Wall clock time and date at job start Sat Apr 11 2020 05:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 110.00283 * 2 1 4 4 C 1.54323 * 109.88253 * 121.10198 * 2 1 3 5 5 H 1.08995 * 110.87570 * 23.17063 * 4 2 1 6 6 N 1.46903 * 110.71706 * 259.97056 * 4 2 1 7 7 C 1.46896 * 110.99955 * 160.02471 * 6 4 2 8 8 C 1.50700 * 109.46942 * 179.97438 * 7 6 4 9 9 O 1.21293 * 120.00282 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00075 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00173 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99666 * 359.97438 * 11 10 8 13 13 C 1.38945 * 120.00001 * 180.27893 * 11 10 8 14 14 N 1.31414 * 119.99893 * 359.72318 * 13 11 10 15 15 Si 1.86801 * 119.99957 * 179.72309 * 13 11 10 16 16 H 1.48501 * 109.46896 * 89.99808 * 15 13 11 17 17 H 1.48504 * 109.46757 * 209.99794 * 15 13 11 18 18 H 1.48492 * 109.47185 * 329.99590 * 15 13 11 19 19 C 1.55160 * 102.94566 * 141.60972 * 4 2 1 20 20 C 1.54916 * 101.57778 * 324.49415 * 19 4 2 21 21 N 1.47030 * 109.88049 * 238.90268 * 2 1 3 22 22 C 1.34775 * 125.64462 * 61.61154 * 21 2 1 23 23 O 1.21282 * 119.99958 * 0.02562 * 22 21 2 24 24 C 1.50701 * 119.99875 * 180.02562 * 22 21 2 25 25 O 1.42905 * 109.47060 * 179.97438 * 24 22 21 26 26 C 1.42902 * 113.99861 * 179.97438 * 25 24 22 27 27 C 1.52997 * 109.46927 * 179.97438 * 26 25 24 28 28 C 1.52997 * 117.50154 * 243.74690 * 27 26 25 29 29 C 1.52999 * 117.49814 * 175.08323 * 27 26 25 30 30 H 1.09000 * 109.46732 * 298.90011 * 1 2 3 31 31 H 1.09000 * 109.47073 * 58.89931 * 1 2 3 32 32 H 1.09003 * 109.46974 * 178.90497 * 1 2 3 33 33 H 1.00907 * 111.00029 * 283.97983 * 6 4 2 34 34 H 1.08994 * 109.47346 * 60.00149 * 7 6 4 35 35 H 1.08998 * 109.47279 * 299.99821 * 7 6 4 36 36 H 0.97000 * 120.00140 * 0.02562 * 10 8 7 37 37 H 0.97004 * 119.99542 * 180.02562 * 14 13 11 38 38 H 1.08996 * 111.00715 * 82.56520 * 19 4 2 39 39 H 1.09000 * 111.00212 * 206.42475 * 19 4 2 40 40 H 1.09001 * 110.36370 * 155.84825 * 20 19 4 41 41 H 1.08997 * 110.36698 * 278.06430 * 20 19 4 42 42 H 1.09004 * 109.46779 * 299.99192 * 24 22 21 43 43 H 1.09000 * 109.47068 * 59.99451 * 24 22 21 44 44 H 1.08999 * 109.46993 * 299.99596 * 26 25 24 45 45 H 1.09000 * 109.47093 * 59.99707 * 26 25 24 46 46 H 1.09000 * 115.55092 * 29.41852 * 27 26 25 47 47 H 1.09007 * 117.49407 * 359.97438 * 28 27 26 48 48 H 1.08994 * 117.50497 * 145.02161 * 28 27 26 49 49 H 1.08997 * 117.50205 * 214.97902 * 29 27 26 50 50 H 1.09002 * 117.49730 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9029 1.0243 0.0000 4 6 2.0548 -0.7497 1.2426 5 1 1.3065 -1.4459 1.6210 6 7 2.4566 0.1985 2.2903 7 6 2.5021 -0.4570 3.6042 8 6 2.9176 0.5444 4.6509 9 8 3.1532 1.6911 4.3336 10 7 3.0274 0.1657 5.9398 11 6 3.4049 1.0769 6.8922 12 1 3.6147 2.0979 6.6095 13 6 3.5238 0.6851 8.2199 14 7 3.2691 -0.5575 8.5637 15 14 4.0457 1.9246 9.5164 16 1 2.8424 2.5887 10.0789 17 1 4.7789 1.2259 10.6024 18 1 4.9305 2.9444 8.8983 19 6 3.2876 -1.5144 0.6923 20 6 2.8144 -1.8795 -0.7369 21 7 2.0300 -0.7141 -1.1840 22 6 1.8074 -0.3620 -2.4657 23 8 1.1437 0.6212 -2.7180 24 6 2.3832 -1.1901 -3.5855 25 8 2.0105 -0.6183 -4.8410 26 6 2.5088 -1.3309 -5.9750 27 6 2.0504 -0.6335 -7.2573 28 6 1.1179 -1.4100 -8.1892 29 6 2.5783 -1.1792 -8.5857 30 1 -0.3633 0.4967 0.8997 31 1 -0.3633 0.5308 -0.8800 32 1 -0.3633 -1.0275 -0.0196 33 1 3.3428 0.6275 2.0693 34 1 3.2225 -1.2744 3.5777 35 1 1.5153 -0.8501 3.8484 36 1 2.8394 -0.7514 6.1935 37 1 3.3517 -0.8309 9.4907 38 1 4.1654 -0.8690 0.6602 39 1 3.4851 -2.4112 1.2795 40 1 3.6716 -2.0339 -1.3924 41 1 2.1901 -2.7726 -0.7132 42 1 3.4699 -1.2080 -3.5023 43 1 1.9969 -2.2073 -3.5209 44 1 3.5981 -1.3511 -5.9415 45 1 2.1259 -2.3513 -5.9599 46 1 1.9014 0.4434 -7.1793 47 1 0.8313 -2.4179 -7.8888 48 1 0.3556 -0.8439 -8.7245 49 1 2.7761 -0.4614 -9.3816 50 1 3.2525 -2.0348 -8.5459 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331862385.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:03 Heat of formation + Delta-G solvation = -107.726853 kcal Electronic energy + Delta-G solvation = -28764.083524 eV Core-core repulsion = 24598.335446 eV Total energy + Delta-G solvation = -4165.748078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.41785 -40.17181 -39.50682 -38.68785 -37.28158 -36.19346 -35.55096 -33.26483 -32.65585 -31.80197 -29.60188 -28.36637 -27.11308 -26.47805 -24.85981 -23.77286 -23.25820 -21.98402 -21.69209 -21.10164 -20.05411 -19.83563 -18.48082 -17.92929 -17.66978 -17.33305 -17.21764 -16.72838 -16.39009 -16.29123 -15.91183 -15.81473 -15.31068 -15.27446 -14.99385 -14.84712 -14.41588 -14.21044 -14.07973 -13.75497 -13.54797 -13.46893 -13.37797 -13.20584 -13.09048 -12.91994 -12.67170 -12.54566 -12.40693 -12.39511 -12.11995 -12.09276 -11.99261 -11.72813 -11.49775 -11.38872 -11.27674 -10.83176 -10.52439 -10.33259 -9.99752 -9.73143 -9.28078 -8.45815 -5.94030 1.38513 1.42679 1.53315 1.54513 1.58023 2.07608 2.30039 2.64976 2.91088 2.99336 3.21943 3.38253 3.46501 3.62540 3.84511 3.91379 3.95780 4.02678 4.10658 4.14703 4.22095 4.23316 4.30200 4.33731 4.35682 4.42267 4.50127 4.52970 4.58672 4.65573 4.69429 4.71773 4.75971 4.77451 5.00871 5.03875 5.04295 5.12246 5.20399 5.23633 5.24036 5.33031 5.42355 5.91075 6.09192 6.12189 6.35403 6.48402 6.62082 7.11453 7.14528 7.58453 8.14454 8.71364 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.039340 B = 0.001538 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.578860 B =18205.636681 C =18300.632542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.143 3.857 3 H 0.051 0.949 4 C 0.089 3.911 5 H 0.113 0.887 6 N -0.677 5.677 7 C 0.071 3.929 8 C 0.435 3.565 9 O -0.627 6.627 10 N -0.572 5.572 11 C -0.335 4.335 12 H 0.076 0.924 13 C -0.009 4.009 14 N -0.918 5.918 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.275 1.275 19 C -0.162 4.162 20 C 0.099 3.901 21 N -0.612 5.612 22 C 0.519 3.481 23 O -0.575 6.575 24 C 0.055 3.945 25 O -0.399 6.399 26 C 0.091 3.909 27 C -0.178 4.178 28 C -0.180 4.180 29 C -0.157 4.157 30 H 0.065 0.935 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.346 0.654 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.398 0.602 37 H 0.278 0.722 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.105 0.895 48 H 0.094 0.906 49 H 0.103 0.897 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.323 -14.496 -27.869 31.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.039 3.961 3 H 0.069 0.931 4 C -0.022 4.022 5 H 0.131 0.869 6 N -0.308 5.308 7 C -0.061 4.061 8 C 0.223 3.777 9 O -0.513 6.513 10 N -0.209 5.209 11 C -0.465 4.465 12 H 0.094 0.906 13 C -0.209 4.209 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.199 1.199 19 C -0.202 4.202 20 C -0.023 4.023 21 N -0.348 5.348 22 C 0.308 3.692 23 O -0.454 6.454 24 C -0.024 4.024 25 O -0.319 6.319 26 C 0.016 3.984 27 C -0.197 4.197 28 C -0.217 4.217 29 C -0.194 4.194 30 H 0.084 0.916 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.166 0.834 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.129 0.871 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.111 0.889 47 H 0.123 0.877 48 H 0.113 0.887 49 H 0.121 0.879 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.619 -12.881 -28.027 30.852 hybrid contribution 0.867 0.058 0.991 1.318 sum 0.248 -12.823 -27.036 29.924 Atomic orbital electron populations 1.21969 0.94534 1.02455 1.01732 1.21367 0.94648 0.95772 0.84290 0.93055 1.22679 0.97960 0.92155 0.89423 0.86879 1.59873 1.38319 1.32117 1.00531 1.21519 1.03110 0.93908 0.87589 1.20983 0.82817 0.89871 0.84027 1.90510 1.56615 1.22559 1.81657 1.41905 1.60453 1.12610 1.05936 1.19647 1.44670 0.93819 0.88345 0.90572 1.25964 0.96928 0.98649 0.99406 1.69661 1.49112 1.17224 1.19893 0.84978 0.78455 0.77785 0.77430 1.19828 1.19409 1.19943 1.23580 0.97697 1.02510 0.96402 1.22621 0.96148 0.88001 0.95515 1.48570 1.52712 1.29489 1.03987 1.20637 0.80261 0.85158 0.83094 1.90713 1.41396 1.29537 1.83763 1.22272 1.01183 0.96742 0.82206 1.87976 1.76423 1.53932 1.13551 1.22233 0.98498 0.94679 0.83034 1.22146 1.07001 0.99675 0.90844 1.23178 0.93866 1.01727 1.02912 1.23081 0.96853 1.03592 0.95891 0.91623 0.93957 0.91027 0.83448 0.90471 0.87499 0.76826 0.91302 0.90923 0.87067 0.87782 0.88203 0.87518 0.87086 0.91105 0.91126 0.88947 0.87696 0.88716 0.87855 0.86990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.10 71.98 0.65 -3.08 16 2 C 0.14 3.50 3.21 45.34 0.15 3.64 16 3 H 0.05 1.62 8.03 -2.39 -0.02 1.60 16 4 C 0.09 1.80 2.76 46.10 0.13 1.93 16 5 H 0.11 1.97 7.61 -2.39 -0.02 1.95 16 6 N -0.68 -19.83 5.91 -489.46 -2.89 -22.73 16 7 C 0.07 2.19 6.02 85.56 0.52 2.70 16 8 C 0.44 20.05 7.82 87.66 0.69 20.74 16 9 O -0.63 -34.55 15.78 -3.07 -0.05 -34.60 16 10 N -0.57 -28.53 5.29 -306.98 -1.62 -30.15 16 11 C -0.34 -18.87 9.68 84.04 0.81 -18.05 16 12 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 13 C -0.01 -0.50 5.50 84.92 0.47 -0.03 16 14 N -0.92 -48.55 13.05 21.66 0.28 -48.26 16 15 Si 0.99 42.64 29.55 68.60 2.03 44.67 16 16 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 17 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C -0.16 -2.18 6.63 31.99 0.21 -1.97 16 20 C 0.10 1.00 6.69 86.86 0.58 1.58 16 21 N -0.61 -12.07 3.06 -788.04 -2.42 -14.49 16 22 C 0.52 12.59 7.72 87.66 0.68 13.26 16 23 O -0.58 -20.54 15.55 16.00 0.25 -20.29 16 24 C 0.05 0.82 5.42 71.24 0.39 1.21 16 25 O -0.40 -8.50 9.88 -129.94 -1.28 -9.78 16 26 C 0.09 1.18 6.22 71.98 0.45 1.63 16 27 C -0.18 -2.54 6.05 -10.80 -0.07 -2.61 16 28 C -0.18 -1.99 10.18 30.62 0.31 -1.68 16 29 C -0.16 -1.41 10.25 30.62 0.31 -1.10 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.26 6.90 -2.39 -0.02 1.25 16 32 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.35 10.95 8.00 -89.69 -0.72 10.24 16 34 H 0.08 1.93 8.13 -2.39 -0.02 1.91 16 35 H 0.11 2.93 8.08 -2.39 -0.02 2.92 16 36 H 0.40 18.58 7.90 -92.71 -0.73 17.85 16 37 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 38 H 0.07 1.14 7.81 -2.39 -0.02 1.12 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.10 0.53 7.48 -2.39 -0.02 0.51 16 41 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.11 0.97 7.85 -2.39 -0.02 0.95 16 43 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 44 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.62 7.87 -2.39 -0.02 0.61 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.10 0.94 8.03 -2.38 -0.02 0.92 16 48 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -79.97 413.24 0.07 -79.90 By element: Atomic # 1 Polarization: 38.05 SS G_CDS: -0.50 Total: 37.55 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 6.27 Total: 18.18 kcal Atomic # 7 Polarization: -108.98 SS G_CDS: -6.65 Total: -115.63 kcal Atomic # 8 Polarization: -63.58 SS G_CDS: -1.08 Total: -64.67 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -79.97 0.07 -79.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331862385.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.831 kcal (2) G-P(sol) polarization free energy of solvation -79.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds