Wall clock time and date at job start Sat Apr 11 2020 05:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20753 * 120.00275 * 2 1 4 4 C 1.50707 * 119.99939 * 180.02562 * 2 1 3 5 5 C 1.52993 * 109.47090 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47130 * 179.97438 * 5 4 2 7 7 C 1.50708 * 109.47195 * 179.97438 * 6 5 4 8 8 O 1.21278 * 120.00060 * 359.97438 * 7 6 5 9 9 N 1.34775 * 119.99745 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.65157 * 0.02562 * 9 7 6 11 11 C 1.54912 * 104.83229 * 155.83810 * 10 9 7 12 12 C 1.55156 * 101.57907 * 37.01106 * 11 10 9 13 13 H 1.08993 * 110.72028 * 83.04206 * 12 11 10 14 14 N 1.46903 * 110.71850 * 206.13371 * 12 11 10 15 15 C 1.46896 * 110.99955 * 271.16036 * 14 12 11 16 16 C 1.50700 * 109.46942 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99793 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99770 * 23 21 19 27 27 C 1.47317 * 125.61293 * 180.16581 * 9 7 6 28 28 H 1.09004 * 110.06810 * 61.74954 * 27 9 7 29 29 C 1.52997 * 109.85142 * 300.49033 * 27 9 7 30 30 H 1.08993 * 109.47395 * 239.99477 * 1 2 3 31 31 H 1.09000 * 109.46942 * 0.02562 * 1 2 3 32 32 H 1.09005 * 109.46804 * 120.00037 * 1 2 3 33 33 H 1.08997 * 109.46956 * 59.99728 * 4 2 1 34 34 H 1.09008 * 109.46530 * 299.99916 * 4 2 1 35 35 H 1.09000 * 109.47327 * 59.99605 * 5 4 2 36 36 H 1.09005 * 109.46988 * 299.99957 * 5 4 2 37 37 H 1.09000 * 109.47263 * 59.99657 * 6 5 4 38 38 H 1.08996 * 109.47104 * 299.99886 * 6 5 4 39 39 H 1.09000 * 110.36474 * 36.99686 * 10 9 7 40 40 H 1.08997 * 110.46152 * 274.72550 * 10 9 7 41 41 H 1.09003 * 111.00074 * 278.94093 * 11 10 9 42 42 H 1.09000 * 111.00393 * 155.08555 * 11 10 9 43 43 H 1.00907 * 111.00029 * 35.11549 * 14 12 11 44 44 H 1.08994 * 109.47346 * 60.00149 * 15 14 12 45 45 H 1.08998 * 109.47279 * 299.99821 * 15 14 12 46 46 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 47 47 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 48 48 H 1.09003 * 109.47014 * 302.39512 * 29 27 9 49 49 H 1.08993 * 109.47233 * 62.39159 * 29 27 9 50 50 H 1.08997 * 109.47598 * 182.39595 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0457 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0256 0.0002 6 6 4.5297 -2.3506 0.0002 7 6 6.0114 -2.0753 0.0004 8 8 6.4157 -0.9319 -0.0001 9 7 6.8871 -3.0997 -0.0001 10 6 6.5349 -4.5313 -0.0013 11 6 7.7671 -5.2423 -0.6143 12 6 8.9338 -4.4037 -0.0289 13 1 9.1846 -4.7412 0.9767 14 7 10.1110 -4.4681 -0.9053 15 6 10.9674 -5.6086 -0.5536 16 6 12.1615 -5.6423 -1.4723 17 8 12.2866 -4.7994 -2.3355 18 7 13.0905 -6.6090 -1.3348 19 6 14.1772 -6.6393 -2.1703 20 1 14.2885 -5.8887 -2.9389 21 6 15.1320 -7.6393 -2.0323 22 7 14.9962 -8.5528 -1.0974 23 14 16.6085 -7.6851 -3.1756 24 1 17.3839 -6.4266 -3.0334 25 1 17.4720 -8.8406 -2.8228 26 1 16.1436 -7.8242 -4.5791 27 6 8.3549 -2.9736 0.0034 28 1 8.6841 -2.4608 0.9073 29 6 8.8127 -2.1987 -1.2338 30 1 -0.3634 -0.5139 0.8899 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 1.9971 -1.8763 -0.8908 34 1 1.9971 -1.8771 0.8892 35 1 4.0277 -0.4546 0.8906 36 1 4.0284 -0.4534 -0.8894 37 1 4.2667 -2.9220 -0.8900 38 1 4.2660 -2.9224 0.8899 39 1 5.6520 -4.7042 -0.6166 40 1 6.3618 -4.8819 1.0161 41 1 7.7510 -5.1830 -1.7026 42 1 7.8256 -6.2788 -0.2818 43 1 9.8376 -4.5070 -1.8759 44 1 10.4017 -6.5342 -0.6597 45 1 11.3048 -5.5053 0.4777 46 1 12.9904 -7.2833 -0.6448 47 1 15.6630 -9.2507 -1.0009 48 1 8.4627 -2.7081 -2.1317 49 1 8.4003 -1.1903 -1.2042 50 1 9.9013 -2.1458 -1.2472 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331849568.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:44 Heat of formation + Delta-G solvation = -141.263684 kcal Electronic energy + Delta-G solvation = -28853.847751 eV Core-core repulsion = 24686.645407 eV Total energy + Delta-G solvation = -4167.202344 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.39987 -40.45870 -40.10630 -38.98184 -36.16813 -35.52240 -35.27648 -33.26005 -32.39346 -31.78388 -31.32108 -28.82443 -28.00413 -26.49774 -25.44488 -24.21993 -23.03717 -21.19092 -21.04735 -20.51291 -19.91564 -19.80190 -18.28926 -17.65439 -17.27862 -17.05998 -16.81829 -16.63649 -16.31815 -16.21039 -15.97204 -15.74758 -15.55346 -15.24679 -14.82175 -14.61279 -14.30601 -14.10810 -13.91528 -13.62699 -13.48017 -13.37107 -13.34308 -13.11073 -13.01583 -12.95750 -12.78964 -12.73553 -12.65532 -12.51042 -12.41859 -12.31687 -12.12076 -11.83207 -11.72698 -11.64108 -11.48855 -10.85908 -10.50831 -10.32001 -9.99545 -9.64957 -9.25095 -8.45466 -5.93726 1.09349 1.40212 1.42458 1.52746 1.67998 1.94137 2.08260 2.30460 2.93864 3.19936 3.22285 3.41609 3.51723 3.68019 3.83775 4.04772 4.07788 4.09422 4.16002 4.18714 4.34485 4.37189 4.46239 4.47777 4.54120 4.58377 4.63468 4.63991 4.70030 4.74820 4.76793 4.79895 4.84187 4.90287 5.01219 5.10483 5.13977 5.18192 5.29220 5.35948 5.37802 5.42171 5.45395 5.91454 6.12912 6.37986 6.59743 6.62484 6.67046 7.14657 7.22345 7.58889 8.14824 8.71497 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.041486 B = 0.001557 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.768471 B =17978.979799 C =18303.802574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.345 3.655 3 O -0.519 6.519 4 C -0.165 4.165 5 C -0.097 4.097 6 C -0.122 4.122 7 C 0.513 3.487 8 O -0.593 6.593 9 N -0.617 5.617 10 C 0.103 3.897 11 C -0.160 4.160 12 C 0.086 3.914 13 H 0.109 0.891 14 N -0.672 5.672 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.143 3.857 28 H 0.060 0.940 29 C -0.140 4.140 30 H 0.118 0.882 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.132 0.868 34 H 0.135 0.865 35 H 0.042 0.958 36 H 0.039 0.961 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.347 0.653 44 H 0.076 0.924 45 H 0.105 0.895 46 H 0.397 0.603 47 H 0.277 0.723 48 H 0.048 0.952 49 H 0.037 0.963 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.764 1.413 6.872 32.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.225 3.775 3 O -0.397 6.397 4 C -0.201 4.201 5 C -0.136 4.136 6 C -0.161 4.161 7 C 0.304 3.696 8 O -0.473 6.473 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.200 4.200 12 C -0.025 4.025 13 H 0.127 0.873 14 N -0.304 5.304 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.813 3.187 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.197 1.197 27 C 0.039 3.961 28 H 0.078 0.922 29 C -0.198 4.198 30 H 0.136 0.864 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.124 0.876 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.167 0.833 44 H 0.094 0.906 45 H 0.123 0.877 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.713 3.441 6.726 31.628 hybrid contribution 0.873 -0.596 -0.651 1.241 sum -29.840 2.845 6.075 30.584 Atomic orbital electron populations 1.22357 0.91721 1.04851 1.06843 1.25453 0.93731 0.90315 0.67984 1.90460 1.73436 1.37440 1.38376 1.22214 0.93080 0.97005 1.07851 1.21074 0.94813 0.96073 1.01617 1.21702 0.87534 0.99607 1.07247 1.21290 0.90059 0.83315 0.74928 1.90711 1.81211 1.23316 1.52082 1.48838 1.05781 1.07794 1.72660 1.22537 0.98593 0.77796 1.02962 1.23549 0.94490 1.00918 1.01009 1.22625 0.88656 0.92999 0.98236 0.87273 1.59964 1.18697 1.43478 1.08237 1.21543 0.91975 0.93900 0.98940 1.20973 0.86362 0.82765 0.87533 1.90506 1.79554 1.41618 1.39531 1.41905 1.20387 1.26648 1.32023 1.19612 1.00725 1.12472 1.13703 0.90541 1.25966 1.01388 0.94787 0.98833 1.69656 1.37480 1.15394 1.33385 0.85041 0.77449 0.77954 0.78208 1.20023 1.19405 1.19726 1.21411 0.80139 0.96615 0.97970 0.92150 1.21757 1.01774 0.99022 0.97250 0.86369 0.91619 0.86493 0.85006 0.84766 0.93922 0.94238 0.85834 0.85387 0.87606 0.88532 0.91066 0.87332 0.83276 0.90599 0.87683 0.76869 0.91312 0.93245 0.94421 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.87 10.26 71.24 0.73 -0.14 16 2 C 0.35 4.32 7.27 29.10 0.21 4.53 16 3 O -0.52 -13.04 16.71 -1.43 -0.02 -13.06 16 4 C -0.16 -1.01 5.64 29.85 0.17 -0.84 16 5 C -0.10 -1.56 3.79 30.59 0.12 -1.45 16 6 C -0.12 -1.33 4.71 29.85 0.14 -1.19 16 7 C 0.51 11.50 7.63 87.66 0.67 12.17 16 8 O -0.59 -20.11 14.89 -3.02 -0.04 -20.16 16 9 N -0.62 -11.80 3.09 -787.35 -2.43 -14.23 16 10 C 0.10 1.00 6.69 86.86 0.58 1.58 16 11 C -0.16 -2.14 6.67 31.99 0.21 -1.93 16 12 C 0.09 1.75 3.11 46.10 0.14 1.89 16 13 H 0.11 1.92 7.86 -2.39 -0.02 1.90 16 14 N -0.67 -19.51 4.44 -489.47 -2.17 -21.68 16 15 C 0.07 2.12 6.04 85.56 0.52 2.64 16 16 C 0.44 20.07 7.82 87.66 0.69 20.75 16 17 O -0.63 -34.28 15.78 -3.07 -0.05 -34.33 16 18 N -0.57 -28.61 5.29 -306.98 -1.62 -30.23 16 19 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 20 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 21 C -0.01 -0.52 5.50 84.92 0.47 -0.05 16 22 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 23 Si 0.99 42.70 29.55 68.60 2.03 44.72 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.14 3.50 3.50 45.28 0.16 3.66 16 28 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 29 C -0.14 -4.21 8.22 71.98 0.59 -3.62 16 30 H 0.12 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.06 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 33 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.13 -0.04 8.14 -2.38 -0.02 -0.06 16 35 H 0.04 0.95 8.06 -2.39 -0.02 0.93 16 36 H 0.04 0.90 8.06 -2.38 -0.02 0.89 16 37 H 0.12 0.63 7.84 -2.39 -0.02 0.61 16 38 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.11 0.46 7.47 -2.39 -0.02 0.44 16 40 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 1.12 7.79 -2.39 -0.02 1.10 16 42 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.35 10.87 7.36 -89.69 -0.66 10.21 16 44 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.11 2.93 8.08 -2.39 -0.02 2.91 16 46 H 0.40 18.65 7.90 -92.71 -0.73 17.91 16 47 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 48 H 0.05 1.42 7.93 -2.39 -0.02 1.40 16 49 H 0.04 1.28 6.77 -2.39 -0.02 1.26 16 50 H 0.06 2.23 7.40 -2.39 -0.02 2.21 16 Total: -1.00 -86.12 410.01 1.73 -84.38 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -0.44 Total: 33.06 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.21 Total: 19.93 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -5.94 Total: -114.55 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -0.12 Total: -67.55 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -86.12 1.73 -84.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331849568.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.879 kcal (2) G-P(sol) polarization free energy of solvation -86.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds