Wall clock time and date at job start Sat Apr 11 2020 05:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.32940 * 2 1 4 4 C 1.54480 * 110.46387 * 237.68647 * 2 1 3 5 5 C 1.54504 * 104.06125 * 217.14230 * 4 2 1 6 6 H 1.09001 * 110.62838 * 241.29879 * 5 4 2 7 7 N 1.46504 * 110.51037 * 118.64507 * 5 4 2 8 8 C 1.34783 * 119.99683 * 90.35910 * 7 5 4 9 9 O 1.21340 * 120.00188 * 359.97438 * 8 7 5 10 10 C 1.49452 * 119.99650 * 180.02562 * 8 7 5 11 11 O 1.21345 * 119.99977 * 359.97438 * 10 8 7 12 12 N 1.34769 * 119.99714 * 180.02562 * 10 8 7 13 13 C 1.46504 * 120.00023 * 180.02562 * 12 10 8 14 14 C 1.53035 * 109.46290 * 154.99735 * 13 12 10 15 15 C 1.53195 * 109.31289 * 181.38250 * 14 13 12 16 16 N 1.46917 * 108.77654 * 305.36323 * 15 14 13 17 17 C 1.36940 * 120.63298 * 233.58331 * 16 15 14 18 18 H 1.07999 * 119.99736 * 29.31344 * 17 16 15 19 19 C 1.38812 * 120.00058 * 209.30646 * 17 16 15 20 20 N 1.31617 * 119.99809 * 24.34730 * 19 17 16 21 21 Si 1.86801 * 120.00066 * 204.34425 * 19 17 16 22 22 H 1.48493 * 109.47006 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46697 * 300.00189 * 21 19 17 24 24 H 1.48500 * 109.46788 * 60.00296 * 21 19 17 25 25 C 1.46932 * 118.73868 * 53.86364 * 16 15 14 26 26 C 1.53048 * 109.45657 * 275.06557 * 13 12 10 27 27 C 1.54483 * 104.06537 * 0.02562 * 5 4 2 28 28 H 1.08996 * 110.37201 * 265.14425 * 27 5 4 29 29 C 1.53004 * 110.37298 * 142.91813 * 27 5 4 30 30 O 1.44422 * 104.80238 * 23.97796 * 27 5 4 31 31 H 1.09004 * 109.46931 * 299.20334 * 1 2 3 32 32 H 1.08999 * 109.47273 * 59.20287 * 1 2 3 33 33 H 1.09002 * 109.47426 * 179.20152 * 1 2 3 34 34 H 1.08994 * 110.51054 * 98.50059 * 4 2 1 35 35 H 1.09002 * 110.51173 * 335.78804 * 4 2 1 36 36 H 0.96999 * 120.00449 * 270.35652 * 7 5 4 37 37 H 0.97008 * 120.00476 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.44980 * 35.02619 * 13 12 10 39 39 H 1.09002 * 109.49754 * 61.43532 * 14 13 12 40 40 H 1.08997 * 109.49789 * 301.33720 * 14 13 12 41 41 H 1.09004 * 109.58404 * 185.57938 * 15 14 13 42 42 H 1.09000 * 109.58570 * 65.15650 * 15 14 13 43 43 H 0.97001 * 120.00351 * 5.77293 * 20 19 17 44 44 H 1.08991 * 109.58669 * 65.92224 * 25 16 15 45 45 H 1.09000 * 109.58696 * 186.35121 * 25 16 15 46 46 H 1.08998 * 109.49880 * 298.56204 * 26 13 12 47 47 H 1.09000 * 109.49702 * 58.66220 * 26 13 12 48 48 H 1.09004 * 109.46781 * 60.00214 * 29 27 5 49 49 H 1.09000 * 109.47018 * 180.02562 * 29 27 5 50 50 H 1.08995 * 109.47158 * 300.00443 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3206 -1.5032 -0.6837 6 1 4.2149 -1.1757 -1.2139 7 7 3.1586 -2.9545 -0.8006 8 6 3.5688 -3.5907 -1.9158 9 8 4.0718 -2.9613 -2.8231 10 6 3.4030 -5.0712 -2.0353 11 8 2.8995 -5.7005 -1.1281 12 7 3.8136 -5.7073 -3.1502 13 6 3.6506 -7.1585 -3.2676 14 6 3.5875 -7.5465 -4.7466 15 6 3.3825 -9.0601 -4.8651 16 7 4.4407 -9.7414 -4.1072 17 6 5.2195 -10.6980 -4.7019 18 1 5.4174 -10.6504 -5.7625 19 6 5.7545 -11.7288 -3.9415 20 7 5.1747 -12.0848 -2.8149 21 14 7.2973 -12.6106 -4.5173 22 1 7.6613 -13.6634 -3.5355 23 1 7.0458 -13.2345 -5.8413 24 1 8.4109 -11.6350 -4.6333 25 6 4.6435 -9.3813 -2.6972 26 6 4.8382 -7.8603 -2.6046 27 6 3.3878 -1.0845 0.8018 28 1 4.0514 -0.2287 0.9252 29 6 3.8642 -2.2552 1.6642 30 8 2.0323 -0.7233 1.1451 31 1 -0.3633 0.5014 0.8971 32 1 -0.3634 0.5262 -0.8827 33 1 -0.3634 -1.0276 -0.0143 34 1 2.3450 -0.0834 -2.0207 35 1 1.3313 -1.4928 -1.5769 36 1 2.7562 -3.4577 -0.0755 37 1 4.2165 -5.2043 -3.8753 38 1 2.7277 -7.4613 -2.7731 39 1 4.5202 -7.2664 -5.2363 40 1 2.7557 -7.0282 -5.2236 41 1 3.4358 -9.3551 -5.9131 42 1 2.4087 -9.3299 -4.4565 43 1 4.3289 -11.6857 -2.5573 44 1 3.7705 -9.6768 -2.1154 45 1 5.5292 -9.8884 -2.3143 46 1 5.7590 -7.5772 -3.1144 47 1 4.8964 -7.5652 -1.5569 48 1 4.8564 -2.5668 1.3377 49 1 3.9057 -1.9443 2.7080 50 1 3.1694 -3.0887 1.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332609418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:27 Heat of formation + Delta-G solvation = -98.125027 kcal Electronic energy + Delta-G solvation = -30231.248929 eV Core-core repulsion = 26065.917217 eV Total energy + Delta-G solvation = -4165.331712 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12586 -40.05407 -38.65818 -37.48746 -35.42201 -34.57217 -33.15197 -32.28210 -31.18993 -30.28166 -29.45386 -29.19802 -25.89786 -24.66618 -23.83443 -22.49203 -21.97047 -21.73018 -20.88142 -20.45749 -19.69504 -18.55079 -17.41448 -17.27052 -16.62651 -16.22513 -15.98710 -15.86206 -15.49275 -15.08481 -14.47214 -14.21767 -14.20396 -13.82195 -13.62394 -13.53240 -13.40947 -13.31964 -12.99789 -12.83855 -12.81333 -12.47471 -12.36298 -12.21640 -11.80707 -11.71636 -11.53627 -11.43098 -11.35040 -11.28486 -10.78216 -10.69570 -10.48590 -10.34033 -10.30706 -10.11296 -10.00881 -9.66003 -9.53430 -9.31586 -8.95375 -8.39246 -6.92293 -6.08403 -3.27193 1.32905 2.21597 3.13146 3.27941 3.48648 3.51220 3.53274 3.70373 4.04938 4.12439 4.35951 4.44973 4.52563 4.57838 4.65153 4.82538 4.93007 4.97740 5.10369 5.10917 5.22294 5.27130 5.30725 5.35775 5.42165 5.45220 5.53570 5.59166 5.64930 5.70186 5.75598 5.87463 5.93842 6.05009 6.08954 6.20674 6.35864 6.40511 6.44821 6.57747 6.60940 6.73717 6.84141 7.00674 7.15008 7.32970 7.63338 7.97659 7.99423 8.55798 9.08694 9.81847 10.26134 11.19898 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.002089 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.152681 B =13401.946462 C =13754.561697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.164 4.164 5 C 0.113 3.887 6 H 0.109 0.891 7 N -0.694 5.694 8 C 0.510 3.490 9 O -0.521 6.521 10 C 0.503 3.497 11 O -0.521 6.521 12 N -0.690 5.690 13 C 0.149 3.851 14 C -0.140 4.140 15 C 0.150 3.850 16 N -0.599 5.599 17 C -0.352 4.352 18 H 0.056 0.944 19 C -0.023 4.023 20 N -0.914 5.914 21 Si 1.065 2.935 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.293 1.293 25 C 0.154 3.846 26 C -0.143 4.143 27 C 0.066 3.934 28 H 0.085 0.915 29 C -0.150 4.150 30 O -0.365 6.365 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.416 0.584 37 H 0.408 0.592 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.269 0.731 44 H 0.021 0.979 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.056 0.944 48 H 0.076 0.924 49 H 0.070 0.930 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.010 25.818 5.227 27.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.202 4.202 5 C 0.007 3.993 6 H 0.127 0.873 7 N -0.349 5.349 8 C 0.291 3.709 9 O -0.396 6.396 10 C 0.282 3.718 11 O -0.397 6.397 12 N -0.342 5.342 13 C 0.046 3.954 14 C -0.180 4.180 15 C 0.023 3.977 16 N -0.323 5.323 17 C -0.481 4.481 18 H 0.074 0.926 19 C -0.226 4.226 20 N -0.554 5.554 21 Si 0.895 3.105 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.220 1.220 25 C 0.028 3.972 26 C -0.183 4.183 27 C 0.007 3.993 28 H 0.103 0.897 29 C -0.208 4.208 30 O -0.285 6.285 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.255 0.745 37 H 0.244 0.756 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.037 0.963 43 H 0.080 0.920 44 H 0.039 0.961 45 H 0.101 0.899 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.095 0.905 49 H 0.089 0.911 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.996 24.548 5.814 25.717 hybrid contribution -1.048 1.375 -0.721 1.873 sum -6.044 25.923 5.094 27.101 Atomic orbital electron populations 1.21806 0.92861 1.03178 1.02574 1.23003 0.95681 0.95341 0.84703 0.90990 1.23500 0.97680 1.00339 0.98714 1.22447 0.99720 0.80016 0.97070 0.87298 1.45927 1.61566 1.07992 1.19462 1.20419 0.78803 0.88823 0.82893 1.90745 1.42445 1.67923 1.38520 1.19978 0.80238 0.87685 0.83883 1.90779 1.42924 1.67518 1.38445 1.46163 1.59942 1.09803 1.18242 1.21203 1.00184 0.76365 0.97629 1.22356 1.01644 1.00165 0.93807 1.20844 0.91373 0.88681 0.96753 1.44182 1.36289 1.43720 1.08121 1.19951 1.28394 1.04444 0.95310 0.92611 1.25899 1.04392 0.94896 0.97400 1.70782 1.17978 1.41022 1.25598 0.83524 0.75816 0.76004 0.75175 1.21080 1.21951 1.22036 1.21018 1.00228 0.89914 0.86065 1.22547 0.97165 0.99247 0.99338 1.23253 0.85486 0.98219 0.92300 0.89683 1.21801 1.01748 0.97001 1.00221 1.89213 1.26456 1.74600 1.38192 0.91683 0.91024 0.91652 0.89435 0.89678 0.74463 0.75641 0.89578 0.91444 0.92249 0.91973 0.96263 0.91970 0.96090 0.89948 0.91979 0.92550 0.90539 0.91090 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.53 37.16 0.35 -0.54 16 2 C 0.07 0.48 3.92 -25.95 -0.10 0.38 16 3 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 4 C -0.16 -1.21 6.42 -25.17 -0.16 -1.37 16 5 C 0.11 0.92 3.34 -66.36 -0.22 0.70 16 6 H 0.11 0.91 7.55 -51.93 -0.39 0.52 16 7 N -0.69 -6.98 4.40 -52.71 -0.23 -7.21 16 8 C 0.51 6.42 7.89 -11.58 -0.09 6.32 16 9 O -0.52 -7.30 16.12 5.51 0.09 -7.21 16 10 C 0.50 7.32 7.85 -11.59 -0.09 7.23 16 11 O -0.52 -8.77 16.14 5.50 0.09 -8.68 16 12 N -0.69 -9.93 5.07 -54.19 -0.27 -10.21 16 13 C 0.15 2.50 2.41 -67.89 -0.16 2.34 16 14 C -0.14 -2.30 5.55 -26.61 -0.15 -2.44 16 15 C 0.15 3.05 6.51 -3.71 -0.02 3.03 16 16 N -0.60 -14.72 2.83 -172.05 -0.49 -15.20 16 17 C -0.35 -9.67 9.48 -15.06 -0.14 -9.81 16 18 H 0.06 1.53 7.94 -52.49 -0.42 1.12 16 19 C -0.02 -0.66 4.69 -17.43 -0.08 -0.74 16 20 N -0.91 -27.25 12.45 55.49 0.69 -26.56 16 21 Si 1.07 25.04 29.98 -169.99 -5.10 19.94 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 C 0.15 3.60 4.72 -3.48 -0.02 3.59 16 26 C -0.14 -2.74 5.67 -26.38 -0.15 -2.89 16 27 C 0.07 0.48 3.87 -25.95 -0.10 0.38 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 29 C -0.15 -1.08 8.91 37.16 0.33 -0.75 16 30 O -0.36 -3.21 11.04 -35.23 -0.39 -3.60 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.46 8.13 -51.93 -0.42 0.03 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.72 7.69 -51.93 -0.40 0.32 16 36 H 0.42 4.13 6.02 -40.82 -0.25 3.88 16 37 H 0.41 5.27 8.07 -40.82 -0.33 4.94 16 38 H 0.09 1.57 7.58 -51.93 -0.39 1.18 16 39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.27 8.10 6.71 -40.82 -0.27 7.83 16 44 H 0.02 0.51 7.85 -51.93 -0.41 0.10 16 45 H 0.08 2.16 6.38 -51.93 -0.33 1.83 16 46 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.07 0.53 6.27 -51.93 -0.33 0.21 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -32.04 395.96 -8.67 -40.72 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.22 Total: 6.62 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -0.81 Total: 5.43 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.30 Total: -59.19 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.21 Total: -19.49 kcal Atomic # 14 Polarization: 25.04 SS G_CDS: -5.10 Total: 19.94 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.04 -8.67 -40.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332609418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.410 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds