Wall clock time and date at job start Sat Apr 11 2020 05:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.00187 * 2 1 4 4 C 1.54320 * 109.88289 * 238.90125 * 2 1 3 5 5 H 1.08996 * 110.87489 * 336.82700 * 4 2 1 6 6 N 1.46906 * 110.71806 * 100.02935 * 4 2 1 7 7 C 1.46901 * 110.99793 * 199.97845 * 6 4 2 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 4 9 9 O 1.21294 * 119.99849 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.37101 * 119.99707 * 180.02562 * 10 8 7 12 12 H 1.08002 * 119.99704 * 359.97438 * 11 10 8 13 13 C 1.38941 * 119.99927 * 180.02562 * 11 10 8 14 14 N 1.31417 * 120.00180 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00273 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47117 * 59.99412 * 15 13 11 17 17 H 1.48498 * 109.47600 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46756 * 300.00019 * 15 13 11 19 19 C 1.55156 * 102.94383 * 218.39354 * 4 2 1 20 20 C 1.54906 * 101.58293 * 35.50064 * 19 4 2 21 21 N 1.47027 * 109.88033 * 121.09573 * 2 1 3 22 22 C 1.34776 * 125.65026 * 298.32227 * 21 2 1 23 23 O 1.21289 * 119.99812 * 0.02562 * 22 21 2 24 24 C 1.50696 * 120.00366 * 180.02562 * 22 21 2 25 25 O 1.42894 * 109.47538 * 179.97438 * 24 22 21 26 26 C 1.42898 * 114.00288 * 179.97438 * 25 24 22 27 27 C 1.53007 * 109.47302 * 179.97438 * 26 25 24 28 28 C 1.52993 * 117.50059 * 243.74997 * 27 26 25 29 29 C 1.52997 * 117.49840 * 175.08742 * 27 26 25 30 30 H 1.08995 * 109.47397 * 181.09653 * 1 2 3 31 31 H 1.09008 * 109.47111 * 301.09678 * 1 2 3 32 32 H 1.09001 * 109.47377 * 61.09205 * 1 2 3 33 33 H 1.00898 * 110.99995 * 323.92922 * 6 4 2 34 34 H 1.09002 * 109.47401 * 59.99808 * 7 6 4 35 35 H 1.09001 * 109.46874 * 299.99821 * 7 6 4 36 36 H 0.96995 * 120.00011 * 0.02562 * 10 8 7 37 37 H 0.97000 * 119.99884 * 180.02562 * 14 13 11 38 38 H 1.09002 * 111.00529 * 153.57994 * 19 4 2 39 39 H 1.09004 * 111.00377 * 277.39104 * 19 4 2 40 40 H 1.09001 * 110.36419 * 81.83162 * 20 19 4 41 41 H 1.09003 * 110.36721 * 204.15245 * 20 19 4 42 42 H 1.09002 * 109.46892 * 300.00458 * 24 22 21 43 43 H 1.09007 * 109.46616 * 59.99888 * 24 22 21 44 44 H 1.09003 * 109.47313 * 300.00185 * 26 25 24 45 45 H 1.09002 * 109.47117 * 60.00544 * 26 25 24 46 46 H 1.09000 * 115.54251 * 29.41929 * 27 26 25 47 47 H 1.09001 * 117.49759 * 359.97438 * 28 27 26 48 48 H 1.08993 * 117.50143 * 145.02159 * 28 27 26 49 49 H 1.08997 * 117.49742 * 214.98345 * 29 27 26 50 50 H 1.09004 * 117.49861 * 0.02562 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0242 0.0000 4 6 2.0548 -0.7496 -1.2426 5 1 1.3065 -1.4458 -1.6210 6 7 2.4566 0.1986 -2.2903 7 6 2.5020 -0.4568 -3.6042 8 6 2.9163 0.5449 -4.6512 9 8 3.1511 1.6918 -4.3339 10 7 3.0268 0.1660 -5.9399 11 6 3.4043 1.0772 -6.8922 12 1 3.6126 2.0986 -6.6098 13 6 3.5177 0.6868 -8.2208 14 7 3.2638 -0.5560 -8.5646 15 14 4.0327 1.9280 -9.5184 16 1 5.3773 2.4631 -9.1856 17 1 4.0789 1.2654 -10.8466 18 1 3.0516 3.0422 -9.5544 19 6 3.2875 -1.5143 -0.6923 20 6 2.8144 -1.8794 0.7369 21 7 2.0299 -0.7141 1.1840 22 6 1.8084 -0.3613 2.4657 23 8 1.1450 0.6222 2.7181 24 6 2.3850 -1.1888 3.5855 25 8 2.0145 -0.6157 4.8409 26 6 2.5128 -1.3283 5.9749 27 6 2.0577 -0.6287 7.2573 28 6 3.1408 -0.0382 8.1623 29 6 2.3937 -1.3046 8.5881 30 1 -0.3634 -1.0274 0.0197 31 1 -0.3634 0.5308 0.8800 32 1 -0.3634 0.4968 -0.8996 33 1 1.8438 1.0000 -2.3070 34 1 1.5151 -0.8500 -3.8485 35 1 3.2225 -1.2743 -3.5777 36 1 2.8394 -0.7513 -6.1935 37 1 3.3434 -0.8286 -9.4921 38 1 3.4851 -2.4111 -1.2795 39 1 4.1655 -0.8691 -0.6609 40 1 2.1885 -2.7715 0.7129 41 1 3.6715 -2.0339 1.3923 42 1 1.9986 -2.2060 3.5217 43 1 3.4717 -1.2070 3.5013 44 1 2.1283 -2.3482 5.9609 45 1 3.6021 -1.3502 5.9404 46 1 1.1110 -0.0929 7.1897 47 1 4.1775 -0.1485 7.8444 48 1 2.9064 0.8858 8.6907 49 1 1.6681 -1.2131 9.3963 50 1 2.9393 -2.2476 8.5501 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331862386.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:07 Heat of formation + Delta-G solvation = -107.288331 kcal Electronic energy + Delta-G solvation = -28765.457139 eV Core-core repulsion = 24599.728077 eV Total energy + Delta-G solvation = -4165.729062 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.42057 -40.16977 -39.50384 -38.67376 -37.27895 -36.20223 -35.55672 -33.27225 -32.66977 -31.86929 -29.61047 -28.38493 -27.11770 -26.49268 -24.97835 -23.80573 -23.25666 -21.77479 -21.55473 -21.13422 -20.12758 -19.79990 -18.45067 -17.89959 -17.75217 -17.39018 -16.99450 -16.84360 -16.61273 -16.35885 -15.91837 -15.65433 -15.47955 -15.35744 -14.95291 -14.71682 -14.40368 -14.35620 -14.18008 -13.85663 -13.55819 -13.47042 -13.38373 -13.17638 -13.10036 -12.83301 -12.71037 -12.42711 -12.39995 -12.37429 -12.12140 -12.08288 -11.95026 -11.66242 -11.49486 -11.38795 -11.27457 -10.83177 -10.52174 -10.33703 -10.00255 -9.74562 -9.37919 -8.45751 -5.94208 1.40308 1.42569 1.52167 1.52717 1.56592 2.07080 2.29935 2.64380 2.91153 2.99248 3.21824 3.31628 3.51024 3.64290 3.72262 3.90552 3.95623 4.02982 4.11943 4.15406 4.22062 4.24735 4.30816 4.33865 4.34859 4.38257 4.50371 4.51967 4.54711 4.61585 4.69402 4.72425 4.77540 4.77776 4.96238 5.00951 5.06101 5.15500 5.20465 5.24037 5.26141 5.33652 5.41974 5.90016 6.08961 6.11124 6.29582 6.47430 6.61712 7.09627 7.14049 7.57858 8.13787 8.71191 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035483 B = 0.001545 C = 0.001542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.920279 B =18114.555965 C =18158.454494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.136 3.864 3 H 0.056 0.944 4 C 0.082 3.918 5 H 0.082 0.918 6 N -0.673 5.673 7 C 0.069 3.931 8 C 0.436 3.564 9 O -0.626 6.626 10 N -0.571 5.571 11 C -0.336 4.336 12 H 0.077 0.923 13 C -0.009 4.009 14 N -0.918 5.918 15 Si 0.990 3.010 16 H -0.273 1.273 17 H -0.269 1.269 18 H -0.273 1.273 19 C -0.123 4.123 20 C 0.097 3.903 21 N -0.610 5.610 22 C 0.520 3.480 23 O -0.575 6.575 24 C 0.055 3.945 25 O -0.399 6.399 26 C 0.091 3.909 27 C -0.177 4.177 28 C -0.183 4.183 29 C -0.155 4.155 30 H 0.072 0.928 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.343 0.657 34 H 0.071 0.929 35 H 0.112 0.888 36 H 0.398 0.602 37 H 0.278 0.722 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.104 0.896 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.160 -13.588 27.727 30.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.032 3.968 3 H 0.074 0.926 4 C -0.028 4.028 5 H 0.100 0.900 6 N -0.306 5.306 7 C -0.063 4.063 8 C 0.223 3.777 9 O -0.513 6.513 10 N -0.209 5.209 11 C -0.466 4.466 12 H 0.095 0.905 13 C -0.209 4.209 14 N -0.559 5.559 15 Si 0.814 3.186 16 H -0.198 1.198 17 H -0.194 1.194 18 H -0.199 1.199 19 C -0.161 4.161 20 C -0.024 4.024 21 N -0.345 5.345 22 C 0.309 3.691 23 O -0.454 6.454 24 C -0.024 4.024 25 O -0.319 6.319 26 C 0.015 3.985 27 C -0.195 4.195 28 C -0.220 4.220 29 C -0.192 4.192 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.162 0.838 34 H 0.088 0.912 35 H 0.130 0.870 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.124 0.876 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.121 0.879 48 H 0.112 0.888 49 H 0.123 0.877 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -0.802 -12.312 28.105 30.694 hybrid contribution -0.797 0.459 -1.296 1.589 sum -1.599 -11.853 26.809 29.356 Atomic orbital electron populations 1.22080 0.94295 1.02865 1.02193 1.21506 0.94475 0.96057 0.84738 0.92632 1.22678 0.97391 0.93359 0.89366 0.90039 1.60170 1.58067 1.09264 1.03072 1.21564 1.02051 0.95376 0.87329 1.20940 0.83067 0.89815 0.83837 1.90508 1.56621 1.22609 1.81535 1.41897 1.60435 1.12616 1.05912 1.19617 1.44877 0.93842 0.88257 0.90525 1.25971 0.96860 0.98688 0.99415 1.69655 1.49008 1.17267 1.19943 0.85035 0.78746 0.77807 0.77032 1.19841 1.19380 1.19876 1.22906 0.97125 1.01079 0.95002 1.22721 0.96156 0.87883 0.95682 1.48490 1.52713 1.29456 1.03843 1.20637 0.80233 0.85147 0.83044 1.90709 1.41468 1.29458 1.83761 1.22266 1.01193 0.96772 0.82187 1.87967 1.76448 1.53903 1.13537 1.22239 0.98275 0.94935 0.83025 1.22148 1.00779 1.05566 0.91029 1.23177 0.97366 0.98197 1.03287 1.23081 1.03158 0.97265 0.95723 0.90862 0.93402 0.91310 0.83783 0.91157 0.87041 0.76840 0.91282 0.87471 0.91084 0.88135 0.87667 0.86952 0.87596 0.90787 0.91433 0.88790 0.87906 0.88755 0.87732 0.86982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.10 71.98 0.65 -2.93 16 2 C 0.14 3.23 2.98 45.34 0.14 3.37 16 3 H 0.06 1.69 7.97 -2.39 -0.02 1.67 16 4 C 0.08 1.71 2.76 46.10 0.13 1.84 16 5 H 0.08 1.43 7.61 -2.39 -0.02 1.41 16 6 N -0.67 -20.05 5.93 -489.44 -2.90 -22.95 16 7 C 0.07 2.17 6.02 85.56 0.52 2.69 16 8 C 0.44 20.21 7.82 87.66 0.69 20.89 16 9 O -0.63 -34.61 15.78 -3.07 -0.05 -34.66 16 10 N -0.57 -28.64 5.29 -306.98 -1.62 -30.27 16 11 C -0.34 -18.96 9.68 84.04 0.81 -18.15 16 12 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 13 C -0.01 -0.49 5.50 84.92 0.47 -0.02 16 14 N -0.92 -48.63 13.05 21.66 0.28 -48.35 16 15 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 19 C -0.12 -1.93 6.71 31.98 0.21 -1.72 16 20 C 0.10 1.07 6.69 86.85 0.58 1.66 16 21 N -0.61 -12.17 3.06 -788.06 -2.42 -14.59 16 22 C 0.52 12.57 7.72 87.66 0.68 13.25 16 23 O -0.58 -20.24 15.55 15.98 0.25 -19.99 16 24 C 0.05 0.83 5.42 71.23 0.39 1.22 16 25 O -0.40 -8.48 9.88 -129.94 -1.28 -9.76 16 26 C 0.09 1.18 6.22 71.98 0.45 1.63 16 27 C -0.18 -2.51 6.05 -10.79 -0.07 -2.58 16 28 C -0.18 -2.13 10.18 30.62 0.31 -1.82 16 29 C -0.16 -1.39 10.25 30.62 0.31 -1.07 16 30 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.05 1.34 6.91 -2.38 -0.02 1.32 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.34 11.34 8.15 -89.70 -0.73 10.61 16 34 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 35 H 0.11 3.01 8.13 -2.39 -0.02 2.99 16 36 H 0.40 18.69 7.90 -92.71 -0.73 17.95 16 37 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 38 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 0.64 7.48 -2.39 -0.02 0.62 16 42 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.11 1.02 7.85 -2.38 -0.02 1.00 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 0.65 7.87 -2.39 -0.02 0.63 16 46 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 47 H 0.10 1.02 8.03 -2.39 -0.02 1.00 16 48 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -79.28 413.54 0.04 -79.24 By element: Atomic # 1 Polarization: 38.91 SS G_CDS: -0.51 Total: 38.40 kcal Atomic # 6 Polarization: 11.98 SS G_CDS: 6.27 Total: 18.25 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -6.66 Total: -116.16 kcal Atomic # 8 Polarization: -63.33 SS G_CDS: -1.08 Total: -64.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -79.28 0.04 -79.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331862386.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.049 kcal (2) G-P(sol) polarization free energy of solvation -79.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds