Wall clock time and date at job start Sat Apr 11 2020 05:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.00283 * 2 1 4 4 C 1.54323 * 109.88253 * 121.10198 * 2 1 3 5 5 H 1.08995 * 110.87570 * 23.17063 * 4 2 1 6 6 N 1.46903 * 110.71706 * 259.97056 * 4 2 1 7 7 C 1.46896 * 110.99955 * 160.02471 * 6 4 2 8 8 C 1.50700 * 109.46942 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00282 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00075 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00173 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99666 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00001 * 180.27893 * 11 10 8 14 14 N 1.31414 * 119.99893 * 359.72318 * 13 11 10 15 15 Si 1.86801 * 119.99957 * 179.72309 * 13 11 10 16 16 H 1.48501 * 109.46896 * 89.99808 * 15 13 11 17 17 H 1.48504 * 109.46757 * 209.99794 * 15 13 11 18 18 H 1.48492 * 109.47185 * 329.99590 * 15 13 11 19 19 C 1.55160 * 102.94566 * 141.60972 * 4 2 1 20 20 C 1.54916 * 101.57778 * 324.49415 * 19 4 2 21 21 N 1.47030 * 109.88049 * 238.90268 * 2 1 3 22 22 C 1.34775 * 125.64462 * 61.61154 * 21 2 1 23 23 O 1.21282 * 119.99958 * 0.02562 * 22 21 2 24 24 C 1.50701 * 119.99875 * 180.02562 * 22 21 2 25 25 O 1.42905 * 109.47060 * 179.97438 * 24 22 21 26 26 C 1.42902 * 113.99861 * 179.97438 * 25 24 22 27 27 C 1.52997 * 109.46927 * 179.97438 * 26 25 24 28 28 C 1.52997 * 117.50154 * 243.74690 * 27 26 25 29 29 C 1.52999 * 117.49814 * 175.08323 * 27 26 25 30 30 H 1.09000 * 109.46732 * 298.90011 * 1 2 3 31 31 H 1.09000 * 109.47073 * 58.89931 * 1 2 3 32 32 H 1.09003 * 109.46974 * 178.90497 * 1 2 3 33 33 H 1.00907 * 111.00029 * 283.97983 * 6 4 2 34 34 H 1.08994 * 109.47346 * 60.00149 * 7 6 4 35 35 H 1.08998 * 109.47279 * 299.99821 * 7 6 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 10 8 7 37 37 H 0.97004 * 119.99542 * 180.02562 * 14 13 11 38 38 H 1.08996 * 111.00715 * 82.56520 * 19 4 2 39 39 H 1.09000 * 111.00212 * 206.42475 * 19 4 2 40 40 H 1.09001 * 110.36370 * 155.84825 * 20 19 4 41 41 H 1.08997 * 110.36698 * 278.06430 * 20 19 4 42 42 H 1.09004 * 109.46779 * 299.99192 * 24 22 21 43 43 H 1.09000 * 109.47068 * 59.99451 * 24 22 21 44 44 H 1.08999 * 109.46993 * 299.99596 * 26 25 24 45 45 H 1.09000 * 109.47093 * 59.99707 * 26 25 24 46 46 H 1.09000 * 115.55092 * 29.41852 * 27 26 25 47 47 H 1.09007 * 117.49407 * 359.97438 * 28 27 26 48 48 H 1.08994 * 117.50497 * 145.02161 * 28 27 26 49 49 H 1.08997 * 117.50205 * 214.97902 * 29 27 26 50 50 H 1.09002 * 117.49730 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0548 -0.7497 1.2426 5 1 1.3065 -1.4459 1.6210 6 7 2.4566 0.1985 2.2903 7 6 2.5021 -0.4570 3.6042 8 6 2.9176 0.5444 4.6509 9 8 3.1532 1.6911 4.3336 10 7 3.0274 0.1657 5.9398 11 6 3.4049 1.0769 6.8922 12 1 3.6147 2.0979 6.6095 13 6 3.5238 0.6851 8.2199 14 7 3.2691 -0.5575 8.5637 15 14 4.0457 1.9246 9.5164 16 1 2.8424 2.5887 10.0789 17 1 4.7789 1.2259 10.6024 18 1 4.9305 2.9444 8.8983 19 6 3.2876 -1.5144 0.6923 20 6 2.8144 -1.8795 -0.7369 21 7 2.0300 -0.7141 -1.1840 22 6 1.8074 -0.3620 -2.4657 23 8 1.1437 0.6212 -2.7180 24 6 2.3832 -1.1901 -3.5855 25 8 2.0105 -0.6183 -4.8410 26 6 2.5088 -1.3309 -5.9750 27 6 2.0504 -0.6335 -7.2573 28 6 1.1179 -1.4100 -8.1892 29 6 2.5783 -1.1792 -8.5857 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 3.3428 0.6275 2.0693 34 1 3.2225 -1.2744 3.5777 35 1 1.5153 -0.8501 3.8484 36 1 2.8394 -0.7514 6.1935 37 1 3.3517 -0.8309 9.4907 38 1 4.1654 -0.8690 0.6602 39 1 3.4851 -2.4112 1.2795 40 1 3.6716 -2.0339 -1.3924 41 1 2.1901 -2.7726 -0.7132 42 1 3.4699 -1.2080 -3.5023 43 1 1.9969 -2.2073 -3.5209 44 1 3.5981 -1.3511 -5.9415 45 1 2.1259 -2.3513 -5.9599 46 1 1.9014 0.4434 -7.1793 47 1 0.8313 -2.4179 -7.8888 48 1 0.3556 -0.8439 -8.7245 49 1 2.7761 -0.4614 -9.3816 50 1 3.2525 -2.0348 -8.5459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331862385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:04 Heat of formation + Delta-G solvation = -83.029143 kcal Electronic energy + Delta-G solvation = -28763.012551 eV Core-core repulsion = 24598.335446 eV Total energy + Delta-G solvation = -4164.677105 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.53769 -38.97940 -38.34412 -37.71331 -36.64647 -34.78777 -33.81928 -31.75377 -31.27262 -30.85561 -28.89645 -27.03010 -26.46030 -24.97701 -23.55592 -22.98777 -22.83711 -21.26574 -20.99503 -19.45214 -19.02268 -17.92479 -17.72462 -16.98539 -16.78942 -16.53473 -15.94714 -15.73083 -15.26681 -15.15248 -14.58393 -14.50875 -14.44683 -14.00745 -13.90337 -13.69923 -13.47993 -13.37489 -12.87997 -12.73149 -12.66033 -12.46797 -12.21006 -12.01862 -11.98563 -11.68936 -11.59468 -11.55877 -11.48450 -11.14106 -11.02392 -10.91944 -10.86135 -10.74542 -10.40589 -10.23556 -9.99076 -9.86535 -9.52800 -8.85795 -8.50727 -8.11579 -7.98137 -6.43783 -3.84561 2.33922 2.42075 3.16987 3.20744 3.25858 3.31670 3.50370 3.87740 3.98649 4.13399 4.20866 4.32392 4.38194 4.41144 4.59170 4.64170 4.66775 4.74985 4.81241 4.85408 4.98093 4.99096 5.06263 5.14334 5.15002 5.17406 5.20373 5.24931 5.40234 5.42519 5.48643 5.58923 5.63501 5.69877 5.73863 5.76539 5.81216 5.93134 6.05619 6.21554 6.23256 6.30043 6.66991 7.12725 7.28964 7.53600 7.54992 7.99578 8.04198 8.58874 9.16031 9.51819 10.03153 10.73866 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.001538 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.578860 B =18205.636681 C =18300.632542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.088 0.912 4 C 0.084 3.916 5 H 0.097 0.903 6 N -0.657 5.657 7 C 0.053 3.947 8 C 0.439 3.561 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.300 4.300 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.270 1.270 19 C -0.170 4.170 20 C 0.100 3.900 21 N -0.616 5.616 22 C 0.530 3.470 23 O -0.514 6.514 24 C 0.050 3.950 25 O -0.360 6.360 26 C 0.092 3.908 27 C -0.154 4.154 28 C -0.177 4.177 29 C -0.173 4.173 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.116 0.884 47 H 0.095 0.905 48 H 0.097 0.903 49 H 0.099 0.901 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 -11.160 -27.331 29.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.042 3.958 3 H 0.106 0.894 4 C -0.028 4.028 5 H 0.115 0.885 6 N -0.288 5.288 7 C -0.080 4.080 8 C 0.225 3.775 9 O -0.466 6.466 10 N -0.199 5.199 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.757 3.243 16 H -0.204 1.204 17 H -0.209 1.209 18 H -0.194 1.194 19 C -0.209 4.209 20 C -0.023 4.023 21 N -0.353 5.353 22 C 0.317 3.683 23 O -0.388 6.388 24 C -0.030 4.030 25 O -0.278 6.278 26 C 0.016 3.984 27 C -0.172 4.172 28 C -0.214 4.214 29 C -0.210 4.210 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.174 0.826 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.113 0.887 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.596 -9.472 -27.491 29.121 hybrid contribution 1.189 -1.012 0.882 1.793 sum -0.407 -10.484 -26.609 28.603 Atomic orbital electron populations 1.22067 0.94208 1.01798 1.03405 1.21521 0.94879 0.96862 0.82537 0.89443 1.22693 0.96189 0.92733 0.91162 0.88531 1.59950 1.38480 1.30352 1.00035 1.21680 1.01532 0.95504 0.89261 1.19790 0.84920 0.89256 0.83562 1.90539 1.55189 1.20029 1.80880 1.41854 1.59856 1.12781 1.05458 1.19712 1.42393 0.94066 0.86778 0.87903 1.25252 0.97506 0.96864 0.98229 1.69612 1.49265 1.16286 1.19146 0.85859 0.78774 0.79925 0.79753 1.20360 1.20941 1.19422 1.23617 0.99638 1.02292 0.95396 1.22307 0.95103 0.88859 0.96078 1.48520 1.53072 1.28862 1.04876 1.19779 0.81071 0.85543 0.81935 1.90743 1.38513 1.26758 1.82771 1.22156 0.99827 0.96610 0.84388 1.88013 1.75486 1.52246 1.12072 1.22072 0.97613 0.94320 0.84435 1.22115 1.04940 1.00641 0.89499 1.23091 0.93348 1.01551 1.03378 1.22994 0.97229 1.03416 0.97392 0.90751 0.91469 0.93008 0.82598 0.93675 0.89457 0.77473 0.91876 0.90061 0.89457 0.90690 0.90958 0.90348 0.90391 0.92624 0.92973 0.86571 0.88655 0.88479 0.88294 0.88643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 9.10 37.16 0.34 -1.60 16 2 C 0.14 1.78 3.21 -66.95 -0.22 1.56 16 3 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 4 C 0.08 0.94 2.76 -65.87 -0.18 0.76 16 5 H 0.10 1.01 7.61 -51.93 -0.40 0.61 16 6 N -0.66 -9.85 5.91 -106.06 -0.63 -10.48 16 7 C 0.05 0.86 6.02 -4.98 -0.03 0.83 16 8 C 0.44 10.06 7.82 -10.98 -0.09 9.97 16 9 O -0.58 -15.57 15.78 5.55 0.09 -15.48 16 10 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 11 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 12 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 13 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 14 N -0.90 -24.16 13.05 55.50 0.72 -23.44 16 15 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 16 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 C -0.17 -1.44 6.63 -24.58 -0.16 -1.60 16 20 C 0.10 0.72 6.69 -2.53 -0.02 0.70 16 21 N -0.62 -6.55 3.06 -163.01 -0.50 -7.05 16 22 C 0.53 6.55 7.72 -10.99 -0.08 6.47 16 23 O -0.51 -8.70 15.55 -14.35 -0.22 -8.92 16 24 C 0.05 0.44 5.42 36.01 0.20 0.63 16 25 O -0.36 -3.96 9.88 -55.14 -0.54 -4.50 16 26 C 0.09 0.68 6.22 37.16 0.23 0.91 16 27 C -0.15 -1.13 6.05 -90.62 -0.55 -1.68 16 28 C -0.18 -1.06 10.18 -26.69 -0.27 -1.34 16 29 C -0.17 -0.92 10.25 -26.69 -0.27 -1.19 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.95 6.90 -51.93 -0.36 0.59 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.35 5.56 8.00 -39.29 -0.31 5.25 16 34 H 0.05 0.64 8.13 -51.93 -0.42 0.22 16 35 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 36 H 0.39 9.22 7.90 -40.82 -0.32 8.89 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.39 7.48 -51.93 -0.39 0.00 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.50 7.85 -51.93 -0.41 0.09 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.05 0.31 7.87 -51.93 -0.41 -0.10 16 46 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.10 0.51 8.03 -51.93 -0.42 0.09 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 413.24 15.07 6.23 6.23 Total: -1.00 -34.38 413.24 -9.70 -44.08 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: -8.42 Total: 11.18 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -1.35 Total: 6.52 kcal Atomic # 7 Polarization: -54.49 SS G_CDS: -0.46 Total: -54.95 kcal Atomic # 8 Polarization: -28.23 SS G_CDS: -0.68 Total: -28.91 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.38 -9.70 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331862385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.952 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds