4.39790 4.50047 4.59614 4.77305 4.83203 4.95854 4.99406 5.10106 5.13459 5.15789 5.20330 5.25764 5.29019 5.34743 5.38209 5.46529 5.47552 5.49931 5.55034 5.66518 5.73329 5.84148 5.85751 5.87027 5.96485 5.97603 5.99866 6.11173 6.12082 6.28890 7.16147 7.25290 7.56362 7.56663 7.63195 7.93239 8.07216 8.61815 9.18893 9.54851 10.06154 10.76902 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.002488 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.310209 B =11251.842029 C =12863.808489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.097 0.903 4 C 0.101 3.899 5 N -0.619 5.619 6 C 0.537 3.463 7 O -0.541 6.541 8 C -0.158 4.158 9 C 0.128 3.872 10 O -0.547 6.547 11 C -0.161 4.161 12 C -0.135 4.135 13 C -0.128 4.128 14 C 0.070 3.930 15 C 0.078 3.922 16 H 0.096 0.904 17 N -0.656 5.656 18 C 0.048 3.952 19 C 0.441 3.559 20 O -0.583 6.583 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.281 1.281 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.391 0.609 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.352 0.648 47 H 0.044 0.956 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -6.592 24.478 26.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.119 4.119 3 H 0.115 0.885 4 C -0.022 4.022 5 N -0.352 5.352 6 C 0.327 3.673 7 O -0.420 6.420 8 C -0.198 4.198 9 C 0.086 3.914 10 O -0.358 6.358 11 C -0.199 4.199 12 C -0.172 4.172 13 C -0.165 4.165 14 C -0.054 4.054 15 C -0.034 4.034 16 H 0.114 0.886 17 N -0.287 5.287 18 C -0.084 4.084 19 C 0.226 3.774 20 O -0.467 6.467 21 N -0.200 5.200 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.246 0.754 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.110 0.890 44 H 0.092 0.908 45 H 0.103 0.897 46 H 0.172 0.828 47 H 0.062 0.938 48 H 0.106 0.894 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.536 -5.638 24.761 26.489 hybrid contribution 0.410 -1.056 -1.353 1.765 sum -7.125 -6.693 23.407 25.367 Atomic orbital electron populations 1.21780 0.93637 1.01758 1.02548 1.22168 0.96177 1.00917 0.92624 0.88463 1.22616 0.86607 0.95533 0.97416 1.48962 1.13069 1.55578 1.17612 1.20320 0.80371 0.79109 0.87492 1.90616 1.41092 1.42437 1.67852 1.22339 0.99810 1.03672 0.94002 1.21805 0.85099 0.94255 0.90254 1.86349 1.47162 1.79241 1.23061 1.23599 1.00495 0.97111 0.98720 1.22773 0.99679 0.96434 0.98339 1.23055 1.01084 0.99112 0.93282 1.23243 1.00217 0.98117 0.83861 1.22689 0.96089 0.90504 0.94157 0.88557 1.60226 1.18681 1.48669 1.01160 1.21734 1.00627 0.96404 0.89672 1.19774 0.86193 0.88158 0.83267 1.90529 1.54567 1.30967 1.70605 1.41865 1.43616 1.26477 1.08063 1.19750 1.23529 1.07675 0.91784 0.87882 1.25262 0.98360 0.97279 0.97084 1.69614 1.44391 1.27084 1.13246 0.85801 0.79368 0.79853 0.79339 1.19204 1.20750 1.20746 0.92653 0.92377 0.91598 0.90164 0.90752 0.87908 0.87929 0.75440 0.90027 0.90503 0.89763 0.91439 0.90353 0.88968 0.90845 0.89678 0.82773 0.93801 0.89447 0.77477 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.93 37.16 0.33 -0.63 16 2 C -0.10 -0.87 3.45 -89.22 -0.31 -1.18 16 3 H 0.10 1.04 7.95 -51.93 -0.41 0.63 16 4 C 0.10 0.74 6.46 -2.41 -0.02 0.73 16 5 N -0.62 -6.39 3.32 -169.31 -0.56 -6.95 16 6 C 0.54 6.31 7.65 -10.99 -0.08 6.23 16 7 O -0.54 -8.22 13.90 -13.58 -0.19 -8.41 16 8 C -0.16 -1.37 4.31 -27.89 -0.12 -1.50 16 9 C 0.13 1.32 1.09 -89.80 -0.10 1.22 16 10 O -0.55 -7.47 13.40 -54.37 -0.73 -8.20 16 11 C -0.16 -1.56 7.07 -25.83 -0.18 -1.74 16 12 C -0.13 -1.14 8.02 -25.83 -0.21 -1.35 16 13 C -0.13 -1.04 7.48 -25.91 -0.19 -1.24 16 14 C 0.07 0.77 6.44 -2.40 -0.02 0.76 16 15 C 0.08 0.85 3.01 -66.31 -0.20 0.65 16 16 H 0.10 0.96 7.43 -51.93 -0.39 0.57 16 17 N -0.66 -10.23 5.78 -106.52 -0.62 -10.85 16 18 C 0.05 0.83 5.97 -4.98 -0.03 0.80 16 19 C 0.44 10.49 7.82 -10.99 -0.09 10.41 16 20 O -0.58 -16.05 15.78 5.55 0.09 -15.96 16 21 N -0.56 -14.43 5.29 -10.96 -0.06 -14.49 16 22 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 23 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.77 13.05 55.50 0.72 -24.04 16 26 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H 0.05 0.32 8.10 -51.93 -0.42 -0.10 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.47 7.30 -51.93 -0.38 0.09 16 34 H 0.07 0.42 7.84 -51.93 -0.41 0.02 16 35 H 0.10 0.82 7.95 -51.93 -0.41 0.41 16 36 H 0.10 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.39 5.60 6.33 45.56 0.29 5.89 16 38 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.08 0.79 8.14 -51.92 -0.42 0.37 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.53 8.10 -51.93 -0.42 0.11 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.17 7.43 -51.93 -0.39 0.78 16 46 H 0.35 6.16 8.19 -39.29 -0.32 5.84 16 47 H 0.04 0.70 7.80 -51.93 -0.40 0.30 16 48 H 0.09 1.36 8.08 -51.93 -0.42 0.94 16 49 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 403.27 15.07 6.08 6.08 Total: -1.00 -33.70 403.27 -9.45 -43.15 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -7.71 Total: 18.25 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: -1.45 Total: 5.10 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -0.51 Total: -56.33 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -0.83 Total: -32.58 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.70 -9.45 -43.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.662 kcal (2) G-P(sol) polarization free energy of solvation -33.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds