Wall clock time and date at job start Sat Apr 11 2020 05:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87415 * 2 1 4 4 C 1.54322 * 109.88164 * 238.98256 * 2 1 3 5 5 H 1.08999 * 110.72085 * 144.08366 * 4 2 1 6 6 N 1.46902 * 110.72049 * 20.98641 * 4 2 1 7 7 C 1.46899 * 110.99838 * 161.87010 * 6 4 2 8 8 C 1.50705 * 109.47122 * 179.97438 * 7 6 4 9 9 O 1.21299 * 119.99587 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00268 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00170 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99832 * 0.02562 * 11 10 8 13 13 C 1.38943 * 120.00036 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47048 * 269.99711 * 15 13 11 17 17 H 1.48498 * 109.47183 * 29.99893 * 15 13 11 18 18 H 1.48500 * 109.47231 * 149.99549 * 15 13 11 19 19 C 1.55157 * 103.10626 * 262.53478 * 4 2 1 20 20 C 1.55123 * 101.48153 * 324.71914 * 19 4 2 21 21 N 1.47022 * 110.01081 * 121.09945 * 2 1 3 22 22 C 1.34773 * 125.65042 * 300.51434 * 21 2 1 23 23 O 1.21279 * 119.99837 * 359.97438 * 22 21 2 24 24 C 1.50704 * 120.00376 * 179.97438 * 22 21 2 25 25 O 1.42899 * 109.47190 * 179.97438 * 24 22 21 26 26 C 1.42894 * 114.00041 * 179.97438 * 25 24 22 27 27 C 1.52994 * 109.47333 * 180.02562 * 26 25 24 28 28 C 1.53007 * 117.50022 * 243.74634 * 27 26 25 29 29 C 1.53007 * 117.50142 * 175.08718 * 27 26 25 30 30 H 1.08993 * 109.47165 * 174.68114 * 1 2 3 31 31 H 1.08994 * 109.46721 * 294.68221 * 1 2 3 32 32 H 1.08996 * 109.46977 * 54.68143 * 1 2 3 33 33 H 1.00899 * 110.99792 * 37.92015 * 6 4 2 34 34 H 1.08999 * 109.47355 * 60.00859 * 7 6 4 35 35 H 1.08999 * 109.47701 * 300.00105 * 7 6 4 36 36 H 0.96994 * 119.99825 * 0.02562 * 10 8 7 37 37 H 0.97003 * 120.00217 * 180.02562 * 14 13 11 38 38 H 1.09000 * 111.00178 * 82.65650 * 19 4 2 39 39 H 1.09003 * 111.00553 * 206.51501 * 19 4 2 40 40 H 1.08999 * 110.20520 * 277.95503 * 20 19 4 41 41 H 1.09003 * 110.51213 * 155.75122 * 20 19 4 42 42 H 1.09005 * 109.46847 * 299.99763 * 24 22 21 43 43 H 1.08996 * 109.46961 * 59.99833 * 24 22 21 44 44 H 1.09001 * 109.47374 * 299.99841 * 26 25 24 45 45 H 1.09005 * 109.47039 * 59.99476 * 26 25 24 46 46 H 1.09000 * 115.55312 * 29.41724 * 27 26 25 47 47 H 1.09005 * 117.49438 * 0.02562 * 28 27 26 48 48 H 1.08998 * 117.50149 * 145.01799 * 28 27 26 49 49 H 1.08999 * 117.50037 * 214.97371 * 29 27 26 50 50 H 1.09003 * 117.49439 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9624 -0.2775 -1.6221 6 7 1.0252 -0.8028 -2.2901 7 6 1.6194 -1.1110 -3.5977 8 6 0.5352 -1.1595 -4.6433 9 8 -0.6189 -0.9567 -4.3300 10 7 0.8481 -1.4272 -5.9266 11 6 -0.1382 -1.4708 -6.8779 12 1 -1.1658 -1.2903 -6.5990 13 6 0.1843 -1.7473 -8.2008 14 7 1.4348 -1.9665 -8.5403 15 14 -1.1594 -1.8060 -9.4971 16 1 -1.6903 -3.1892 -9.5974 17 1 -2.2566 -0.8812 -9.1150 18 1 -0.5996 -1.3943 -10.8095 19 6 2.3591 -2.1680 -0.6980 20 6 2.8617 -1.8473 0.7341 21 7 2.0331 -0.7136 1.1829 22 6 1.7794 -0.3852 2.4652 23 8 1.0815 0.5737 2.7189 24 6 2.3629 -1.2095 3.5838 25 8 1.9538 -0.6652 4.8401 26 6 2.4551 -1.3772 5.9730 27 6 1.9561 -0.7103 7.2563 28 6 3.0042 -0.0984 8.1881 29 6 2.2907 -1.3936 8.5838 30 1 -0.3633 -1.0232 -0.0953 31 1 -0.3632 0.4291 0.9337 32 1 -0.3633 0.5941 -0.8385 33 1 0.4996 0.0577 -2.3256 34 1 2.1211 -2.0775 -3.5501 35 1 2.3427 -0.3387 -3.8593 36 1 1.7711 -1.5890 -6.1771 37 1 1.6600 -2.1592 -9.4639 38 1 1.4552 -2.7763 -0.6664 39 1 3.1357 -2.6551 -1.2877 40 1 3.9134 -1.5620 0.7089 41 1 2.7179 -2.7056 1.3905 42 1 2.0094 -2.2373 3.5002 43 1 3.4508 -1.1929 3.5180 44 1 2.1028 -2.4082 5.9392 45 1 3.5450 -1.3650 5.9567 46 1 0.9940 -0.2038 7.1795 47 1 4.0492 -0.1707 7.8865 48 1 2.7315 0.8104 8.7244 49 1 1.5489 -1.3362 9.3804 50 1 2.8667 -2.3181 8.5428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331862383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:00 Heat of formation + Delta-G solvation = -77.449203 kcal Electronic energy + Delta-G solvation = -28873.863992 eV Core-core repulsion = 24709.428851 eV Total energy + Delta-G solvation = -4164.435141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.55766 -38.98271 -38.33478 -37.70815 -36.64040 -34.80854 -33.82131 -31.57317 -31.21314 -30.89786 -28.89687 -26.85876 -26.36400 -25.20684 -23.81481 -23.15519 -22.83902 -21.22386 -20.22613 -19.36525 -19.14263 -17.93085 -17.71216 -17.06542 -16.71185 -16.25651 -16.12390 -15.77835 -15.46597 -15.26106 -14.76424 -14.56637 -14.45310 -14.02092 -13.84433 -13.70410 -13.46027 -13.15886 -12.95409 -12.73769 -12.39321 -12.34294 -12.16960 -12.00053 -11.94981 -11.61380 -11.55605 -11.52776 -11.39706 -11.09853 -10.93484 -10.91466 -10.74442 -10.67151 -10.40329 -10.23167 -9.98465 -9.84252 -9.52359 -8.86862 -8.49308 -8.14112 -7.97799 -6.43341 -3.84132 2.33614 2.41541 3.17104 3.21257 3.25967 3.31870 3.50892 3.88832 4.03456 4.10619 4.27218 4.35776 4.40228 4.41565 4.53830 4.64187 4.68352 4.75756 4.82598 4.95384 4.97195 4.99841 5.08515 5.15638 5.17893 5.20496 5.23078 5.28735 5.42807 5.46585 5.52848 5.60502 5.63848 5.73896 5.75632 5.81932 5.93445 6.03140 6.11547 6.24482 6.25544 6.51101 6.67573 7.14686 7.28289 7.53917 7.57064 7.98580 8.04699 8.59442 9.16462 9.52479 10.03817 10.74331 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.001552 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.161444 B =18041.781921 C =18317.070322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.140 3.860 3 H 0.074 0.926 4 C 0.077 3.923 5 H 0.058 0.942 6 N -0.654 5.654 7 C 0.050 3.950 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.270 1.270 18 H -0.284 1.284 19 C -0.122 4.122 20 C 0.095 3.905 21 N -0.612 5.612 22 C 0.530 3.470 23 O -0.515 6.515 24 C 0.050 3.950 25 O -0.360 6.360 26 C 0.092 3.908 27 C -0.154 4.154 28 C -0.177 4.177 29 C -0.173 4.173 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.354 0.646 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.116 0.884 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.222 -1.728 27.169 29.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.037 3.963 3 H 0.092 0.908 4 C -0.035 4.035 5 H 0.076 0.924 6 N -0.289 5.289 7 C -0.083 4.083 8 C 0.226 3.774 9 O -0.466 6.466 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.194 1.194 18 H -0.209 1.209 19 C -0.161 4.161 20 C -0.028 4.028 21 N -0.349 5.349 22 C 0.318 3.682 23 O -0.390 6.390 24 C -0.030 4.030 25 O -0.279 6.279 26 C 0.016 3.984 27 C -0.172 4.172 28 C -0.214 4.214 29 C -0.210 4.210 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.177 0.823 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.823 -1.547 27.561 28.980 hybrid contribution 0.774 0.296 -1.225 1.480 sum 9.597 -1.250 26.335 28.057 Atomic orbital electron populations 1.21987 0.93371 1.03577 1.02435 1.21602 0.96069 0.95259 0.83415 0.90808 1.22555 0.93996 0.95678 0.91227 0.92400 1.60315 1.23233 1.42270 1.03112 1.21724 0.95997 1.01417 0.89153 1.19782 0.89639 0.84635 0.83373 1.90535 1.20635 1.54770 1.80679 1.41852 1.10545 1.61721 1.05868 1.19708 0.90988 1.45123 0.87101 0.87906 1.25251 0.97194 0.97180 0.98241 1.69610 1.16997 1.48263 1.19460 0.85862 0.80381 0.78695 0.79384 1.20389 1.19414 1.20942 1.22907 1.02607 0.97198 0.93393 1.22464 0.94821 0.88828 0.96659 1.48425 1.50936 1.30944 1.04604 1.19789 0.81266 0.85267 0.81916 1.90734 1.37277 1.28175 1.82791 1.22151 0.99470 0.97023 0.84315 1.88006 1.73741 1.54021 1.12081 1.22071 0.97213 0.94726 0.84428 1.22117 1.01211 1.04350 0.89508 1.23092 0.97658 0.97257 1.03395 1.22996 1.03741 0.96872 0.97400 0.91268 0.91664 0.91175 0.82336 0.89551 0.93764 0.77485 0.91882 0.89089 0.89787 0.91116 0.90496 0.90223 0.90377 0.92593 0.92967 0.86581 0.88656 0.88501 0.88290 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.31 37.16 0.31 -1.81 16 2 C 0.14 1.67 3.41 -66.95 -0.23 1.44 16 3 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 4 C 0.08 0.87 3.10 -65.88 -0.20 0.67 16 5 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 6 N -0.65 -9.81 5.14 -106.05 -0.55 -10.35 16 7 C 0.05 0.82 6.02 -4.97 -0.03 0.79 16 8 C 0.44 10.08 7.82 -10.98 -0.09 10.00 16 9 O -0.58 -15.49 15.78 5.54 0.09 -15.40 16 10 N -0.56 -13.97 5.29 -10.96 -0.06 -14.02 16 11 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 15 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.12 -1.14 6.63 -24.47 -0.16 -1.31 16 20 C 0.10 0.71 6.70 -2.41 -0.02 0.70 16 21 N -0.61 -6.56 3.09 -162.88 -0.50 -7.06 16 22 C 0.53 6.55 7.71 -10.99 -0.08 6.47 16 23 O -0.52 -8.64 15.33 -14.35 -0.22 -8.86 16 24 C 0.05 0.44 5.42 36.01 0.20 0.63 16 25 O -0.36 -3.96 9.88 -55.14 -0.54 -4.51 16 26 C 0.09 0.68 6.22 37.15 0.23 0.91 16 27 C -0.15 -1.13 6.05 -90.62 -0.55 -1.68 16 28 C -0.18 -1.07 10.18 -26.69 -0.27 -1.34 16 29 C -0.17 -0.92 10.26 -26.69 -0.27 -1.19 16 30 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.06 0.98 6.59 -51.93 -0.34 0.64 16 32 H 0.07 0.96 6.62 -51.93 -0.34 0.62 16 33 H 0.35 5.66 6.38 -39.29 -0.25 5.40 16 34 H 0.09 1.29 8.06 -51.93 -0.42 0.87 16 35 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.42 7.47 -51.93 -0.39 0.03 16 42 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.31 7.88 -51.93 -0.41 -0.10 16 46 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 409.20 15.07 6.17 6.17 Total: -1.00 -34.18 409.20 -9.62 -43.79 By element: Atomic # 1 Polarization: 19.77 SS G_CDS: -8.29 Total: 11.48 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -1.41 Total: 6.38 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.38 Total: -54.93 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.68 Total: -28.77 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.18 -9.62 -43.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331862383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.655 kcal (2) G-P(sol) polarization free energy of solvation -34.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds