Wall clock time and date at job start Sat Apr 11 2020 05:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.52357 * 2 1 4 4 C 1.53039 * 109.49893 * 239.91365 * 2 1 3 5 5 C 1.53036 * 109.53662 * 178.68287 * 4 2 1 6 6 H 1.08999 * 109.50159 * 301.42080 * 5 4 2 7 7 O 1.42896 * 109.52416 * 181.33258 * 5 4 2 8 8 C 1.53198 * 109.31263 * 61.36931 * 5 4 2 9 9 N 1.46927 * 108.77343 * 305.36165 * 8 5 4 10 10 C 1.34774 * 120.63375 * 233.58348 * 9 8 5 11 11 O 1.21348 * 119.99871 * 184.50980 * 10 9 8 12 12 C 1.49451 * 119.99588 * 4.51200 * 10 9 8 13 13 O 1.21351 * 119.99883 * 86.13663 * 12 10 9 14 14 N 1.34776 * 119.99713 * 266.13180 * 12 10 9 15 15 C 1.47079 * 120.88191 * 355.01669 * 14 12 10 16 16 C 1.53243 * 108.51914 * 128.79240 * 15 14 12 17 17 N 1.46900 * 109.36127 * 53.81908 * 16 15 14 18 18 C 1.46898 * 110.99881 * 172.76184 * 17 16 15 19 19 C 1.50696 * 109.47490 * 71.40430 * 18 17 16 20 20 H 1.07994 * 119.99857 * 4.31052 * 19 18 17 21 21 C 1.37878 * 120.00106 * 184.30572 * 19 18 17 22 22 N 1.31515 * 119.99931 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 119.99906 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47121 * 90.00207 * 23 21 19 25 25 H 1.48502 * 109.46919 * 210.00010 * 23 21 19 26 26 H 1.48501 * 109.47125 * 330.00206 * 23 21 19 27 27 C 1.46898 * 111.26730 * 296.93375 * 17 16 15 28 28 C 1.47078 * 120.88112 * 174.99323 * 14 12 10 29 29 C 1.46931 * 118.73757 * 53.86026 * 9 8 5 30 30 H 1.09003 * 109.46918 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47268 * 300.08661 * 1 2 3 32 32 H 1.09006 * 109.46858 * 60.08736 * 1 2 3 33 33 H 1.09001 * 109.45641 * 58.66353 * 4 2 1 34 34 H 1.09000 * 109.46200 * 298.70682 * 4 2 1 35 35 H 0.96707 * 114.00115 * 180.14841 * 7 5 4 36 36 H 1.08993 * 109.59051 * 185.57902 * 8 5 4 37 37 H 1.09001 * 109.58989 * 65.14870 * 8 5 4 38 38 H 1.09000 * 109.63049 * 9.08225 * 15 14 12 39 39 H 1.09003 * 109.78715 * 248.59559 * 15 14 12 40 40 H 1.08997 * 109.49012 * 173.78697 * 16 15 14 41 41 H 1.08997 * 109.49723 * 293.84200 * 16 15 14 42 42 H 1.09000 * 109.47150 * 191.40958 * 18 17 16 43 43 H 1.09003 * 109.47078 * 311.40074 * 18 17 16 44 44 H 0.96997 * 119.99719 * 180.02562 * 22 21 19 45 45 H 1.08997 * 109.47632 * 303.10597 * 27 17 16 46 46 H 1.09003 * 109.51561 * 183.05008 * 27 17 16 47 47 H 1.09007 * 109.62844 * 350.91815 * 28 14 12 48 48 H 1.09001 * 109.62911 * 111.29706 * 28 14 12 49 49 H 1.09006 * 109.58455 * 65.92488 * 29 9 8 50 50 H 1.08993 * 109.58642 * 186.35152 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7232 -1.2483 5 6 3.5709 -0.6951 -1.2659 6 1 3.9160 0.3388 -1.2539 7 8 4.0469 -1.3432 -2.4471 8 6 4.1053 -1.4267 -0.0305 9 7 3.5046 -0.8291 1.1697 10 6 4.2810 -0.3863 2.1785 11 8 3.7718 0.0299 3.1983 12 6 5.7690 -0.4080 2.0410 13 8 6.3432 0.5222 1.5141 14 7 6.4731 -1.4606 2.5022 15 6 5.8108 -2.5468 3.2401 16 6 6.2074 -3.8819 2.6009 17 7 7.6720 -3.9761 2.5389 18 6 8.0953 -5.3097 2.0914 19 6 7.7792 -5.4720 0.6269 20 1 7.3751 -4.6420 0.0665 21 6 8.0060 -6.6802 0.0024 22 7 7.7306 -6.8216 -1.2758 23 14 8.7058 -8.1156 0.9715 24 1 7.5936 -8.9083 1.5546 25 1 9.5081 -8.9787 0.0679 26 1 9.5719 -7.6010 2.0625 27 6 8.2375 -2.9278 1.6792 28 6 7.9241 -1.5537 2.2806 29 6 2.0410 -0.7288 1.2521 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5151 0.8892 32 1 -0.3633 0.5125 -0.8908 33 1 1.6582 -0.2246 -2.1388 34 1 1.6968 -1.7574 -1.2352 35 1 5.0108 -1.3643 -2.5229 36 1 5.1895 -1.3246 0.0141 37 1 3.8376 -2.4819 -0.0864 38 1 4.7295 -2.4211 3.1845 39 1 6.1280 -2.5316 4.2829 40 1 5.8152 -4.7031 3.2008 41 1 5.7962 -3.9391 1.5931 42 1 9.1685 -5.4213 2.2460 43 1 7.5648 -6.0705 2.6641 44 1 7.8899 -7.6717 -1.7150 45 1 7.7985 -2.9979 0.6840 46 1 9.3176 -3.0568 1.6101 47 1 8.2401 -0.7713 1.5905 48 1 8.4477 -1.4380 3.2296 49 1 1.6084 -1.7283 1.2986 50 1 1.7629 -0.1662 2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329436321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:41 Heat of formation + Delta-G solvation = -128.405451 kcal Electronic energy + Delta-G solvation = -31907.720140 eV Core-core repulsion = 27741.075371 eV Total energy + Delta-G solvation = -4166.644769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.34980 -40.65202 -39.45388 -38.95597 -37.06552 -36.21547 -35.09386 -34.34169 -32.31766 -31.44654 -30.60764 -28.55907 -27.62798 -27.03037 -25.15725 -24.40344 -23.36054 -23.21284 -21.75274 -21.01026 -20.03989 -19.14578 -18.71247 -18.37896 -18.20960 -17.77988 -16.62994 -16.40829 -16.36672 -16.25488 -16.08950 -15.91405 -15.82805 -15.55440 -15.27620 -14.95287 -14.45967 -14.35406 -14.23608 -14.02113 -13.94355 -13.84665 -13.18376 -13.11258 -13.02177 -12.94927 -12.90991 -12.76164 -12.57728 -12.29420 -12.14290 -11.99784 -11.98870 -11.88254 -11.83526 -11.69200 -11.58656 -11.34305 -10.80703 -10.76071 -10.04638 -9.99768 -9.05488 -8.28817 -6.34262 0.79518 0.82914 1.31385 1.37930 1.41174 1.51180 2.00040 2.35824 2.78816 3.07229 3.13578 3.17613 3.48462 3.60259 3.72666 3.79187 3.88920 3.96498 4.04349 4.10187 4.16774 4.26999 4.39797 4.44047 4.46583 4.49074 4.57784 4.60653 4.64036 4.74241 4.79927 4.86069 4.93497 5.00453 5.02245 5.03794 5.07461 5.12318 5.16037 5.20965 5.23988 5.41380 5.48544 5.76622 5.87505 6.08753 6.26157 6.33719 6.45084 6.52221 6.61483 6.72559 7.33290 8.86395 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011948 B = 0.003744 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.837626 B = 7476.138472 C = 8646.854319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.096 4.096 3 H 0.072 0.928 4 C -0.106 4.106 5 C 0.097 3.903 6 H 0.059 0.941 7 O -0.572 6.572 8 C 0.079 3.921 9 N -0.582 5.582 10 C 0.522 3.478 11 O -0.537 6.537 12 C 0.513 3.487 13 O -0.548 6.548 14 N -0.587 5.587 15 C 0.118 3.882 16 C 0.051 3.949 17 N -0.526 5.526 18 C 0.162 3.838 19 C -0.550 4.550 20 H 0.041 0.959 21 C 0.016 3.984 22 N -0.944 5.944 23 Si 0.943 3.057 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.244 1.244 27 C 0.056 3.944 28 C 0.122 3.878 29 C 0.107 3.893 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.394 0.606 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.021 0.979 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.264 0.736 45 H 0.020 0.980 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 10.993 5.323 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.144 4.144 5 C 0.037 3.963 6 H 0.077 0.923 7 O -0.379 6.379 8 C -0.044 4.044 9 N -0.317 5.317 10 C 0.305 3.695 11 O -0.413 6.413 12 C 0.296 3.704 13 O -0.426 6.426 14 N -0.321 5.321 15 C -0.004 4.004 16 C -0.079 4.079 17 N -0.249 5.249 18 C 0.034 3.966 19 C -0.589 4.589 20 H 0.059 0.941 21 C -0.182 4.182 22 N -0.584 5.584 23 Si 0.767 3.233 24 H -0.193 1.193 25 H -0.217 1.217 26 H -0.167 1.167 27 C -0.073 4.073 28 C 0.000 4.000 29 C -0.014 4.014 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.243 0.757 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.039 0.961 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.115 0.885 49 H 0.113 0.887 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.767 11.580 5.819 17.505 hybrid contribution 0.939 -0.981 -1.055 1.720 sum -10.828 10.598 4.764 15.883 Atomic orbital electron populations 1.21712 0.91512 1.03212 1.03146 1.21509 0.98070 0.99320 0.92601 0.90917 1.21600 0.91398 1.02439 0.98954 1.22098 0.96509 0.94744 0.82942 0.92321 1.86496 1.28642 1.81227 1.41537 1.22582 0.98013 0.98904 0.84904 1.48066 1.08121 1.58261 1.17221 1.20147 0.87464 0.78031 0.83879 1.90772 1.74199 1.47482 1.28887 1.20355 0.88356 0.83028 0.78677 1.90765 1.70704 1.35839 1.45299 1.48328 1.09866 1.20267 1.53624 1.22050 0.96987 0.84431 0.96931 1.22307 0.89286 0.96953 0.99313 1.62421 1.08579 1.04027 1.49915 1.20065 0.96541 0.87538 0.92426 1.21896 1.43093 0.98004 0.95890 0.94113 1.25832 0.95159 1.01724 0.95528 1.70066 1.50018 1.26351 1.11977 0.85776 0.79353 0.79009 0.79182 1.19343 1.21666 1.16745 1.22236 1.00666 0.90149 0.94226 1.21939 0.78213 0.97060 1.02765 1.22228 0.76194 1.02876 1.00097 0.91403 0.91322 0.91198 0.89820 0.90523 0.75674 0.91308 0.89410 0.89602 0.88049 0.88752 0.96071 0.94855 0.94781 0.92670 0.96131 0.89472 0.89047 0.88524 0.88732 0.88564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.20 71.98 0.66 -0.83 16 2 C -0.10 -1.48 2.89 -10.57 -0.03 -1.51 16 3 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.11 -1.90 4.82 30.62 0.15 -1.75 16 5 C 0.10 2.15 3.62 30.67 0.11 2.26 16 6 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 7 O -0.57 -14.08 13.32 -148.98 -1.99 -16.07 16 8 C 0.08 1.95 5.98 86.36 0.52 2.47 16 9 N -0.58 -14.13 2.97 -819.63 -2.43 -16.56 16 10 C 0.52 15.48 5.51 87.27 0.48 15.96 16 11 O -0.54 -17.73 16.53 -3.24 -0.05 -17.79 16 12 C 0.51 16.42 5.48 87.27 0.48 16.90 16 13 O -0.55 -20.13 16.58 -3.25 -0.05 -20.19 16 14 N -0.59 -17.32 3.01 -819.51 -2.47 -19.78 16 15 C 0.12 3.13 6.53 86.35 0.56 3.70 16 16 C 0.05 1.61 5.34 86.38 0.46 2.07 16 17 N -0.53 -18.70 4.83 -899.84 -4.35 -23.04 16 18 C 0.16 6.82 4.24 85.56 0.36 7.19 16 19 C -0.55 -28.40 8.41 25.60 0.22 -28.18 16 20 H 0.04 2.35 6.12 -2.91 -0.02 2.33 16 21 C 0.02 0.87 5.47 84.65 0.46 1.33 16 22 N -0.94 -55.70 13.96 21.45 0.30 -55.40 16 23 Si 0.94 41.07 27.38 68.60 1.88 42.94 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 26 H -0.24 -9.79 6.67 99.48 0.66 -9.12 16 27 C 0.06 1.93 5.03 86.38 0.43 2.37 16 28 C 0.12 3.51 6.58 86.35 0.57 4.08 16 29 C 0.11 1.97 5.73 86.51 0.50 2.47 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.39 7.92 9.08 -74.05 -0.67 7.25 16 36 H 0.07 1.94 6.31 -2.39 -0.02 1.92 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 2.14 6.37 -2.39 -0.02 2.13 16 39 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.09 2.78 7.97 -2.39 -0.02 2.76 16 41 H 0.02 0.79 7.53 -2.39 -0.02 0.77 16 42 H 0.03 1.42 7.50 -2.39 -0.02 1.40 16 43 H 0.03 1.40 7.13 -2.39 -0.02 1.38 16 44 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 45 H 0.02 0.84 6.32 -2.39 -0.02 0.82 16 46 H 0.09 2.93 8.11 -2.39 -0.02 2.91 16 47 H 0.09 2.67 7.10 -2.38 -0.02 2.65 16 48 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 49 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 50 H 0.10 1.89 7.03 -2.39 -0.02 1.87 16 Total: -1.00 -68.29 388.72 -3.00 -71.28 By element: Atomic # 1 Polarization: 25.85 SS G_CDS: 0.23 Total: 26.08 kcal Atomic # 6 Polarization: 22.59 SS G_CDS: 5.93 Total: 28.52 kcal Atomic # 7 Polarization: -105.84 SS G_CDS: -8.94 Total: -114.78 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -2.09 Total: -54.04 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.88 Total: 42.94 kcal Total: -68.29 -3.00 -71.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329436321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.124 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds