Wall clock time and date at job start Sat Apr 11 2020 05:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.99765 * 2 1 4 4 C 1.54341 * 109.98947 * 238.96507 * 2 1 3 5 5 H 1.08995 * 110.66684 * 337.04577 * 4 2 1 6 6 N 1.46504 * 110.84785 * 100.19986 * 4 2 1 7 7 C 1.36937 * 119.99635 * 200.14662 * 6 4 2 8 8 H 1.08002 * 120.00262 * 359.97438 * 7 6 4 9 9 C 1.38813 * 119.99611 * 179.97438 * 7 6 4 10 10 N 1.31614 * 120.00165 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99598 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46689 * 90.00019 * 11 9 7 13 13 H 1.48502 * 109.46977 * 209.99663 * 11 9 7 14 14 H 1.48494 * 109.47212 * 330.00189 * 11 9 7 15 15 C 1.55159 * 103.01878 * 218.66238 * 4 2 1 16 16 C 1.54909 * 101.57994 * 35.30840 * 15 4 2 17 17 N 1.47020 * 109.88499 * 121.10014 * 2 1 3 18 18 C 1.34776 * 125.64629 * 298.39681 * 17 2 1 19 19 O 1.21282 * 119.99940 * 359.71054 * 18 17 2 20 20 C 1.50698 * 120.00035 * 179.71939 * 18 17 2 21 21 C 1.53006 * 109.47184 * 179.97438 * 20 18 17 22 22 C 1.50698 * 109.47184 * 180.02562 * 21 20 18 23 23 O 1.21282 * 120.00025 * 359.97438 * 22 21 20 24 24 N 1.34776 * 120.00035 * 180.02562 * 22 21 20 25 25 C 1.47146 * 120.98177 * 359.71353 * 24 22 21 26 26 C 1.53710 * 108.16249 * 129.43626 * 25 24 22 27 27 O 1.42958 * 109.14843 * 52.53723 * 26 25 24 28 28 C 1.42963 * 114.16508 * 297.28743 * 27 26 25 29 29 C 1.47158 * 120.97880 * 179.97438 * 24 22 21 30 30 H 1.08995 * 109.47013 * 300.35628 * 1 2 3 31 31 H 1.08993 * 109.47454 * 60.35698 * 1 2 3 32 32 H 1.09001 * 109.46751 * 180.35506 * 1 2 3 33 33 H 0.97000 * 120.00166 * 20.14167 * 6 4 2 34 34 H 0.97000 * 119.99887 * 180.02562 * 10 9 7 35 35 H 1.08999 * 111.00610 * 277.23503 * 15 4 2 36 36 H 1.08997 * 111.00290 * 153.37941 * 15 4 2 37 37 H 1.09000 * 110.36583 * 204.14514 * 16 15 4 38 38 H 1.09001 * 110.46025 * 81.87955 * 16 15 4 39 39 H 1.09001 * 109.47612 * 59.99945 * 20 18 17 40 40 H 1.09001 * 109.47122 * 299.99777 * 20 18 17 41 41 H 1.09001 * 109.47002 * 299.99404 * 21 20 18 42 42 H 1.08993 * 109.46955 * 59.99842 * 21 20 18 43 43 H 1.09004 * 109.67917 * 249.21584 * 25 24 22 44 44 H 1.09004 * 109.68335 * 9.76427 * 25 24 22 45 45 H 1.09000 * 109.65775 * 292.57100 * 26 25 24 46 46 H 1.09007 * 109.44322 * 172.37550 * 26 25 24 47 47 H 1.08999 * 109.51566 * 302.65540 * 28 27 26 48 48 H 1.09002 * 109.51292 * 182.50748 * 28 27 26 49 49 H 1.08997 * 109.68298 * 350.23324 * 29 24 22 50 50 H 1.09000 * 109.67440 * 110.78971 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2428 5 1 1.3066 -1.4405 -1.6226 6 7 2.4637 0.1969 -2.2863 7 6 2.5654 -0.2211 -3.5864 8 1 2.3467 -1.2473 -3.8423 9 6 2.9496 0.6741 -4.5752 10 7 3.2157 1.9248 -4.2633 11 14 3.0891 0.1036 -6.3485 12 1 1.7846 0.2914 -7.0328 13 1 4.1320 0.8998 -7.0441 14 1 3.4614 -1.3335 -6.3784 15 6 3.2864 -1.5183 -0.6916 16 6 2.8099 -1.8825 0.7367 17 7 2.0301 -0.7141 1.1838 18 6 1.8074 -0.3622 2.4656 19 8 1.1476 0.6236 2.7179 20 6 2.3785 -1.1935 3.5853 21 6 1.9815 -0.5801 4.9297 22 6 2.5531 -1.4111 6.0494 23 8 3.2127 -2.3971 5.7971 24 7 2.3306 -1.0591 7.3312 25 6 1.5379 0.1357 7.6619 26 6 0.4624 -0.2702 8.6823 27 8 1.0864 -0.9411 9.7796 28 6 1.7419 -2.1607 9.4236 29 6 2.8779 -1.8551 8.4413 30 1 -0.3633 0.5193 0.8867 31 1 -0.3634 0.5082 -0.8931 32 1 -0.3633 -1.0277 0.0064 33 1 2.6604 1.1185 -2.0564 34 1 3.4838 2.5504 -4.9544 35 1 4.1670 -0.8768 -0.6580 36 1 3.4807 -2.4155 -1.2793 37 1 3.6656 -2.0413 1.3930 38 1 2.1807 -2.7723 0.7132 39 1 3.4652 -1.2161 3.5035 40 1 1.9881 -2.2091 3.5195 41 1 2.3724 0.4353 4.9953 42 1 0.8949 -0.5572 5.0118 43 1 2.1865 0.8991 8.0919 44 1 1.0629 0.5224 6.7602 45 1 -0.2582 -0.9377 8.2096 46 1 -0.0494 0.6217 9.0442 47 1 1.0261 -2.8351 8.9536 48 1 2.1508 -2.6291 10.3189 49 1 3.2907 -2.7874 8.0559 50 1 3.6592 -1.2890 8.9485 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331940283.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:18 Heat of formation + Delta-G solvation = -121.005955 kcal Electronic energy + Delta-G solvation = -29772.736787 eV Core-core repulsion = 25606.412884 eV Total energy + Delta-G solvation = -4166.323903 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.58788 -41.08018 -39.41792 -38.77920 -35.91351 -35.84160 -34.22888 -33.27256 -32.41360 -32.09236 -30.78935 -29.07985 -26.86032 -26.70376 -25.03266 -24.73381 -23.66238 -22.75908 -21.56039 -20.21166 -19.95260 -19.14511 -18.66545 -17.86793 -17.45219 -17.33088 -17.04934 -16.67498 -16.54352 -16.15646 -16.04128 -15.97184 -15.48582 -15.36749 -14.92706 -14.71661 -14.61275 -14.38408 -14.06104 -13.82641 -13.55145 -13.52804 -13.24858 -13.12507 -13.05623 -12.90928 -12.69806 -12.60166 -12.51774 -12.37043 -12.23151 -12.17684 -12.06298 -11.76554 -11.71257 -11.53051 -11.25523 -10.93963 -10.90276 -10.80466 -9.66911 -9.65260 -9.02424 -7.93917 -5.23762 1.48431 1.49424 1.50747 1.58975 1.61513 1.68314 2.04508 2.57595 2.85765 3.26668 3.38964 3.62904 3.70436 3.76774 3.78144 3.88594 3.99456 4.03072 4.08779 4.09845 4.20488 4.21182 4.26927 4.36341 4.42844 4.46234 4.52465 4.58291 4.64776 4.68300 4.73893 4.76873 4.78934 4.84085 4.89459 4.92483 4.94936 5.05997 5.23112 5.23862 5.33679 5.35040 5.46586 5.55280 6.09283 6.20136 6.26511 6.57840 7.00262 7.13389 7.32976 8.05237 8.28885 9.29540 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033121 B = 0.001860 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.187361 B =15049.339514 C =15445.044488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.133 3.867 3 H 0.046 0.954 4 C 0.169 3.831 5 H 0.069 0.931 6 N -0.729 5.729 7 C -0.235 4.235 8 H 0.083 0.917 9 C -0.077 4.077 10 N -0.971 5.971 11 Si 0.973 3.027 12 H -0.289 1.289 13 H -0.300 1.300 14 H -0.266 1.266 15 C -0.148 4.148 16 C 0.105 3.895 17 N -0.610 5.610 18 C 0.525 3.475 19 O -0.578 6.578 20 C -0.110 4.110 21 C -0.117 4.117 22 C 0.520 3.480 23 O -0.574 6.574 24 N -0.619 5.619 25 C 0.066 3.934 26 C 0.045 3.955 27 O -0.396 6.396 28 C 0.051 3.949 29 C 0.073 3.927 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.371 0.629 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.059 0.941 46 H 0.128 0.872 47 H 0.054 0.946 48 H 0.125 0.875 49 H 0.092 0.908 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.348 -9.433 28.600 30.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.028 3.972 3 H 0.064 0.936 4 C 0.060 3.940 5 H 0.087 0.913 6 N -0.369 5.369 7 C -0.367 4.367 8 H 0.101 0.899 9 C -0.269 4.269 10 N -0.621 5.621 11 Si 0.803 3.197 12 H -0.216 1.216 13 H -0.227 1.227 14 H -0.190 1.190 15 C -0.189 4.189 16 C -0.017 4.017 17 N -0.343 5.343 18 C 0.316 3.684 19 O -0.458 6.458 20 C -0.150 4.150 21 C -0.157 4.157 22 C 0.310 3.690 23 O -0.453 6.453 24 N -0.353 5.353 25 C -0.056 4.056 26 C -0.032 4.032 27 O -0.314 6.314 28 C -0.026 4.026 29 C -0.049 4.049 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.203 0.797 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.130 0.870 45 H 0.077 0.923 46 H 0.146 0.854 47 H 0.073 0.927 48 H 0.143 0.857 49 H 0.110 0.890 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.373 -9.467 28.711 30.546 hybrid contribution 0.410 0.533 -1.519 1.661 sum -3.963 -8.933 27.193 28.895 Atomic orbital electron populations 1.21922 0.94027 1.02389 1.01764 1.21597 0.94954 0.95408 0.85208 0.93625 1.21445 0.94858 0.91099 0.86634 0.91286 1.42516 1.81143 1.09499 1.03704 1.19610 1.36780 0.95453 0.84863 0.89923 1.25582 1.03226 0.95913 1.02195 1.69830 1.54660 1.04314 1.33338 0.85138 0.76781 0.77684 0.80134 1.21612 1.22659 1.19043 1.23381 0.99056 1.01212 0.95273 1.22511 0.95897 0.87992 0.95342 1.48633 1.52275 1.28798 1.04640 1.20762 0.79811 0.85101 0.82744 1.90658 1.42190 1.29223 1.83777 1.21295 1.03259 1.00041 0.90392 1.21352 1.03690 1.00090 0.90542 1.20885 0.79360 0.84798 0.84004 1.90689 1.41602 1.29095 1.83955 1.48260 1.53251 1.28438 1.05340 1.22796 0.94481 0.86852 1.01447 1.23222 0.93666 0.98798 0.87561 1.87960 1.71951 1.37579 1.33956 1.23042 0.93536 0.86329 0.99670 1.22366 0.97336 0.97599 0.87598 0.92477 0.92487 0.91333 0.79719 0.94135 0.92674 0.89426 0.88644 0.88905 0.87828 0.87121 0.87549 0.86997 0.89368 0.87035 0.92288 0.85424 0.92734 0.85677 0.88986 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.61 9.11 71.98 0.66 -3.95 16 2 C 0.13 4.62 3.21 45.35 0.15 4.77 16 3 H 0.05 1.88 7.69 -2.39 -0.02 1.86 16 4 C 0.17 6.32 3.12 46.19 0.14 6.46 16 5 H 0.07 2.52 7.83 -2.39 -0.02 2.50 16 6 N -0.73 -35.69 5.25 -317.29 -1.67 -37.36 16 7 C -0.24 -12.55 9.98 84.03 0.84 -11.71 16 8 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 9 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 10 N -0.97 -59.08 13.06 21.65 0.28 -58.80 16 11 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 15 C -0.15 -4.60 6.77 31.99 0.22 -4.39 16 16 C 0.10 2.45 6.69 86.86 0.58 3.03 16 17 N -0.61 -17.43 3.06 -788.04 -2.41 -19.84 16 18 C 0.53 14.40 7.64 87.66 0.67 15.07 16 19 O -0.58 -19.26 15.03 -3.04 -0.05 -19.30 16 20 C -0.11 -2.20 4.00 29.85 0.12 -2.08 16 21 C -0.12 -2.01 3.36 29.85 0.10 -1.91 16 22 C 0.52 9.92 7.71 87.66 0.68 10.60 16 23 O -0.57 -14.70 15.45 -3.04 -0.05 -14.75 16 24 N -0.62 -9.17 3.01 -816.60 -2.46 -11.63 16 25 C 0.07 0.65 6.57 86.50 0.57 1.21 16 26 C 0.04 0.40 7.00 72.22 0.51 0.90 16 27 O -0.40 -5.15 10.74 -148.98 -1.60 -6.75 16 28 C 0.05 0.54 6.98 72.07 0.50 1.04 16 29 C 0.07 0.96 6.63 86.34 0.57 1.54 16 30 H 0.06 1.89 6.89 -2.39 -0.02 1.87 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.37 20.09 7.51 -92.71 -0.70 19.40 16 34 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 37 H 0.10 1.83 7.48 -2.39 -0.02 1.81 16 38 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.10 2.04 7.81 -2.39 -0.02 2.02 16 40 H 0.11 2.00 8.10 -2.39 -0.02 1.98 16 41 H 0.11 1.78 7.96 -2.39 -0.02 1.76 16 42 H 0.11 1.71 7.62 -2.39 -0.02 1.69 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.11 0.87 6.05 -2.38 -0.01 0.86 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 47 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.09 1.42 7.08 -2.39 -0.02 1.40 16 50 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.90 398.47 1.08 -71.82 By element: Atomic # 1 Polarization: 32.37 SS G_CDS: 0.24 Total: 32.60 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 6.76 Total: 16.71 kcal Atomic # 7 Polarization: -121.37 SS G_CDS: -6.26 Total: -127.63 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.69 Total: -40.80 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.90 1.08 -71.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331940283.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.181 kcal (2) G-P(sol) polarization free energy of solvation -72.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds