Wall clock time and date at job start Sat Apr 11 2020 05:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.52357 * 2 1 4 4 C 1.53039 * 109.49893 * 239.91365 * 2 1 3 5 5 C 1.53036 * 109.53662 * 178.68287 * 4 2 1 6 6 H 1.08999 * 109.50159 * 301.42080 * 5 4 2 7 7 O 1.42896 * 109.52416 * 181.33258 * 5 4 2 8 8 C 1.53198 * 109.31263 * 61.36931 * 5 4 2 9 9 N 1.46927 * 108.77343 * 305.36165 * 8 5 4 10 10 C 1.34774 * 120.63375 * 233.58348 * 9 8 5 11 11 O 1.21348 * 119.99871 * 184.50980 * 10 9 8 12 12 C 1.49451 * 119.99588 * 4.51200 * 10 9 8 13 13 O 1.21351 * 119.99883 * 86.13663 * 12 10 9 14 14 N 1.34776 * 119.99713 * 266.13180 * 12 10 9 15 15 C 1.47079 * 120.88191 * 355.01669 * 14 12 10 16 16 C 1.53243 * 108.51914 * 128.79240 * 15 14 12 17 17 N 1.46900 * 109.36127 * 53.81908 * 16 15 14 18 18 C 1.46898 * 110.99881 * 172.76184 * 17 16 15 19 19 C 1.50696 * 109.47490 * 71.40430 * 18 17 16 20 20 H 1.07994 * 119.99857 * 4.31052 * 19 18 17 21 21 C 1.37878 * 120.00106 * 184.30572 * 19 18 17 22 22 N 1.31515 * 119.99931 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99906 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47121 * 90.00207 * 23 21 19 25 25 H 1.48502 * 109.46919 * 210.00010 * 23 21 19 26 26 H 1.48501 * 109.47125 * 330.00206 * 23 21 19 27 27 C 1.46898 * 111.26730 * 296.93375 * 17 16 15 28 28 C 1.47078 * 120.88112 * 174.99323 * 14 12 10 29 29 C 1.46931 * 118.73757 * 53.86026 * 9 8 5 30 30 H 1.09003 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47268 * 300.08661 * 1 2 3 32 32 H 1.09006 * 109.46858 * 60.08736 * 1 2 3 33 33 H 1.09001 * 109.45641 * 58.66353 * 4 2 1 34 34 H 1.09000 * 109.46200 * 298.70682 * 4 2 1 35 35 H 0.96707 * 114.00115 * 180.14841 * 7 5 4 36 36 H 1.08993 * 109.59051 * 185.57902 * 8 5 4 37 37 H 1.09001 * 109.58989 * 65.14870 * 8 5 4 38 38 H 1.09000 * 109.63049 * 9.08225 * 15 14 12 39 39 H 1.09003 * 109.78715 * 248.59559 * 15 14 12 40 40 H 1.08997 * 109.49012 * 173.78697 * 16 15 14 41 41 H 1.08997 * 109.49723 * 293.84200 * 16 15 14 42 42 H 1.09000 * 109.47150 * 191.40958 * 18 17 16 43 43 H 1.09003 * 109.47078 * 311.40074 * 18 17 16 44 44 H 0.96997 * 119.99719 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47632 * 303.10597 * 27 17 16 46 46 H 1.09003 * 109.51561 * 183.05008 * 27 17 16 47 47 H 1.09007 * 109.62844 * 350.91815 * 28 14 12 48 48 H 1.09001 * 109.62911 * 111.29706 * 28 14 12 49 49 H 1.09006 * 109.58455 * 65.92488 * 29 9 8 50 50 H 1.08993 * 109.58642 * 186.35152 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7232 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 1 3.9160 0.3388 -1.2539 7 8 4.0469 -1.3432 -2.4471 8 6 4.1053 -1.4267 -0.0305 9 7 3.5046 -0.8291 1.1697 10 6 4.2810 -0.3863 2.1785 11 8 3.7718 0.0299 3.1983 12 6 5.7690 -0.4080 2.0410 13 8 6.3432 0.5222 1.5141 14 7 6.4731 -1.4606 2.5022 15 6 5.8108 -2.5468 3.2401 16 6 6.2074 -3.8819 2.6009 17 7 7.6720 -3.9761 2.5389 18 6 8.0953 -5.3097 2.0914 19 6 7.7792 -5.4720 0.6269 20 1 7.3751 -4.6420 0.0665 21 6 8.0060 -6.6802 0.0024 22 7 7.7306 -6.8216 -1.2758 23 14 8.7058 -8.1156 0.9715 24 1 7.5936 -8.9083 1.5546 25 1 9.5081 -8.9787 0.0679 26 1 9.5719 -7.6010 2.0625 27 6 8.2375 -2.9278 1.6792 28 6 7.9241 -1.5537 2.2806 29 6 2.0410 -0.7288 1.2521 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6582 -0.2246 -2.1388 34 1 1.6968 -1.7574 -1.2352 35 1 5.0108 -1.3643 -2.5229 36 1 5.1895 -1.3246 0.0141 37 1 3.8376 -2.4819 -0.0864 38 1 4.7295 -2.4211 3.1845 39 1 6.1280 -2.5316 4.2829 40 1 5.8152 -4.7031 3.2008 41 1 5.7962 -3.9391 1.5931 42 1 9.1685 -5.4213 2.2460 43 1 7.5648 -6.0705 2.6641 44 1 7.8899 -7.6717 -1.7150 45 1 7.7985 -2.9979 0.6840 46 1 9.3176 -3.0568 1.6101 47 1 8.2401 -0.7713 1.5905 48 1 8.4477 -1.4380 3.2296 49 1 1.6084 -1.7283 1.2986 50 1 1.7629 -0.1662 2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329436321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:42 Heat of formation + Delta-G solvation = -103.508071 kcal Electronic energy + Delta-G solvation = -31906.640509 eV Core-core repulsion = 27741.075371 eV Total energy + Delta-G solvation = -4165.565138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.16624 -39.50607 -38.27919 -37.60480 -36.11418 -34.71454 -34.17930 -32.40101 -31.00608 -30.53160 -29.00577 -27.56401 -26.53294 -25.63555 -23.89733 -23.04774 -22.34558 -21.82084 -20.61779 -19.85525 -18.82209 -17.80346 -17.35070 -17.05695 -16.93228 -16.58736 -15.53689 -15.32314 -15.06455 -14.96825 -14.73702 -14.65822 -14.46615 -14.22089 -14.05825 -13.65860 -13.38040 -13.20884 -13.09650 -12.61724 -12.56953 -12.35764 -12.32273 -12.24071 -12.12279 -11.63549 -11.44444 -11.36074 -11.22752 -11.16269 -11.03908 -10.86687 -10.78328 -10.56404 -10.40353 -10.38922 -10.17009 -9.63568 -9.53396 -8.97731 -8.74554 -8.70934 -7.44192 -6.22608 -4.24257 1.99138 2.04403 2.52204 3.15042 3.18710 3.27893 3.30418 3.84057 4.11189 4.28662 4.42998 4.44851 4.55859 4.62646 4.71521 4.86849 5.05656 5.09351 5.09687 5.18040 5.24647 5.27755 5.34050 5.38424 5.45183 5.52286 5.55436 5.58761 5.68808 5.71089 5.75386 5.79673 5.84899 5.88034 6.00688 6.09186 6.17481 6.38988 6.44079 6.54654 6.73285 6.86193 6.94623 7.16029 7.38696 7.46844 7.62173 7.78779 7.80958 7.84243 8.29728 8.77363 9.39579 10.89674 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003744 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.837626 B = 7476.138472 C = 8646.854319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.078 0.922 4 C -0.110 4.110 5 C 0.095 3.905 6 H 0.061 0.939 7 O -0.559 6.559 8 C 0.074 3.926 9 N -0.592 5.592 10 C 0.522 3.478 11 O -0.516 6.516 12 C 0.515 3.485 13 O -0.522 6.522 14 N -0.587 5.587 15 C 0.109 3.891 16 C 0.048 3.952 17 N -0.533 5.533 18 C 0.156 3.844 19 C -0.558 4.558 20 H 0.075 0.925 21 C 0.075 3.925 22 N -0.895 5.895 23 Si 0.878 3.122 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.264 1.264 27 C 0.050 3.950 28 C 0.113 3.887 29 C 0.112 3.888 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.386 0.614 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.048 0.952 42 H 0.032 0.968 43 H 0.026 0.974 44 H 0.265 0.735 45 H 0.053 0.947 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.600 11.176 3.495 15.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 H 0.097 0.903 4 C -0.147 4.147 5 C 0.035 3.965 6 H 0.079 0.921 7 O -0.364 6.364 8 C -0.049 4.049 9 N -0.327 5.327 10 C 0.305 3.695 11 O -0.391 6.391 12 C 0.297 3.703 13 O -0.398 6.398 14 N -0.322 5.322 15 C -0.014 4.014 16 C -0.081 4.081 17 N -0.257 5.257 18 C 0.029 3.971 19 C -0.596 4.596 20 H 0.093 0.907 21 C -0.128 4.128 22 N -0.532 5.532 23 Si 0.705 3.295 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.188 1.188 27 C -0.079 4.079 28 C -0.009 4.009 29 C -0.010 4.010 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.094 0.906 49 H 0.096 0.904 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.994 11.760 3.982 16.584 hybrid contribution 0.722 -1.086 -0.409 1.367 sum -10.272 10.674 3.573 15.239 Atomic orbital electron populations 1.21734 0.93494 1.02489 1.02349 1.21559 0.96596 1.00165 0.94029 0.90343 1.21578 0.92904 1.02149 0.98075 1.22049 0.95282 0.95301 0.83877 0.92082 1.86518 1.27683 1.81062 1.41128 1.22644 0.98965 0.98958 0.84362 1.48004 1.07105 1.59573 1.18058 1.20351 0.87903 0.77744 0.83546 1.90783 1.74081 1.46130 1.28076 1.20111 0.87734 0.83239 0.79249 1.90787 1.70056 1.34793 1.44162 1.48245 1.09708 1.20227 1.53982 1.22052 0.96411 0.86369 0.96530 1.22278 0.90660 0.94911 1.00298 1.62407 1.07366 1.05366 1.50575 1.20194 0.96367 0.85455 0.95054 1.21647 1.44658 0.99268 0.94038 0.90657 1.24956 0.94505 0.98642 0.94712 1.69913 1.47772 1.25573 1.09960 0.86815 0.79748 0.82628 0.80326 1.20204 1.21240 1.18811 1.22299 1.00831 0.89004 0.95753 1.22019 0.78051 0.98878 1.01926 1.21957 0.77998 1.01679 0.99357 0.92083 0.92062 0.92006 0.90569 0.90548 0.76589 0.89567 0.89074 0.90623 0.90044 0.90037 0.93381 0.95019 0.95622 0.92547 0.92920 0.89715 0.89079 0.90643 0.90354 0.88377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 9.20 37.16 0.34 -0.59 16 2 C -0.10 -0.89 2.89 -90.27 -0.26 -1.15 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.11 -1.04 4.82 -26.69 -0.13 -1.17 16 5 C 0.09 1.05 3.62 -26.61 -0.10 0.96 16 6 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 7 O -0.56 -6.77 13.32 -35.23 -0.47 -7.24 16 8 C 0.07 0.90 5.98 -3.71 -0.02 0.87 16 9 N -0.59 -7.32 2.97 -173.00 -0.51 -7.83 16 10 C 0.52 7.86 5.51 -11.59 -0.06 7.80 16 11 O -0.52 -8.76 16.53 5.50 0.09 -8.67 16 12 C 0.51 8.29 5.48 -11.59 -0.06 8.23 16 13 O -0.52 -9.53 16.58 5.50 0.09 -9.44 16 14 N -0.59 -8.88 3.01 -172.97 -0.52 -9.40 16 15 C 0.11 1.54 6.53 -3.60 -0.02 1.51 16 16 C 0.05 0.79 5.34 -3.70 -0.02 0.77 16 17 N -0.53 -9.77 4.83 -235.77 -1.14 -10.91 16 18 C 0.16 3.38 4.24 -4.98 -0.02 3.36 16 19 C -0.56 -14.19 8.41 -34.44 -0.29 -14.48 16 20 H 0.08 2.07 6.12 -52.49 -0.32 1.75 16 21 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.89 -25.71 13.96 55.43 0.77 -24.94 16 23 Si 0.88 20.18 27.38 -169.99 -4.66 15.52 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.26 -5.82 6.67 56.52 0.38 -5.45 16 27 C 0.05 0.86 5.03 -3.70 -0.02 0.84 16 28 C 0.11 1.68 6.58 -3.61 -0.02 1.65 16 29 C 0.11 1.11 5.73 -3.48 -0.02 1.09 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.39 3.67 9.08 45.56 0.41 4.09 16 36 H 0.09 1.16 6.31 -51.93 -0.33 0.83 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.08 1.01 6.37 -51.93 -0.33 0.67 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.28 7.97 -51.93 -0.41 0.87 16 41 H 0.05 0.89 7.53 -51.93 -0.39 0.49 16 42 H 0.03 0.71 7.50 -51.93 -0.39 0.32 16 43 H 0.03 0.56 7.13 -51.93 -0.37 0.19 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.05 1.03 6.32 -51.93 -0.33 0.70 16 46 H 0.08 1.44 8.11 -51.93 -0.42 1.02 16 47 H 0.09 1.34 7.10 -51.93 -0.37 0.97 16 48 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.10 1.03 7.03 -51.93 -0.37 0.67 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -31.59 388.72 -8.71 -40.31 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.42 Total: 5.13 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: -0.81 Total: 11.61 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -1.40 Total: -53.08 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.29 Total: -25.35 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.66 Total: 15.52 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.59 -8.71 -40.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329436321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.202 kcal (2) G-P(sol) polarization free energy of solvation -31.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds