Wall clock time and date at job start Sat Apr 11 2020 05:46:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.20762 * 119.99985 * 2 1 4 4 C 1.50704 * 119.99617 * 180.02562 * 2 1 3 5 5 C 1.53001 * 109.46508 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46680 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.47224 * 179.97438 * 6 5 4 8 8 O 1.21286 * 119.99783 * 0.02562 * 7 6 5 9 9 N 1.34773 * 120.00044 * 180.02562 * 7 6 5 10 10 C 1.47417 * 125.64942 * 359.95625 * 9 7 6 11 11 C 1.54909 * 104.83171 * 155.91103 * 10 9 7 12 12 C 1.55153 * 101.58389 * 37.01245 * 11 10 9 13 13 H 1.08996 * 110.87283 * 82.92827 * 12 11 10 14 14 N 1.46893 * 110.72317 * 206.13585 * 12 11 10 15 15 C 1.46903 * 111.00304 * 268.51989 * 14 12 11 16 16 C 1.50696 * 109.47177 * 179.97438 * 15 14 12 17 17 O 1.21292 * 120.00262 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99627 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99714 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00232 * 0.02562 * 19 18 16 21 21 C 1.38955 * 119.99992 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00236 * 179.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.47022 * 125.64568 * 180.02562 * 9 7 6 28 28 H 1.08996 * 109.88415 * 300.43612 * 27 9 7 29 29 C 1.53008 * 110.01152 * 61.53502 * 27 9 7 30 30 H 1.08998 * 109.47375 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47197 * 300.00304 * 1 2 3 32 32 H 1.09000 * 109.47107 * 59.99489 * 1 2 3 33 33 H 1.08997 * 109.47032 * 60.00058 * 4 2 1 34 34 H 1.09000 * 109.46706 * 299.99550 * 4 2 1 35 35 H 1.08997 * 109.47471 * 60.00272 * 5 4 2 36 36 H 1.09000 * 109.47224 * 299.99178 * 5 4 2 37 37 H 1.09007 * 109.46726 * 59.99895 * 6 5 4 38 38 H 1.08993 * 109.47601 * 299.99946 * 6 5 4 39 39 H 1.09008 * 110.37081 * 274.74975 * 10 9 7 40 40 H 1.09005 * 110.36796 * 36.96492 * 10 9 7 41 41 H 1.09001 * 111.00541 * 278.93378 * 11 10 9 42 42 H 1.09003 * 111.00270 * 155.08916 * 11 10 9 43 43 H 1.00899 * 111.00478 * 144.56168 * 14 12 11 44 44 H 1.09005 * 109.46883 * 59.99694 * 15 14 12 45 45 H 1.09002 * 109.46817 * 300.00144 * 15 14 12 46 46 H 0.96999 * 120.00048 * 0.02562 * 18 16 15 47 47 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 48 48 H 1.08997 * 109.46673 * 177.88659 * 29 27 9 49 49 H 1.09008 * 109.46651 * 297.87934 * 29 27 9 50 50 H 1.08998 * 109.47281 * 57.88062 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3052 -0.0006 5 6 3.7647 -1.0255 0.0002 6 6 4.5297 -2.3506 0.0002 7 6 6.0113 -2.0753 0.0004 8 8 6.4156 -0.9318 0.0009 9 7 6.8871 -3.0998 -0.0001 10 6 6.5348 -4.5312 0.0002 11 6 7.7672 -5.2430 -0.6117 12 6 8.9338 -4.4038 -0.0269 13 1 9.1851 -4.7369 0.9801 14 7 10.1112 -4.4692 -0.9028 15 6 10.9991 -5.5716 -0.5100 16 6 12.1926 -5.6074 -1.4294 17 8 12.2939 -4.7942 -2.3237 18 7 13.1480 -6.5424 -1.2574 19 6 14.2339 -6.5746 -2.0935 20 1 14.3241 -5.8505 -2.8897 21 6 15.2187 -7.5389 -1.9165 22 7 16.2594 -7.5701 -2.7183 23 14 15.0630 -8.7909 -0.5389 24 1 15.7111 -8.2605 0.6875 25 1 13.6266 -9.0513 -0.2666 26 1 15.7277 -10.0561 -0.9425 27 6 8.3520 -2.9747 0.0005 28 1 8.6775 -2.4251 -0.8827 29 6 8.8150 -2.2483 1.2651 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.9971 -1.8763 -0.8908 34 1 1.9971 -1.8770 0.8892 35 1 4.0277 -0.4546 0.8906 36 1 4.0284 -0.4535 -0.8894 37 1 4.2667 -2.9220 -0.8901 38 1 4.2660 -2.9224 0.8899 39 1 6.3626 -4.8794 1.0187 40 1 5.6510 -4.7046 -0.6138 41 1 7.7514 -5.1850 -1.7001 42 1 7.8255 -6.2791 -0.2781 43 1 10.6068 -3.5903 -0.9087 44 1 10.4588 -6.5158 -0.5797 45 1 11.3347 -5.4199 0.5159 46 1 13.0672 -7.1925 -0.5421 47 1 16.9470 -8.2430 -2.5945 48 1 9.9035 -2.1937 1.2747 49 1 8.4004 -1.2402 1.2773 50 1 8.4707 -2.7935 2.1439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331849570.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:55 Heat of formation + Delta-G solvation = -111.192460 kcal Electronic energy + Delta-G solvation = -28798.008761 eV Core-core repulsion = 24632.110403 eV Total energy + Delta-G solvation = -4165.898358 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.57985 -39.85144 -38.64627 -37.89578 -34.85221 -34.68867 -33.86912 -31.83144 -31.65520 -31.21447 -30.69546 -28.23546 -27.10810 -25.07818 -23.75604 -23.52176 -22.11520 -20.66185 -20.05372 -19.47126 -19.05382 -18.31787 -17.27630 -16.87048 -16.44302 -16.16957 -16.04928 -15.47101 -15.40488 -15.31350 -14.88673 -14.69377 -14.24428 -14.02853 -13.93407 -13.53969 -13.32449 -13.17205 -13.09086 -12.97560 -12.77595 -12.59014 -12.43112 -12.32669 -12.19011 -12.14658 -11.90857 -11.83573 -11.76695 -11.49896 -11.26297 -11.17808 -11.08959 -10.80695 -10.61742 -10.14865 -9.99365 -9.86102 -9.59461 -8.87399 -8.62647 -8.27139 -8.19190 -6.32704 -3.84327 1.54384 2.45298 2.65886 3.00244 3.04586 3.13227 3.57840 3.71244 3.99403 4.06947 4.08664 4.35786 4.39693 4.51943 4.53898 4.63070 4.74694 4.80164 4.82868 4.90679 4.94999 5.01588 5.07314 5.11599 5.13242 5.18206 5.20862 5.23710 5.30543 5.39431 5.47278 5.51030 5.59676 5.71587 5.73175 5.75703 5.86548 5.90654 5.96509 6.02316 6.08853 6.18524 7.02771 7.09689 7.30260 7.46611 7.56085 7.98883 8.12613 8.57647 8.93221 9.40354 9.80238 10.80391 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035741 B = 0.001606 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.224179 B =17428.606864 C =17636.202483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.351 3.649 3 O -0.454 6.454 4 C -0.173 4.173 5 C -0.098 4.098 6 C -0.135 4.135 7 C 0.526 3.474 8 O -0.535 6.535 9 N -0.613 5.613 10 C 0.099 3.901 11 C -0.124 4.124 12 C 0.078 3.922 13 H 0.063 0.937 14 N -0.656 5.656 15 C 0.049 3.951 16 C 0.449 3.551 17 O -0.563 6.563 18 N -0.590 5.590 19 C -0.306 4.306 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.269 1.269 26 H -0.276 1.276 27 C 0.132 3.868 28 H 0.087 0.913 29 C -0.164 4.164 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.354 0.646 44 H 0.088 0.912 45 H 0.046 0.954 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.540 4.094 11.645 33.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.226 3.774 3 O -0.327 6.327 4 C -0.211 4.211 5 C -0.136 4.136 6 C -0.175 4.175 7 C 0.315 3.685 8 O -0.411 6.411 9 N -0.349 5.349 10 C -0.024 4.024 11 C -0.163 4.163 12 C -0.033 4.033 13 H 0.080 0.920 14 N -0.290 5.290 15 C -0.084 4.084 16 C 0.235 3.765 17 O -0.445 6.445 18 N -0.229 5.229 19 C -0.435 4.435 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.521 5.521 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.195 1.195 26 H -0.202 1.202 27 C 0.029 3.971 28 H 0.105 0.895 29 C -0.222 4.222 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.109 0.891 42 H 0.101 0.899 43 H 0.175 0.825 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -31.076 5.438 10.475 33.242 hybrid contribution 0.400 -1.137 1.872 2.227 sum -30.677 4.301 12.348 33.347 Atomic orbital electron populations 1.22281 0.94560 1.04573 1.04805 1.24654 0.91904 0.90412 0.70449 1.90463 1.71870 1.35232 1.35174 1.22203 0.96519 0.97635 1.04707 1.21171 0.91644 0.95875 1.04940 1.21662 0.91489 1.00033 1.04313 1.20345 0.88113 0.83971 0.76052 1.90731 1.80058 1.20799 1.49532 1.48527 1.06368 1.06431 1.73529 1.22387 0.98900 0.80266 1.00863 1.22883 0.92275 0.98754 1.02395 1.22632 0.91876 0.93681 0.95135 0.91965 1.60150 1.08573 1.08388 1.51880 1.21759 0.93831 0.96071 0.96724 1.19676 0.84501 0.84495 0.87865 1.90579 1.78245 1.40918 1.34768 1.42197 1.20996 1.29195 1.30546 1.19438 0.96229 1.16058 1.11736 0.86267 1.25040 0.95613 0.97761 0.97692 1.69623 1.09968 1.35230 1.37231 0.86671 0.78365 0.81877 0.82450 1.19668 1.19495 1.20159 1.21678 0.79804 0.96161 0.99496 0.89472 1.22164 1.01551 1.01839 0.96633 0.90014 0.89116 0.89070 0.88192 0.88272 0.90604 0.90493 0.88806 0.88941 0.91368 0.90372 0.89110 0.89950 0.82488 0.89392 0.93572 0.79706 0.91597 0.91554 0.90959 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -0.64 10.33 36.01 0.37 -0.27 16 2 C 0.35 2.26 7.27 -29.03 -0.21 2.05 16 3 O -0.45 -5.17 16.72 6.00 0.10 -5.07 16 4 C -0.17 -0.75 5.55 -27.88 -0.15 -0.90 16 5 C -0.10 -0.78 3.79 -26.73 -0.10 -0.88 16 6 C -0.14 -0.89 4.71 -27.88 -0.13 -1.02 16 7 C 0.53 5.83 7.64 -10.99 -0.08 5.75 16 8 O -0.53 -8.20 15.03 5.55 0.08 -8.11 16 9 N -0.61 -6.18 3.07 -163.01 -0.50 -6.68 16 10 C 0.10 0.69 6.69 -2.53 -0.02 0.67 16 11 C -0.12 -1.11 6.77 -24.58 -0.17 -1.27 16 12 C 0.08 0.84 2.81 -65.88 -0.19 0.66 16 13 H 0.06 0.62 7.53 -51.93 -0.39 0.23 16 14 N -0.66 -9.58 5.97 -106.06 -0.63 -10.21 16 15 C 0.05 0.76 6.03 -4.98 -0.03 0.73 16 16 C 0.45 9.94 7.82 -10.98 -0.09 9.85 16 17 O -0.56 -14.96 15.78 5.55 0.09 -14.87 16 18 N -0.59 -13.77 5.09 -10.96 -0.06 -13.83 16 19 C -0.31 -8.58 10.16 -14.93 -0.15 -8.74 16 20 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.58 13.96 55.50 0.77 -24.81 16 23 Si 0.88 19.05 27.74 -169.99 -4.71 14.34 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 27 C 0.13 1.52 2.96 -66.94 -0.20 1.32 16 28 H 0.09 1.20 7.90 -51.93 -0.41 0.79 16 29 C -0.16 -1.82 9.10 37.16 0.34 -1.48 16 30 H 0.08 0.07 8.00 -51.93 -0.42 -0.35 16 31 H 0.09 0.27 8.14 -51.92 -0.42 -0.16 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.10 0.21 8.14 -51.93 -0.42 -0.21 16 35 H 0.08 0.76 8.06 -51.93 -0.42 0.34 16 36 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 37 H 0.09 0.45 7.85 -51.93 -0.41 0.04 16 38 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 40 H 0.08 0.39 7.47 -51.93 -0.39 0.00 16 41 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.35 5.54 8.02 -39.29 -0.32 5.22 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.05 0.62 8.08 -51.93 -0.42 0.20 16 46 H 0.37 7.52 5.76 -40.82 -0.24 7.29 16 47 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 49 H 0.07 0.93 6.91 -51.92 -0.36 0.57 16 50 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 410.12 15.07 6.18 6.18 Total: -1.00 -37.14 410.12 -7.96 -45.11 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -8.38 Total: 10.44 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.90 Total: 7.51 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.41 Total: -55.52 kcal Atomic # 8 Polarization: -28.33 SS G_CDS: 0.27 Total: -28.06 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.14 -7.96 -45.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331849570.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.085 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds