Wall clock time and date at job start Sat Apr 11 2020 05:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 110.30183 * 2 1 4 4 C 1.54385 * 110.43034 * 122.23457 * 2 1 3 5 5 N 1.48144 * 104.61907 * 142.78427 * 4 2 1 6 6 C 1.34775 * 127.83969 * 140.41308 * 5 4 2 7 7 O 1.21282 * 119.99469 * 179.97438 * 6 5 4 8 8 C 1.50692 * 120.00116 * 0.02562 * 6 5 4 9 9 C 1.53001 * 109.47132 * 180.02562 * 8 6 5 10 10 O 1.42896 * 112.84980 * 55.33140 * 9 8 6 11 11 C 1.53777 * 113.61408 * 284.13150 * 9 8 6 12 12 C 1.53947 * 87.02422 * 220.04999 * 11 9 8 13 13 C 1.53784 * 87.11250 * 25.36356 * 12 11 9 14 14 C 1.48151 * 104.32233 * 320.41113 * 5 4 2 15 15 C 1.54277 * 110.34094 * 237.82396 * 2 1 3 16 16 H 1.09000 * 110.34806 * 359.89474 * 15 2 1 17 17 N 1.46901 * 110.43482 * 122.10992 * 15 2 1 18 18 C 1.46897 * 111.00412 * 202.04202 * 17 15 2 19 19 C 1.50696 * 109.47076 * 179.97438 * 18 17 15 20 20 O 1.21287 * 120.00534 * 0.02562 * 19 18 17 21 21 N 1.34781 * 119.99939 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00257 * 180.02562 * 21 19 18 23 23 H 1.08003 * 119.99809 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99874 * 180.02562 * 22 21 19 25 25 N 1.31404 * 120.00571 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99565 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47564 * 359.97438 * 26 24 22 28 28 H 1.48499 * 109.47063 * 119.99792 * 26 24 22 29 29 H 1.48500 * 109.47182 * 239.99826 * 26 24 22 30 30 H 1.09002 * 109.47188 * 182.17739 * 1 2 3 31 31 H 1.09001 * 109.47097 * 302.17447 * 1 2 3 32 32 H 1.09000 * 109.46954 * 62.17382 * 1 2 3 33 33 H 1.09004 * 110.40869 * 261.56755 * 4 2 1 34 34 H 1.09003 * 110.41159 * 23.87778 * 4 2 1 35 35 H 1.09005 * 109.47336 * 299.99781 * 8 6 5 36 36 H 1.09005 * 109.47508 * 59.99878 * 8 6 5 37 37 H 0.96700 * 114.00105 * 309.66562 * 10 9 8 38 38 H 1.09004 * 113.61818 * 334.57275 * 11 9 8 39 39 H 1.09005 * 113.61483 * 105.47012 * 11 9 8 40 40 H 1.09008 * 113.54097 * 270.81327 * 12 11 9 41 41 H 1.08999 * 113.74706 * 139.94219 * 12 11 9 42 42 H 1.08997 * 113.61668 * 220.09527 * 13 12 11 43 43 H 1.09001 * 113.61307 * 89.18149 * 13 12 11 44 44 H 1.08992 * 110.40889 * 280.80306 * 14 5 4 45 45 H 1.09000 * 110.40506 * 158.36626 * 14 5 4 46 46 H 1.00899 * 110.99835 * 78.08231 * 17 15 2 47 47 H 1.08994 * 109.47165 * 299.99762 * 18 17 15 48 48 H 1.09000 * 109.46757 * 59.99630 * 18 17 15 49 49 H 0.97000 * 119.99927 * 359.97438 * 21 19 18 50 50 H 0.96997 * 120.00201 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0222 0.0000 4 6 2.0689 -0.7717 1.2238 5 7 3.2692 -1.4794 0.7206 6 6 4.4461 -1.6626 1.3514 7 8 5.3405 -2.2699 0.8018 8 6 4.6501 -1.1139 2.7400 9 6 6.0611 -1.4573 3.2218 10 8 7.0788 -1.0034 2.3272 11 6 6.2260 -2.9254 3.6486 12 6 7.0894 -2.4064 4.8127 13 6 6.3192 -1.0809 4.6904 14 6 2.8824 -1.9401 -0.6332 15 6 2.0663 -0.7703 -1.2244 16 1 1.2398 -1.1503 -1.8249 17 7 2.9307 0.0959 -2.0371 18 6 3.0246 -0.3993 -3.4168 19 6 3.9168 0.5130 -4.2184 20 8 4.4249 1.4804 -3.6920 21 7 4.1502 0.2541 -5.5203 22 6 4.9623 1.0838 -6.2494 23 1 5.4147 1.9452 -5.7806 24 6 5.2025 0.8170 -7.5918 25 7 4.6516 -0.2307 -8.1623 26 14 6.3084 1.9480 -8.5853 27 1 6.8002 3.0477 -7.7170 28 1 7.4638 1.1758 -9.1089 29 1 5.5402 2.5199 -9.7202 30 1 -0.3634 -1.0269 0.0390 31 1 -0.3633 0.5472 0.8699 32 1 -0.3633 0.4797 -0.9088 33 1 2.3420 -0.0790 2.0198 34 1 1.3263 -1.4854 1.5804 35 1 4.5253 -0.0311 2.7248 36 1 3.9175 -1.5546 3.4162 37 1 6.9339 -1.2572 1.4054 38 1 5.2957 -3.3939 3.9700 39 1 6.7789 -3.5298 2.9294 40 1 8.1476 -2.3209 4.5655 41 1 6.9155 -2.9271 5.7543 42 1 6.9472 -0.1983 4.8110 43 1 5.4144 -1.0441 5.2972 44 1 2.2676 -2.8377 -0.5680 45 1 3.7692 -2.1288 -1.2383 46 1 3.8459 0.1854 -1.6219 47 1 3.4424 -1.4060 -3.4139 48 1 2.0307 -0.4198 -3.8639 49 1 3.7442 -0.5198 -5.9413 50 1 4.8196 -0.4171 -9.0993 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327840813.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:37 Heat of formation + Delta-G solvation = -121.685135 kcal Electronic energy + Delta-G solvation = -30129.505937 eV Core-core repulsion = 25963.152583 eV Total energy + Delta-G solvation = -4166.353354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.65406 -40.54392 -39.95858 -38.75726 -36.20089 -35.58424 -35.39102 -33.57503 -33.26381 -31.71020 -29.73981 -27.80118 -27.21981 -26.66821 -25.98274 -24.41399 -23.27627 -21.39734 -20.86930 -20.57854 -20.42540 -19.91332 -18.35574 -17.84201 -17.44891 -17.21788 -16.80546 -16.72823 -16.38917 -16.15607 -15.98513 -15.79903 -15.62947 -15.26690 -14.93802 -14.73319 -14.26008 -14.03917 -13.84221 -13.67199 -13.57710 -13.49684 -13.31727 -13.14773 -13.04074 -12.90665 -12.79927 -12.56246 -12.44428 -12.17965 -12.14723 -12.00452 -11.86352 -11.79009 -11.66035 -11.54676 -11.42820 -10.78136 -10.64348 -10.39793 -10.05436 -9.99118 -9.27315 -8.49855 -5.98665 1.34094 1.39336 1.49058 1.53758 1.86272 2.01370 2.26644 2.85904 3.10855 3.17061 3.29382 3.45888 3.56524 3.60485 3.68788 3.73472 3.90111 4.10101 4.12332 4.17234 4.28541 4.36261 4.37086 4.42985 4.46120 4.53077 4.56837 4.65365 4.67884 4.71889 4.76649 4.80727 4.83666 4.93698 5.03170 5.11864 5.14028 5.18715 5.28560 5.36490 5.38359 5.42685 5.49767 5.88810 6.09292 6.24279 6.44668 6.56647 6.66861 7.06002 7.09455 7.52318 8.07881 8.67817 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012101 B = 0.002488 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2313.310209 B =11251.842029 C =12863.808489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.094 4.094 3 H 0.075 0.925 4 C 0.103 3.897 5 N -0.620 5.620 6 C 0.526 3.474 7 O -0.587 6.587 8 C -0.147 4.147 9 C 0.106 3.894 10 O -0.571 6.571 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.117 4.117 14 C 0.071 3.929 15 C 0.077 3.923 16 H 0.113 0.887 17 N -0.667 5.667 18 C 0.064 3.936 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.993 3.007 27 H -0.275 1.275 28 H -0.271 1.271 29 H -0.268 1.268 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.140 0.860 37 H 0.383 0.617 38 H 0.103 0.897 39 H 0.046 0.954 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.050 0.950 46 H 0.336 0.664 47 H 0.060 0.940 48 H 0.113 0.887 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.696 -7.091 26.375 29.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.114 4.114 3 H 0.093 0.907 4 C -0.018 4.018 5 N -0.352 5.352 6 C 0.318 3.682 7 O -0.469 6.469 8 C -0.187 4.187 9 C 0.065 3.935 10 O -0.382 6.382 11 C -0.199 4.199 12 C -0.172 4.172 13 C -0.154 4.154 14 C -0.053 4.053 15 C -0.034 4.034 16 H 0.131 0.869 17 N -0.297 5.297 18 C -0.068 4.068 19 C 0.223 3.777 20 O -0.512 6.512 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.193 1.193 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.158 0.842 37 H 0.236 0.764 38 H 0.122 0.878 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.146 0.854 44 H 0.115 0.885 45 H 0.069 0.931 46 H 0.155 0.845 47 H 0.078 0.922 48 H 0.131 0.869 49 H 0.231 0.769 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.053 -6.153 26.674 29.162 hybrid contribution 1.147 -0.919 -1.922 2.419 sum -8.906 -7.072 24.752 27.240 Atomic orbital electron populations 1.21743 0.91653 1.03025 1.02681 1.22131 0.97646 0.99529 0.92132 0.90673 1.22850 0.85783 0.96209 0.96999 1.49080 1.13628 1.55228 1.17255 1.20958 0.80058 0.78647 0.88568 1.90599 1.42612 1.44622 1.69108 1.22347 0.99519 1.04262 0.92552 1.22237 0.85404 0.95001 0.90876 1.86321 1.49184 1.79725 1.22984 1.23622 1.01366 0.96458 0.98501 1.22761 0.98516 0.97048 0.98861 1.23130 1.02280 0.98258 0.91751 1.23174 0.99025 0.99006 0.84120 1.22879 0.95460 0.90335 0.94706 0.86889 1.60288 1.18271 1.50460 1.00722 1.21595 1.00129 0.95139 0.89977 1.20918 0.85702 0.88164 0.82900 1.90492 1.56204 1.33114 1.71354 1.41935 1.43770 1.26465 1.08815 1.19679 1.25502 1.08206 0.92946 0.90543 1.26046 0.99235 0.98606 0.97389 1.69668 1.44724 1.27780 1.13859 0.84875 0.77852 0.77837 0.77794 1.19938 1.19600 1.19282 0.90897 0.90718 0.92949 0.88135 0.87750 0.86914 0.84179 0.76420 0.87823 0.93484 0.91725 0.89091 0.91259 0.85425 0.88498 0.93109 0.84520 0.92250 0.86942 0.76934 0.91230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.38 8.93 71.98 0.64 -0.74 16 2 C -0.09 -1.44 3.45 -9.89 -0.03 -1.47 16 3 H 0.07 1.52 7.95 -2.39 -0.02 1.50 16 4 C 0.10 1.14 6.46 86.53 0.56 1.70 16 5 N -0.62 -11.78 3.32 -807.95 -2.68 -14.46 16 6 C 0.53 12.07 7.65 87.65 0.67 12.74 16 7 O -0.59 -18.71 13.90 15.26 0.21 -18.50 16 8 C -0.15 -2.24 4.31 29.85 0.13 -2.11 16 9 C 0.11 2.12 1.09 -10.27 -0.01 2.11 16 10 O -0.57 -16.55 13.40 -130.68 -1.75 -18.30 16 11 C -0.16 -3.01 7.07 31.18 0.22 -2.79 16 12 C -0.13 -2.12 8.02 31.18 0.25 -1.87 16 13 C -0.12 -1.66 7.48 31.12 0.23 -1.43 16 14 C 0.07 1.50 6.44 86.54 0.56 2.05 16 15 C 0.08 1.58 3.01 45.82 0.14 1.71 16 16 H 0.11 1.95 7.43 -2.39 -0.02 1.93 16 17 N -0.67 -20.90 5.78 -490.91 -2.84 -23.74 16 18 C 0.06 2.21 5.97 85.56 0.51 2.72 16 19 C 0.44 21.41 7.82 87.65 0.69 22.10 16 20 O -0.63 -35.99 15.78 -3.05 -0.05 -36.03 16 21 N -0.57 -30.23 5.29 -306.99 -1.62 -31.86 16 22 C -0.33 -19.51 9.68 84.04 0.81 -18.70 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.46 13.05 21.66 0.28 -50.18 16 26 Si 0.99 44.02 29.55 68.60 2.03 46.04 16 27 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 30 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.10 0.75 7.30 -2.39 -0.02 0.73 16 34 H 0.10 0.62 7.84 -2.39 -0.02 0.61 16 35 H 0.11 1.51 7.95 -2.38 -0.02 1.49 16 36 H 0.14 1.05 8.09 -2.38 -0.02 1.03 16 37 H 0.38 12.08 6.33 -74.06 -0.47 11.61 16 38 H 0.10 1.43 8.06 -2.39 -0.02 1.41 16 39 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 40 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.13 0.90 8.10 -2.39 -0.02 0.89 16 44 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.05 1.43 7.43 -2.39 -0.02 1.41 16 46 H 0.34 12.28 8.19 -89.69 -0.73 11.54 16 47 H 0.06 1.89 7.80 -2.39 -0.02 1.87 16 48 H 0.11 3.35 8.08 -2.39 -0.02 3.33 16 49 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 50 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -78.34 403.27 -1.55 -79.90 By element: Atomic # 1 Polarization: 52.31 SS G_CDS: -0.97 Total: 51.34 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 5.83 Total: 15.79 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.86 Total: -120.23 kcal Atomic # 8 Polarization: -71.25 SS G_CDS: -1.59 Total: -72.84 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.04 kcal Total: -78.34 -1.55 -79.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327840813.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.789 kcal (2) G-P(sol) polarization free energy of solvation -78.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds