Wall clock time and date at job start Sat Apr 11 2020 05:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20753 * 120.00275 * 2 1 4 4 C 1.50707 * 119.99939 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47090 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47130 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.47195 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00060 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.65157 * 0.02562 * 9 7 6 11 11 C 1.54912 * 104.83229 * 155.83810 * 10 9 7 12 12 C 1.55156 * 101.57907 * 37.01106 * 11 10 9 13 13 H 1.08993 * 110.72028 * 83.04206 * 12 11 10 14 14 N 1.46903 * 110.71850 * 206.13371 * 12 11 10 15 15 C 1.46896 * 110.99955 * 271.16036 * 14 12 11 16 16 C 1.50700 * 109.46942 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99793 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99770 * 23 21 19 27 27 C 1.47317 * 125.61293 * 180.16581 * 9 7 6 28 28 H 1.09004 * 110.06810 * 61.74954 * 27 9 7 29 29 C 1.52997 * 109.85142 * 300.49033 * 27 9 7 30 30 H 1.08993 * 109.47395 * 239.99477 * 1 2 3 31 31 H 1.09000 * 109.46942 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.46804 * 120.00037 * 1 2 3 33 33 H 1.08997 * 109.46956 * 59.99728 * 4 2 1 34 34 H 1.09008 * 109.46530 * 299.99916 * 4 2 1 35 35 H 1.09000 * 109.47327 * 59.99605 * 5 4 2 36 36 H 1.09005 * 109.46988 * 299.99957 * 5 4 2 37 37 H 1.09000 * 109.47263 * 59.99657 * 6 5 4 38 38 H 1.08996 * 109.47104 * 299.99886 * 6 5 4 39 39 H 1.09000 * 110.36474 * 36.99686 * 10 9 7 40 40 H 1.08997 * 110.46152 * 274.72550 * 10 9 7 41 41 H 1.09003 * 111.00074 * 278.94093 * 11 10 9 42 42 H 1.09000 * 111.00393 * 155.08555 * 11 10 9 43 43 H 1.00907 * 111.00029 * 35.11549 * 14 12 11 44 44 H 1.08994 * 109.47346 * 60.00149 * 15 14 12 45 45 H 1.08998 * 109.47279 * 299.99821 * 15 14 12 46 46 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 47 47 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.47014 * 302.39512 * 29 27 9 49 49 H 1.08993 * 109.47233 * 62.39159 * 29 27 9 50 50 H 1.08997 * 109.47598 * 182.39595 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0256 0.0002 6 6 4.5297 -2.3506 0.0002 7 6 6.0114 -2.0753 0.0004 8 8 6.4157 -0.9319 -0.0001 9 7 6.8871 -3.0997 -0.0001 10 6 6.5349 -4.5313 -0.0013 11 6 7.7671 -5.2423 -0.6143 12 6 8.9338 -4.4037 -0.0289 13 1 9.1846 -4.7412 0.9767 14 7 10.1110 -4.4681 -0.9053 15 6 10.9674 -5.6086 -0.5536 16 6 12.1615 -5.6423 -1.4723 17 8 12.2866 -4.7994 -2.3355 18 7 13.0905 -6.6090 -1.3348 19 6 14.1772 -6.6393 -2.1703 20 1 14.2885 -5.8887 -2.9389 21 6 15.1320 -7.6393 -2.0323 22 7 14.9962 -8.5528 -1.0974 23 14 16.6085 -7.6851 -3.1756 24 1 17.3839 -6.4266 -3.0334 25 1 17.4720 -8.8406 -2.8228 26 1 16.1436 -7.8242 -4.5791 27 6 8.3549 -2.9736 0.0034 28 1 8.6841 -2.4608 0.9073 29 6 8.8127 -2.1987 -1.2338 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.9971 -1.8763 -0.8908 34 1 1.9971 -1.8771 0.8892 35 1 4.0277 -0.4546 0.8906 36 1 4.0284 -0.4534 -0.8894 37 1 4.2667 -2.9220 -0.8900 38 1 4.2660 -2.9224 0.8899 39 1 5.6520 -4.7042 -0.6166 40 1 6.3618 -4.8819 1.0161 41 1 7.7510 -5.1830 -1.7026 42 1 7.8256 -6.2788 -0.2818 43 1 9.8376 -4.5070 -1.8759 44 1 10.4017 -6.5342 -0.6597 45 1 11.3048 -5.5053 0.4777 46 1 12.9904 -7.2833 -0.6448 47 1 15.6630 -9.2507 -1.0009 48 1 8.4627 -2.7081 -2.1317 49 1 8.4003 -1.1903 -1.2042 50 1 9.9013 -2.1458 -1.2472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331849568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:46 Heat of formation + Delta-G solvation = -114.969454 kcal Electronic energy + Delta-G solvation = -28852.707548 eV Core-core repulsion = 24686.645407 eV Total energy + Delta-G solvation = -4166.062141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.53637 -39.83718 -38.54771 -37.78851 -34.75692 -34.65311 -33.80821 -31.57358 -31.23546 -31.05818 -30.55520 -28.19809 -26.63262 -25.21830 -24.02658 -23.39202 -22.39583 -20.27477 -20.01250 -19.33752 -18.95381 -17.95548 -17.37939 -16.64247 -16.30219 -16.08585 -16.01706 -15.56206 -15.40544 -15.07204 -14.90314 -14.53388 -14.22593 -13.88588 -13.73227 -13.66480 -13.32482 -12.98746 -12.88501 -12.80458 -12.69600 -12.47413 -12.36658 -12.21543 -12.16444 -12.10936 -11.79986 -11.55542 -11.49314 -11.42035 -11.15315 -11.03236 -10.86451 -10.77943 -10.45200 -10.22743 -10.11521 -9.77360 -9.51486 -8.78508 -8.49384 -8.09055 -7.97583 -6.43311 -3.84149 1.56275 2.51987 2.74427 3.19364 3.25187 3.29725 3.60650 3.88516 4.01694 4.15402 4.23362 4.37010 4.49080 4.54473 4.58177 4.69173 4.79007 4.84518 4.87362 4.99947 5.02480 5.09120 5.11758 5.13810 5.15991 5.19835 5.24054 5.32140 5.50811 5.55535 5.59948 5.63673 5.74452 5.76025 5.83953 5.86693 5.95813 6.01682 6.16425 6.24515 6.43880 6.61878 7.11395 7.14632 7.39666 7.53694 7.57064 8.04383 8.06702 8.59371 9.16308 9.52323 10.03714 10.74264 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.001557 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.768471 B =17978.979799 C =18303.802574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.349 3.651 3 O -0.452 6.452 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.136 4.136 7 C 0.526 3.474 8 O -0.533 6.533 9 N -0.618 5.618 10 C 0.103 3.897 11 C -0.167 4.167 12 C 0.082 3.918 13 H 0.093 0.907 14 N -0.653 5.653 15 C 0.051 3.949 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.144 3.856 28 H 0.077 0.923 29 C -0.152 4.152 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.354 0.646 44 H 0.044 0.956 45 H 0.087 0.913 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.047 0.953 49 H 0.059 0.941 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.033 4.775 5.998 30.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.224 3.776 3 O -0.325 6.325 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.176 4.176 7 C 0.315 3.685 8 O -0.410 6.410 9 N -0.354 5.354 10 C -0.021 4.021 11 C -0.207 4.207 12 C -0.030 4.030 13 H 0.111 0.889 14 N -0.285 5.285 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C 0.041 3.959 28 H 0.095 0.905 29 C -0.210 4.210 30 H 0.110 0.890 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.175 0.825 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.225 0.775 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.078 0.922 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.935 6.874 5.821 29.351 hybrid contribution 0.048 -1.693 -0.382 1.736 sum -27.887 5.181 5.439 28.881 Atomic orbital electron populations 1.22337 0.94525 1.04977 1.04475 1.24640 0.91933 0.90410 0.70584 1.90462 1.71974 1.35166 1.34917 1.22163 0.96572 0.97605 1.04714 1.21163 0.91573 0.95914 1.04951 1.21666 0.91741 0.99963 1.04184 1.20296 0.88012 0.84040 0.76188 1.90729 1.80027 1.20780 1.49436 1.48763 1.06998 1.06094 1.73540 1.22238 0.98284 0.80686 1.00850 1.23586 0.95494 1.00125 1.01521 1.22623 0.88982 0.93356 0.98030 0.88864 1.60053 1.16745 1.43678 1.08050 1.21707 0.94328 0.91927 1.00229 1.19790 0.85482 0.84511 0.87709 1.90534 1.78372 1.40282 1.37479 1.41849 1.20319 1.25784 1.31993 1.19660 0.98622 1.11950 1.12766 0.87965 1.25250 0.99424 0.95539 0.97621 1.69604 1.36685 1.15259 1.32778 0.85921 0.80541 0.77739 0.80045 1.19861 1.20975 1.19929 1.21560 0.78199 0.96091 1.00048 0.90483 1.21935 1.03455 0.99799 0.95819 0.89018 0.90099 0.89007 0.88301 0.88323 0.90565 0.90525 0.88989 0.88999 0.90700 0.91156 0.90206 0.89634 0.82480 0.93757 0.89504 0.77479 0.91828 0.93365 0.92153 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.68 10.26 36.01 0.37 -0.31 16 2 C 0.35 2.33 7.27 -29.03 -0.21 2.12 16 3 O -0.45 -5.26 16.71 6.00 0.10 -5.16 16 4 C -0.17 -0.79 5.64 -27.88 -0.16 -0.95 16 5 C -0.10 -0.80 3.79 -26.74 -0.10 -0.91 16 6 C -0.14 -0.94 4.71 -27.88 -0.13 -1.07 16 7 C 0.53 6.06 7.63 -10.98 -0.08 5.98 16 8 O -0.53 -8.47 14.89 5.56 0.08 -8.39 16 9 N -0.62 -6.47 3.09 -162.79 -0.50 -6.97 16 10 C 0.10 0.74 6.69 -2.53 -0.02 0.72 16 11 C -0.17 -1.44 6.67 -24.58 -0.16 -1.60 16 12 C 0.08 0.92 3.11 -65.88 -0.21 0.71 16 13 H 0.09 0.97 7.86 -51.93 -0.41 0.57 16 14 N -0.65 -9.74 4.44 -106.06 -0.47 -10.21 16 15 C 0.05 0.83 6.04 -4.98 -0.03 0.80 16 16 C 0.44 10.05 7.82 -10.98 -0.09 9.97 16 17 O -0.58 -15.49 15.78 5.55 0.09 -15.41 16 18 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 19 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -24.20 13.05 55.50 0.72 -23.47 16 23 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C 0.14 1.78 3.50 -66.79 -0.23 1.54 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 29 C -0.15 -2.15 8.22 37.16 0.31 -1.85 16 30 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.34 8.12 -51.93 -0.42 -0.08 16 32 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.10 0.23 8.14 -51.92 -0.42 -0.19 16 35 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 37 H 0.09 0.47 7.84 -51.93 -0.41 0.06 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.39 7.47 -51.93 -0.39 0.01 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.75 7.79 -51.93 -0.40 0.34 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 43 H 0.35 5.56 7.36 -39.29 -0.29 5.28 16 44 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 46 H 0.39 9.24 7.90 -40.82 -0.32 8.92 16 47 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.05 0.66 7.93 -51.93 -0.41 0.25 16 49 H 0.06 0.94 6.77 -51.93 -0.35 0.59 16 50 H 0.09 1.38 7.40 -51.93 -0.38 1.00 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -35.49 410.01 -8.23 -43.72 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: -8.36 Total: 10.60 kcal Atomic # 6 Polarization: 8.22 SS G_CDS: -0.99 Total: 7.24 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.31 Total: -54.65 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: 0.27 Total: -28.96 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.49 -8.23 -43.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331849568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.252 kcal (2) G-P(sol) polarization free energy of solvation -35.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds