Wall clock time and date at job start Sat Apr 11 2020 05:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99765 * 2 1 4 4 C 1.54341 * 109.98947 * 238.96507 * 2 1 3 5 5 H 1.08995 * 110.66684 * 337.04577 * 4 2 1 6 6 N 1.46504 * 110.84785 * 100.19986 * 4 2 1 7 7 C 1.36937 * 119.99635 * 200.14662 * 6 4 2 8 8 H 1.08002 * 120.00262 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99611 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00165 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99598 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46689 * 90.00019 * 11 9 7 13 13 H 1.48502 * 109.46977 * 209.99663 * 11 9 7 14 14 H 1.48494 * 109.47212 * 330.00189 * 11 9 7 15 15 C 1.55159 * 103.01878 * 218.66238 * 4 2 1 16 16 C 1.54909 * 101.57994 * 35.30840 * 15 4 2 17 17 N 1.47020 * 109.88499 * 121.10014 * 2 1 3 18 18 C 1.34776 * 125.64629 * 298.39681 * 17 2 1 19 19 O 1.21282 * 119.99940 * 359.71054 * 18 17 2 20 20 C 1.50698 * 120.00035 * 179.71939 * 18 17 2 21 21 C 1.53006 * 109.47184 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47184 * 180.02562 * 21 20 18 23 23 O 1.21282 * 120.00025 * 359.97438 * 22 21 20 24 24 N 1.34776 * 120.00035 * 180.02562 * 22 21 20 25 25 C 1.47146 * 120.98177 * 359.71353 * 24 22 21 26 26 C 1.53710 * 108.16249 * 129.43626 * 25 24 22 27 27 O 1.42958 * 109.14843 * 52.53723 * 26 25 24 28 28 C 1.42963 * 114.16508 * 297.28743 * 27 26 25 29 29 C 1.47158 * 120.97880 * 179.97438 * 24 22 21 30 30 H 1.08995 * 109.47013 * 300.35628 * 1 2 3 31 31 H 1.08993 * 109.47454 * 60.35698 * 1 2 3 32 32 H 1.09001 * 109.46751 * 180.35506 * 1 2 3 33 33 H 0.97000 * 120.00166 * 20.14167 * 6 4 2 34 34 H 0.97000 * 119.99887 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00610 * 277.23503 * 15 4 2 36 36 H 1.08997 * 111.00290 * 153.37941 * 15 4 2 37 37 H 1.09000 * 110.36583 * 204.14514 * 16 15 4 38 38 H 1.09001 * 110.46025 * 81.87955 * 16 15 4 39 39 H 1.09001 * 109.47612 * 59.99945 * 20 18 17 40 40 H 1.09001 * 109.47122 * 299.99777 * 20 18 17 41 41 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 42 42 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 43 43 H 1.09004 * 109.67917 * 249.21584 * 25 24 22 44 44 H 1.09004 * 109.68335 * 9.76427 * 25 24 22 45 45 H 1.09000 * 109.65775 * 292.57100 * 26 25 24 46 46 H 1.09007 * 109.44322 * 172.37550 * 26 25 24 47 47 H 1.08999 * 109.51566 * 302.65540 * 28 27 26 48 48 H 1.09002 * 109.51292 * 182.50748 * 28 27 26 49 49 H 1.08997 * 109.68298 * 350.23324 * 29 24 22 50 50 H 1.09000 * 109.67440 * 110.78971 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3066 -1.4405 -1.6226 6 7 2.4637 0.1969 -2.2863 7 6 2.5654 -0.2211 -3.5864 8 1 2.3467 -1.2473 -3.8423 9 6 2.9496 0.6741 -4.5752 10 7 3.2157 1.9248 -4.2633 11 14 3.0891 0.1036 -6.3485 12 1 1.7846 0.2914 -7.0328 13 1 4.1320 0.8998 -7.0441 14 1 3.4614 -1.3335 -6.3784 15 6 3.2864 -1.5183 -0.6916 16 6 2.8099 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1476 0.6236 2.7179 20 6 2.3785 -1.1935 3.5853 21 6 1.9815 -0.5801 4.9297 22 6 2.5531 -1.4111 6.0494 23 8 3.2127 -2.3971 5.7971 24 7 2.3306 -1.0591 7.3312 25 6 1.5379 0.1357 7.6619 26 6 0.4624 -0.2702 8.6823 27 8 1.0864 -0.9411 9.7796 28 6 1.7419 -2.1607 9.4236 29 6 2.8779 -1.8551 8.4413 30 1 -0.3633 0.5193 0.8867 31 1 -0.3634 0.5082 -0.8931 32 1 -0.3633 -1.0277 0.0064 33 1 2.6604 1.1185 -2.0564 34 1 3.4838 2.5504 -4.9544 35 1 4.1670 -0.8768 -0.6580 36 1 3.4807 -2.4155 -1.2793 37 1 3.6656 -2.0413 1.3930 38 1 2.1807 -2.7723 0.7132 39 1 3.4652 -1.2161 3.5035 40 1 1.9881 -2.2091 3.5195 41 1 2.3724 0.4353 4.9953 42 1 0.8949 -0.5572 5.0118 43 1 2.1865 0.8991 8.0919 44 1 1.0629 0.5224 6.7602 45 1 -0.2582 -0.9377 8.2096 46 1 -0.0494 0.6217 9.0442 47 1 1.0261 -2.8351 8.9536 48 1 2.1508 -2.6291 10.3189 49 1 3.2907 -2.7874 8.0559 50 1 3.6592 -1.2890 8.9485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331940283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:19 Heat of formation + Delta-G solvation = -98.083600 kcal Electronic energy + Delta-G solvation = -29771.742799 eV Core-core repulsion = 25606.412884 eV Total energy + Delta-G solvation = -4165.329915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.80699 -39.96806 -38.72725 -37.47847 -35.19731 -34.13837 -33.29672 -31.93666 -31.42885 -30.86675 -29.23127 -28.41064 -25.87371 -25.21716 -24.41712 -23.07390 -22.68033 -21.90518 -20.12230 -19.46524 -18.81112 -17.84169 -17.25515 -16.97650 -16.64119 -16.47095 -16.08965 -15.93432 -15.58368 -15.31240 -15.07885 -14.76984 -14.30634 -13.98042 -13.75609 -13.49448 -13.37927 -13.12034 -13.07253 -12.76242 -12.69965 -12.46185 -12.15349 -11.93253 -11.92134 -11.88311 -11.60650 -11.39142 -11.25048 -11.17029 -11.04820 -10.84338 -10.70242 -10.60016 -10.26235 -10.13327 -10.02842 -9.78523 -9.57650 -9.04732 -8.96099 -8.41487 -7.04681 -5.83061 -3.13492 2.25179 2.37701 2.76203 3.14875 3.28546 3.40084 3.45475 3.47084 4.06640 4.19111 4.42547 4.51834 4.53446 4.62523 4.63306 4.69651 4.77407 4.84122 4.97714 5.04158 5.07995 5.19609 5.23467 5.27834 5.33275 5.38108 5.40377 5.48124 5.59310 5.61891 5.66618 5.70517 5.78133 5.92897 5.93536 6.07949 6.12942 6.29661 6.44190 6.54341 6.57056 6.60299 6.70915 6.86824 6.91958 7.64319 7.73133 7.76919 8.30125 8.34580 9.45794 10.00296 10.35024 11.39110 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.001860 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.187361 B =15049.339514 C =15445.044488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.077 0.923 4 C 0.176 3.824 5 H 0.064 0.936 6 N -0.715 5.715 7 C -0.243 4.243 8 H 0.072 0.928 9 C -0.011 4.011 10 N -0.930 5.930 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.155 4.155 16 C 0.097 3.903 17 N -0.607 5.607 18 C 0.526 3.474 19 O -0.549 6.549 20 C -0.120 4.120 21 C -0.123 4.123 22 C 0.519 3.481 23 O -0.538 6.538 24 N -0.620 5.620 25 C 0.069 3.931 26 C 0.046 3.954 27 O -0.380 6.380 28 C 0.048 3.952 29 C 0.076 3.924 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.081 0.919 44 H 0.102 0.898 45 H 0.058 0.942 46 H 0.109 0.891 47 H 0.056 0.944 48 H 0.107 0.893 49 H 0.102 0.898 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 -7.555 27.169 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.095 0.905 4 C 0.064 3.936 5 H 0.082 0.918 6 N -0.355 5.355 7 C -0.374 4.374 8 H 0.090 0.910 9 C -0.207 4.207 10 N -0.577 5.577 11 Si 0.739 3.261 12 H -0.217 1.217 13 H -0.218 1.218 14 H -0.207 1.207 15 C -0.197 4.197 16 C -0.026 4.026 17 N -0.341 5.341 18 C 0.315 3.685 19 O -0.428 6.428 20 C -0.161 4.161 21 C -0.163 4.163 22 C 0.309 3.691 23 O -0.414 6.414 24 N -0.356 5.356 25 C -0.054 4.054 26 C -0.031 4.031 27 O -0.298 6.298 28 C -0.030 4.030 29 C -0.047 4.047 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.075 0.925 48 H 0.125 0.875 49 H 0.120 0.880 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.884 -7.538 27.220 28.510 hybrid contribution 0.300 -0.052 -1.192 1.230 sum -3.584 -7.589 26.028 27.347 Atomic orbital electron populations 1.22032 0.94891 1.01548 1.02673 1.21898 0.94378 0.96924 0.84499 0.90478 1.21247 0.93532 0.91604 0.87206 0.91798 1.42344 1.80766 1.09285 1.03154 1.19198 1.39129 0.95247 0.83833 0.90989 1.24771 1.02090 0.95671 0.98183 1.69663 1.52405 1.03101 1.32577 0.86175 0.77347 0.77618 0.84923 1.21656 1.21761 1.20700 1.23563 1.01372 1.01743 0.92996 1.22418 0.94789 0.88134 0.97292 1.48576 1.52040 1.28439 1.05026 1.20161 0.80475 0.85314 0.82546 1.90670 1.40873 1.27856 1.83417 1.21343 1.03300 1.00186 0.91251 1.21401 1.03092 1.00255 0.91525 1.20837 0.79762 0.85270 0.83276 1.90706 1.39822 1.27563 1.83334 1.48156 1.53761 1.27963 1.05707 1.22615 0.94390 0.87606 1.00776 1.23085 0.93913 0.98110 0.88008 1.87977 1.71781 1.37115 1.32967 1.22995 0.94090 0.86649 0.99219 1.22285 0.96644 0.98040 0.87715 0.92014 0.91182 0.93139 0.78004 0.93376 0.90611 0.90541 0.91126 0.91620 0.88261 0.88351 0.87881 0.88009 0.90094 0.87992 0.92351 0.87338 0.92532 0.87524 0.87950 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.11 37.16 0.34 -2.17 16 2 C 0.13 2.21 3.21 -66.94 -0.21 2.00 16 3 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 4 C 0.18 3.33 3.12 -66.08 -0.21 3.13 16 5 H 0.06 1.22 7.83 -51.93 -0.41 0.81 16 6 N -0.71 -17.23 5.25 -51.64 -0.27 -17.51 16 7 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 8 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 9 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 10 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 11 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C -0.16 -2.53 6.77 -24.58 -0.17 -2.70 16 16 C 0.10 1.27 6.69 -2.53 -0.02 1.26 16 17 N -0.61 -9.16 3.06 -163.01 -0.50 -9.66 16 18 C 0.53 7.64 7.64 -10.99 -0.08 7.55 16 19 O -0.55 -9.39 15.03 5.56 0.08 -9.31 16 20 C -0.12 -1.34 4.00 -27.88 -0.11 -1.45 16 21 C -0.12 -1.17 3.36 -27.88 -0.09 -1.26 16 22 C 0.52 5.35 7.71 -10.99 -0.08 5.26 16 23 O -0.54 -7.21 15.45 5.56 0.09 -7.12 16 24 N -0.62 -5.07 3.01 -172.04 -0.52 -5.59 16 25 C 0.07 0.40 6.57 -3.32 -0.02 0.38 16 26 C 0.05 0.25 7.00 37.53 0.26 0.52 16 27 O -0.38 -2.83 10.74 -35.23 -0.38 -3.20 16 28 C 0.05 0.29 6.98 37.29 0.26 0.55 16 29 C 0.08 0.54 6.63 -3.55 -0.02 0.52 16 30 H 0.06 1.03 6.89 -51.93 -0.36 0.67 16 31 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.39 10.05 7.51 -40.82 -0.31 9.74 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.07 0.80 7.48 -51.93 -0.39 0.42 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.10 7.81 -51.93 -0.41 0.69 16 40 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.10 0.95 7.96 -51.93 -0.41 0.54 16 42 H 0.10 0.89 7.62 -51.93 -0.40 0.49 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.51 6.05 -51.93 -0.31 0.19 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.11 0.40 8.14 -51.92 -0.42 -0.03 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.10 0.82 7.08 -51.93 -0.37 0.45 16 50 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -33.41 398.47 -8.57 -41.98 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.37 Total: 7.82 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.41 Total: 6.55 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: -0.56 Total: -59.56 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.21 Total: -19.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.41 -8.57 -41.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331940283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.101 kcal (2) G-P(sol) polarization free energy of solvation -33.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds