Wall clock time and date at job start Sat Apr 11 2020 05:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.00187 * 2 1 4 4 C 1.54320 * 109.88289 * 238.90125 * 2 1 3 5 5 H 1.08996 * 110.87489 * 336.82700 * 4 2 1 6 6 N 1.46906 * 110.71806 * 100.02935 * 4 2 1 7 7 C 1.46901 * 110.99793 * 199.97845 * 6 4 2 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47117 * 59.99412 * 15 13 11 17 17 H 1.48498 * 109.47600 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46756 * 300.00019 * 15 13 11 19 19 C 1.55156 * 102.94383 * 218.39354 * 4 2 1 20 20 C 1.54906 * 101.58293 * 35.50064 * 19 4 2 21 21 N 1.47027 * 109.88033 * 121.09573 * 2 1 3 22 22 C 1.34776 * 125.65026 * 298.32227 * 21 2 1 23 23 O 1.21289 * 119.99812 * 0.02562 * 22 21 2 24 24 C 1.50696 * 120.00366 * 180.02562 * 22 21 2 25 25 O 1.42894 * 109.47538 * 179.97438 * 24 22 21 26 26 C 1.42898 * 114.00288 * 179.97438 * 25 24 22 27 27 C 1.53007 * 109.47302 * 179.97438 * 26 25 24 28 28 C 1.52993 * 117.50059 * 243.74997 * 27 26 25 29 29 C 1.52997 * 117.49840 * 175.08742 * 27 26 25 30 30 H 1.08995 * 109.47397 * 181.09653 * 1 2 3 31 31 H 1.09008 * 109.47111 * 301.09678 * 1 2 3 32 32 H 1.09001 * 109.47377 * 61.09205 * 1 2 3 33 33 H 1.00898 * 110.99995 * 323.92922 * 6 4 2 34 34 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 35 35 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 36 36 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 37 37 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 38 38 H 1.09002 * 111.00529 * 153.57994 * 19 4 2 39 39 H 1.09004 * 111.00377 * 277.39104 * 19 4 2 40 40 H 1.09001 * 110.36419 * 81.83162 * 20 19 4 41 41 H 1.09003 * 110.36721 * 204.15245 * 20 19 4 42 42 H 1.09002 * 109.46892 * 300.00458 * 24 22 21 43 43 H 1.09007 * 109.46616 * 59.99888 * 24 22 21 44 44 H 1.09003 * 109.47313 * 300.00185 * 26 25 24 45 45 H 1.09002 * 109.47117 * 60.00544 * 26 25 24 46 46 H 1.09000 * 115.54251 * 29.41929 * 27 26 25 47 47 H 1.09001 * 117.49759 * 359.97438 * 28 27 26 48 48 H 1.08993 * 117.50143 * 145.02159 * 28 27 26 49 49 H 1.08997 * 117.49742 * 214.98345 * 29 27 26 50 50 H 1.09004 * 117.49861 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 1.3065 -1.4458 -1.6210 6 7 2.4566 0.1986 -2.2903 7 6 2.5020 -0.4568 -3.6042 8 6 2.9163 0.5449 -4.6512 9 8 3.1511 1.6918 -4.3339 10 7 3.0268 0.1660 -5.9399 11 6 3.4043 1.0772 -6.8922 12 1 3.6126 2.0986 -6.6098 13 6 3.5177 0.6868 -8.2208 14 7 3.2638 -0.5560 -8.5646 15 14 4.0327 1.9280 -9.5184 16 1 5.3773 2.4631 -9.1856 17 1 4.0789 1.2654 -10.8466 18 1 3.0516 3.0422 -9.5544 19 6 3.2875 -1.5143 -0.6923 20 6 2.8144 -1.8794 0.7369 21 7 2.0299 -0.7141 1.1840 22 6 1.8084 -0.3613 2.4657 23 8 1.1450 0.6222 2.7181 24 6 2.3850 -1.1888 3.5855 25 8 2.0145 -0.6157 4.8409 26 6 2.5128 -1.3283 5.9749 27 6 2.0577 -0.6287 7.2573 28 6 3.1408 -0.0382 8.1623 29 6 2.3937 -1.3046 8.5881 30 1 -0.3634 -1.0274 0.0197 31 1 -0.3634 0.5308 0.8800 32 1 -0.3634 0.4968 -0.8996 33 1 1.8438 1.0000 -2.3070 34 1 1.5151 -0.8500 -3.8485 35 1 3.2225 -1.2743 -3.5777 36 1 2.8394 -0.7513 -6.1935 37 1 3.3434 -0.8286 -9.4921 38 1 3.4851 -2.4111 -1.2795 39 1 4.1655 -0.8691 -0.6609 40 1 2.1885 -2.7715 0.7129 41 1 3.6715 -2.0339 1.3923 42 1 1.9986 -2.2060 3.5217 43 1 3.4717 -1.2070 3.5013 44 1 2.1283 -2.3482 5.9609 45 1 3.6021 -1.3502 5.9404 46 1 1.1110 -0.0929 7.1897 47 1 4.1775 -0.1485 7.8444 48 1 2.9064 0.8858 8.6907 49 1 1.6681 -1.2131 9.3963 50 1 2.9393 -2.2476 8.5501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331862386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:10 Heat of formation + Delta-G solvation = -82.700465 kcal Electronic energy + Delta-G solvation = -28764.390929 eV Core-core repulsion = 24599.728077 eV Total energy + Delta-G solvation = -4164.662852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.53720 -38.96285 -38.33156 -37.70270 -36.63986 -34.78794 -33.81485 -31.79443 -31.26196 -30.90858 -28.90143 -27.03254 -26.47210 -25.02479 -23.68139 -22.96529 -22.82459 -21.21892 -20.68193 -19.54044 -18.99470 -17.90264 -17.68956 -16.99874 -16.84254 -16.34417 -16.07240 -15.89456 -15.31460 -14.93986 -14.88060 -14.52507 -14.38318 -14.00547 -13.90032 -13.73175 -13.41178 -13.33539 -13.08657 -12.82036 -12.68145 -12.39342 -12.21425 -11.99390 -11.83954 -11.77263 -11.56356 -11.55335 -11.42416 -11.14010 -10.99157 -10.91292 -10.77519 -10.71993 -10.45083 -10.22714 -9.98503 -9.88115 -9.51515 -8.87817 -8.50476 -8.16172 -7.97960 -6.43231 -3.84134 2.32504 2.40675 3.19500 3.20790 3.25323 3.29874 3.50624 3.88478 4.02476 4.10246 4.26653 4.35895 4.39336 4.41556 4.53944 4.64092 4.67843 4.75427 4.83090 4.92977 4.96120 4.99689 5.07348 5.15199 5.18041 5.18854 5.21385 5.27022 5.32133 5.42376 5.43715 5.54734 5.64414 5.72198 5.74024 5.79403 5.90050 5.94727 6.02493 6.10479 6.17412 6.25855 6.66935 7.13924 7.26793 7.53768 7.55084 7.97560 8.04363 8.59374 9.16303 9.52207 10.03632 10.74334 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035483 B = 0.001545 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.920279 B =18114.555965 C =18158.454494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 H 0.089 0.911 4 C 0.078 3.922 5 H 0.061 0.939 6 N -0.657 5.657 7 C 0.052 3.948 8 C 0.440 3.560 9 O -0.582 6.582 10 N -0.563 5.563 11 C -0.301 4.301 12 H 0.103 0.897 13 C 0.023 3.977 14 N -0.902 5.902 15 Si 0.931 3.069 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.274 1.274 19 C -0.125 4.125 20 C 0.096 3.904 21 N -0.612 5.612 22 C 0.530 3.470 23 O -0.516 6.516 24 C 0.051 3.949 25 O -0.360 6.360 26 C 0.092 3.908 27 C -0.154 4.154 28 C -0.177 4.177 29 C -0.173 4.173 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.353 0.647 34 H 0.045 0.955 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.116 0.884 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.098 0.902 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -10.447 27.201 29.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.034 3.966 3 H 0.107 0.893 4 C -0.033 4.033 5 H 0.079 0.921 6 N -0.290 5.290 7 C -0.081 4.081 8 C 0.225 3.775 9 O -0.466 6.466 10 N -0.199 5.199 11 C -0.430 4.430 12 H 0.120 0.880 13 C -0.178 4.178 14 N -0.543 5.543 15 Si 0.758 3.242 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.163 4.163 20 C -0.027 4.027 21 N -0.349 5.349 22 C 0.317 3.683 23 O -0.390 6.390 24 C -0.029 4.029 25 O -0.279 6.279 26 C 0.016 3.984 27 C -0.172 4.172 28 C -0.214 4.214 29 C -0.210 4.210 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.174 0.826 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.074 0.926 45 H 0.071 0.929 46 H 0.134 0.866 47 H 0.114 0.886 48 H 0.115 0.885 49 H 0.117 0.883 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.578 -9.099 27.580 29.085 hybrid contribution -0.555 -0.542 -1.187 1.418 sum -2.134 -9.641 26.393 28.180 Atomic orbital electron populations 1.22173 0.94537 1.02237 1.03315 1.21646 0.94280 0.97230 0.83433 0.89257 1.22612 0.95711 0.93976 0.90994 0.92081 1.60154 1.57434 1.08548 1.02860 1.21710 1.00343 0.97140 0.88880 1.19779 0.85108 0.89227 0.83384 1.90537 1.55198 1.20130 1.80770 1.41845 1.59860 1.12780 1.05439 1.19663 1.42587 0.94062 0.86704 0.87954 1.25250 0.97468 0.96885 0.98221 1.69603 1.49191 1.16307 1.19222 0.85919 0.79360 0.79901 0.79055 1.19877 1.20973 1.19902 1.22885 0.99024 1.00952 0.93456 1.22443 0.95052 0.88550 0.96659 1.48401 1.53045 1.28862 1.04575 1.19803 0.81012 0.85511 0.81944 1.90738 1.38686 1.26778 1.82816 1.22144 0.99932 0.96552 0.84311 1.88006 1.75539 1.52227 1.12084 1.22076 0.97432 0.94532 0.84402 1.22112 1.01195 1.04200 0.89696 1.23093 0.97244 0.97572 1.03445 1.22994 1.03751 0.97137 0.97158 0.92571 0.90968 0.91425 0.82635 0.93693 0.89502 0.77470 0.91821 0.89785 0.89067 0.91100 0.90464 0.90319 0.90248 0.92643 0.92911 0.86613 0.88604 0.88474 0.88315 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.10 37.16 0.34 -1.55 16 2 C 0.14 1.64 2.98 -66.95 -0.20 1.44 16 3 H 0.09 1.26 7.97 -51.93 -0.41 0.85 16 4 C 0.08 0.89 2.76 -65.88 -0.18 0.71 16 5 H 0.06 0.65 7.61 -51.93 -0.40 0.25 16 6 N -0.66 -10.00 5.93 -106.05 -0.63 -10.62 16 7 C 0.05 0.86 6.02 -4.97 -0.03 0.83 16 8 C 0.44 10.12 7.82 -10.98 -0.09 10.04 16 9 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 10 N -0.56 -13.98 5.29 -10.96 -0.06 -14.04 16 11 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 12 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 13 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 14 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 15 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.12 -1.18 6.71 -24.58 -0.16 -1.34 16 20 C 0.10 0.72 6.69 -2.53 -0.02 0.70 16 21 N -0.61 -6.57 3.06 -163.02 -0.50 -7.07 16 22 C 0.53 6.55 7.72 -10.99 -0.08 6.46 16 23 O -0.52 -8.64 15.55 -14.36 -0.22 -8.87 16 24 C 0.05 0.44 5.42 36.00 0.20 0.64 16 25 O -0.36 -3.96 9.88 -55.14 -0.54 -4.51 16 26 C 0.09 0.68 6.22 37.16 0.23 0.91 16 27 C -0.15 -1.13 6.05 -90.62 -0.55 -1.68 16 28 C -0.18 -1.09 10.18 -26.70 -0.27 -1.36 16 29 C -0.17 -0.92 10.25 -26.69 -0.27 -1.19 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.96 6.91 -51.92 -0.36 0.60 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.35 5.70 8.15 -39.29 -0.32 5.38 16 34 H 0.05 0.67 8.09 -51.93 -0.42 0.25 16 35 H 0.09 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.39 9.26 7.90 -40.82 -0.32 8.94 16 37 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.42 7.48 -51.93 -0.39 0.04 16 42 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.52 7.85 -51.93 -0.41 0.11 16 44 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 46 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.10 0.54 8.03 -51.93 -0.42 0.12 16 48 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 413.54 15.07 6.23 6.23 Total: -1.00 -34.37 413.54 -9.70 -44.08 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -8.43 Total: 11.24 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -1.33 Total: 6.69 kcal Atomic # 7 Polarization: -54.75 SS G_CDS: -0.46 Total: -55.21 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -0.68 Total: -28.90 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.37 -9.70 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331862386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.624 kcal (2) G-P(sol) polarization free energy of solvation -34.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds