Wall clock time and date at job start Sat Apr 11 2020 05:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.87415 * 2 1 4 4 C 1.54322 * 109.88164 * 238.98256 * 2 1 3 5 5 H 1.08999 * 110.72085 * 144.08366 * 4 2 1 6 6 N 1.46902 * 110.72049 * 20.98641 * 4 2 1 7 7 C 1.46899 * 110.99838 * 161.87010 * 6 4 2 8 8 C 1.50705 * 109.47122 * 179.97438 * 7 6 4 9 9 O 1.21299 * 119.99587 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00268 * 179.97438 * 8 7 6 11 11 C 1.37098 * 120.00170 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99832 * 0.02562 * 11 10 8 13 13 C 1.38943 * 120.00036 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00220 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 119.99933 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47048 * 269.99711 * 15 13 11 17 17 H 1.48498 * 109.47183 * 29.99893 * 15 13 11 18 18 H 1.48500 * 109.47231 * 149.99549 * 15 13 11 19 19 C 1.55157 * 103.10626 * 262.53478 * 4 2 1 20 20 C 1.55123 * 101.48153 * 324.71914 * 19 4 2 21 21 N 1.47022 * 110.01081 * 121.09945 * 2 1 3 22 22 C 1.34773 * 125.65042 * 300.51434 * 21 2 1 23 23 O 1.21279 * 119.99837 * 359.97438 * 22 21 2 24 24 C 1.50704 * 120.00376 * 179.97438 * 22 21 2 25 25 O 1.42899 * 109.47190 * 179.97438 * 24 22 21 26 26 C 1.42894 * 114.00041 * 179.97438 * 25 24 22 27 27 C 1.52994 * 109.47333 * 180.02562 * 26 25 24 28 28 C 1.53007 * 117.50022 * 243.74634 * 27 26 25 29 29 C 1.53007 * 117.50142 * 175.08718 * 27 26 25 30 30 H 1.08993 * 109.47165 * 174.68114 * 1 2 3 31 31 H 1.08994 * 109.46721 * 294.68221 * 1 2 3 32 32 H 1.08996 * 109.46977 * 54.68143 * 1 2 3 33 33 H 1.00899 * 110.99792 * 37.92015 * 6 4 2 34 34 H 1.08999 * 109.47355 * 60.00859 * 7 6 4 35 35 H 1.08999 * 109.47701 * 300.00105 * 7 6 4 36 36 H 0.96994 * 119.99825 * 0.02562 * 10 8 7 37 37 H 0.97003 * 120.00217 * 180.02562 * 14 13 11 38 38 H 1.09000 * 111.00178 * 82.65650 * 19 4 2 39 39 H 1.09003 * 111.00553 * 206.51501 * 19 4 2 40 40 H 1.08999 * 110.20520 * 277.95503 * 20 19 4 41 41 H 1.09003 * 110.51213 * 155.75122 * 20 19 4 42 42 H 1.09005 * 109.46847 * 299.99763 * 24 22 21 43 43 H 1.08996 * 109.46961 * 59.99833 * 24 22 21 44 44 H 1.09001 * 109.47374 * 299.99841 * 26 25 24 45 45 H 1.09005 * 109.47039 * 59.99476 * 26 25 24 46 46 H 1.09000 * 115.55312 * 29.41724 * 27 26 25 47 47 H 1.09005 * 117.49438 * 0.02562 * 28 27 26 48 48 H 1.08998 * 117.50149 * 145.01799 * 28 27 26 49 49 H 1.08999 * 117.50037 * 214.97371 * 29 27 26 50 50 H 1.09003 * 117.49439 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7478 -1.2437 5 1 2.9624 -0.2775 -1.6221 6 7 1.0252 -0.8028 -2.2901 7 6 1.6194 -1.1110 -3.5977 8 6 0.5352 -1.1595 -4.6433 9 8 -0.6189 -0.9567 -4.3300 10 7 0.8481 -1.4272 -5.9266 11 6 -0.1382 -1.4708 -6.8779 12 1 -1.1658 -1.2903 -6.5990 13 6 0.1843 -1.7473 -8.2008 14 7 1.4348 -1.9665 -8.5403 15 14 -1.1594 -1.8060 -9.4971 16 1 -1.6903 -3.1892 -9.5974 17 1 -2.2566 -0.8812 -9.1150 18 1 -0.5996 -1.3943 -10.8095 19 6 2.3591 -2.1680 -0.6980 20 6 2.8617 -1.8473 0.7341 21 7 2.0331 -0.7136 1.1829 22 6 1.7794 -0.3852 2.4652 23 8 1.0815 0.5737 2.7189 24 6 2.3629 -1.2095 3.5838 25 8 1.9538 -0.6652 4.8401 26 6 2.4551 -1.3772 5.9730 27 6 1.9561 -0.7103 7.2563 28 6 3.0042 -0.0984 8.1881 29 6 2.2907 -1.3936 8.5838 30 1 -0.3633 -1.0232 -0.0953 31 1 -0.3632 0.4291 0.9337 32 1 -0.3633 0.5941 -0.8385 33 1 0.4996 0.0577 -2.3256 34 1 2.1211 -2.0775 -3.5501 35 1 2.3427 -0.3387 -3.8593 36 1 1.7711 -1.5890 -6.1771 37 1 1.6600 -2.1592 -9.4639 38 1 1.4552 -2.7763 -0.6664 39 1 3.1357 -2.6551 -1.2877 40 1 3.9134 -1.5620 0.7089 41 1 2.7179 -2.7056 1.3905 42 1 2.0094 -2.2373 3.5002 43 1 3.4508 -1.1929 3.5180 44 1 2.1028 -2.4082 5.9392 45 1 3.5450 -1.3650 5.9567 46 1 0.9940 -0.2038 7.1795 47 1 4.0492 -0.1707 7.8865 48 1 2.7315 0.8104 8.7244 49 1 1.5489 -1.3362 9.3804 50 1 2.8667 -2.3181 8.5428 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331862383.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:59 Heat of formation + Delta-G solvation = -101.377627 kcal Electronic energy + Delta-G solvation = -28874.901606 eV Core-core repulsion = 24709.428851 eV Total energy + Delta-G solvation = -4165.472755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.45023 -40.16800 -39.51063 -38.69148 -37.27458 -36.19287 -35.56173 -33.27140 -32.49326 -31.84156 -29.62797 -28.18470 -27.11557 -26.51844 -25.28731 -23.95710 -23.25492 -21.76159 -21.19984 -20.97514 -20.10877 -19.88751 -18.47499 -17.93312 -17.68303 -17.31615 -16.98486 -16.86090 -16.64851 -16.31791 -16.15515 -15.79127 -15.40523 -15.36187 -15.04345 -14.66910 -14.41186 -14.31948 -13.99241 -13.62234 -13.54848 -13.45908 -13.31188 -13.18320 -13.10077 -12.88487 -12.67156 -12.41261 -12.39126 -12.36969 -12.12254 -12.08084 -11.84824 -11.62691 -11.49242 -11.38468 -11.26898 -10.81052 -10.51727 -10.31962 -9.99492 -9.74152 -9.33932 -8.45614 -5.93815 1.38562 1.42639 1.52357 1.54591 1.58368 2.08026 2.30057 2.65491 2.92263 2.99518 3.22209 3.31707 3.52851 3.66350 3.71815 3.90918 3.96229 4.04174 4.11908 4.16077 4.21960 4.27925 4.32437 4.32944 4.34742 4.45830 4.50896 4.53546 4.60972 4.65197 4.69767 4.71431 4.75985 4.77797 5.01184 5.01553 5.06307 5.20649 5.24268 5.26497 5.29875 5.39459 5.42536 5.90674 6.09456 6.12169 6.33113 6.48124 6.62268 7.10563 7.14699 7.58771 8.14620 8.71623 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.043524 B = 0.001552 C = 0.001528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.161444 B =18041.781921 C =18317.070322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.139 3.861 3 H 0.068 0.932 4 C 0.080 3.920 5 H 0.079 0.921 6 N -0.669 5.669 7 C 0.067 3.933 8 C 0.437 3.563 9 O -0.625 6.625 10 N -0.572 5.572 11 C -0.334 4.334 12 H 0.077 0.923 13 C -0.010 4.010 14 N -0.919 5.919 15 Si 0.990 3.010 16 H -0.271 1.271 17 H -0.275 1.275 18 H -0.271 1.271 19 C -0.120 4.120 20 C 0.096 3.904 21 N -0.610 5.610 22 C 0.521 3.479 23 O -0.574 6.574 24 C 0.054 3.946 25 O -0.399 6.399 26 C 0.091 3.909 27 C -0.178 4.178 28 C -0.180 4.180 29 C -0.158 4.158 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.345 0.655 34 H 0.111 0.889 35 H 0.069 0.931 36 H 0.397 0.603 37 H 0.277 0.723 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.918 -3.483 27.762 30.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.035 3.965 3 H 0.086 0.914 4 C -0.030 4.030 5 H 0.097 0.903 6 N -0.303 5.303 7 C -0.066 4.066 8 C 0.224 3.776 9 O -0.511 6.511 10 N -0.210 5.210 11 C -0.464 4.464 12 H 0.095 0.905 13 C -0.210 4.210 14 N -0.560 5.560 15 Si 0.814 3.186 16 H -0.197 1.197 17 H -0.200 1.200 18 H -0.195 1.195 19 C -0.158 4.158 20 C -0.025 4.025 21 N -0.345 5.345 22 C 0.310 3.690 23 O -0.453 6.453 24 C -0.025 4.025 25 O -0.318 6.318 26 C 0.015 3.985 27 C -0.196 4.196 28 C -0.217 4.217 29 C -0.194 4.194 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.166 0.834 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.123 0.877 48 H 0.113 0.887 49 H 0.122 0.878 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.581 -3.346 28.154 30.626 hybrid contribution -0.086 0.863 -1.355 1.609 sum 11.495 -2.483 26.799 29.266 Atomic orbital electron populations 1.21839 0.95239 1.02297 1.00973 1.21499 0.94542 0.95634 0.84779 0.91352 1.22635 0.93410 0.97402 0.89586 0.90344 1.60327 1.24706 1.42076 1.03221 1.21575 0.93728 1.03585 0.87674 1.20940 0.90611 0.82206 0.83795 1.90508 1.23156 1.56031 1.81429 1.41906 1.10238 1.62484 1.06356 1.19646 0.90746 1.47353 0.88656 0.90521 1.25968 0.99372 0.96223 0.99437 1.69660 1.18075 1.48026 1.20199 0.84975 0.77722 0.78705 0.77224 1.19675 1.19994 1.19525 1.22927 1.02610 0.95427 0.94872 1.22740 0.95489 0.88552 0.95726 1.48500 1.50694 1.31451 1.03851 1.20614 0.80468 0.84911 0.83003 1.90705 1.39988 1.30870 1.83726 1.22271 1.01021 0.96954 0.82206 1.87968 1.74777 1.55564 1.13531 1.22231 0.98207 0.94960 0.83057 1.22147 1.00786 1.05876 0.90825 1.23179 0.97840 0.97754 1.02914 1.23084 1.03342 0.97090 0.95922 0.92443 0.93637 0.91946 0.83426 0.87105 0.91320 0.76880 0.91321 0.91006 0.87510 0.88210 0.87718 0.87552 0.87061 0.91140 0.91117 0.88921 0.87702 0.88713 0.87847 0.87010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.16 8.31 71.98 0.60 -3.56 16 2 C 0.14 3.26 3.41 45.34 0.15 3.41 16 3 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.08 1.64 3.10 46.10 0.14 1.78 16 5 H 0.08 1.36 7.93 -2.39 -0.02 1.34 16 6 N -0.67 -19.49 5.14 -489.44 -2.52 -22.00 16 7 C 0.07 2.08 6.02 85.56 0.52 2.59 16 8 C 0.44 20.12 7.82 87.66 0.69 20.81 16 9 O -0.62 -34.21 15.78 -3.09 -0.05 -34.26 16 10 N -0.57 -28.63 5.29 -306.98 -1.62 -30.25 16 11 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 12 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 13 C -0.01 -0.53 5.50 84.92 0.47 -0.07 16 14 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 15 Si 0.99 42.68 29.55 68.60 2.03 44.70 16 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 17 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 19 C -0.12 -1.85 6.63 32.06 0.21 -1.63 16 20 C 0.10 1.05 6.70 86.93 0.58 1.63 16 21 N -0.61 -12.01 3.09 -787.63 -2.43 -14.44 16 22 C 0.52 12.47 7.71 87.66 0.68 13.15 16 23 O -0.57 -20.03 15.33 16.01 0.25 -19.78 16 24 C 0.05 0.82 5.42 71.24 0.39 1.21 16 25 O -0.40 -8.45 9.88 -129.94 -1.28 -9.74 16 26 C 0.09 1.18 6.22 71.98 0.45 1.63 16 27 C -0.18 -2.53 6.05 -10.79 -0.07 -2.59 16 28 C -0.18 -1.98 10.18 30.62 0.31 -1.67 16 29 C -0.16 -1.42 10.26 30.62 0.31 -1.10 16 30 H 0.06 1.74 8.10 -2.39 -0.02 1.72 16 31 H 0.04 1.47 6.59 -2.39 -0.02 1.45 16 32 H 0.06 1.84 6.62 -2.39 -0.02 1.82 16 33 H 0.34 11.16 6.38 -89.69 -0.57 10.59 16 34 H 0.11 2.97 8.06 -2.39 -0.02 2.95 16 35 H 0.07 1.85 8.09 -2.39 -0.02 1.83 16 36 H 0.40 18.66 7.90 -92.71 -0.73 17.93 16 37 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.10 0.63 7.47 -2.39 -0.02 0.61 16 42 H 0.11 1.01 7.85 -2.38 -0.02 0.99 16 43 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.07 0.63 7.88 -2.38 -0.02 0.61 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.10 0.93 8.03 -2.38 -0.02 0.91 16 48 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -78.53 409.20 0.54 -77.99 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.35 Total: 38.64 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 6.24 Total: 17.58 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -6.29 Total: -115.13 kcal Atomic # 8 Polarization: -62.70 SS G_CDS: -1.09 Total: -63.78 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -78.53 0.54 -77.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331862383.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.392 kcal (2) G-P(sol) polarization free energy of solvation -78.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds