Wall clock time and date at job start Sat Apr 11 2020 05:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 110.32940 * 2 1 4 4 C 1.54480 * 110.46387 * 237.68647 * 2 1 3 5 5 C 1.54504 * 104.06125 * 217.14230 * 4 2 1 6 6 H 1.09001 * 110.62838 * 241.29879 * 5 4 2 7 7 N 1.46504 * 110.51037 * 118.64507 * 5 4 2 8 8 C 1.34783 * 119.99683 * 90.35910 * 7 5 4 9 9 O 1.21340 * 120.00188 * 359.97438 * 8 7 5 10 10 C 1.49452 * 119.99650 * 180.02562 * 8 7 5 11 11 O 1.21345 * 119.99977 * 359.97438 * 10 8 7 12 12 N 1.34769 * 119.99714 * 180.02562 * 10 8 7 13 13 C 1.46504 * 120.00023 * 180.02562 * 12 10 8 14 14 C 1.53035 * 109.46290 * 154.99735 * 13 12 10 15 15 C 1.53195 * 109.31289 * 181.38250 * 14 13 12 16 16 N 1.46917 * 108.77654 * 305.36323 * 15 14 13 17 17 C 1.36940 * 120.63298 * 233.58331 * 16 15 14 18 18 H 1.07999 * 119.99736 * 29.31344 * 17 16 15 19 19 C 1.38812 * 120.00058 * 209.30646 * 17 16 15 20 20 N 1.31617 * 119.99809 * 24.34730 * 19 17 16 21 21 Si 1.86801 * 120.00066 * 204.34425 * 19 17 16 22 22 H 1.48493 * 109.47006 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46697 * 300.00189 * 21 19 17 24 24 H 1.48500 * 109.46788 * 60.00296 * 21 19 17 25 25 C 1.46932 * 118.73868 * 53.86364 * 16 15 14 26 26 C 1.53048 * 109.45657 * 275.06557 * 13 12 10 27 27 C 1.54483 * 104.06537 * 0.02562 * 5 4 2 28 28 H 1.08996 * 110.37201 * 265.14425 * 27 5 4 29 29 C 1.53004 * 110.37298 * 142.91813 * 27 5 4 30 30 O 1.44422 * 104.80238 * 23.97796 * 27 5 4 31 31 H 1.09004 * 109.46931 * 299.20334 * 1 2 3 32 32 H 1.08999 * 109.47273 * 59.20287 * 1 2 3 33 33 H 1.09002 * 109.47426 * 179.20152 * 1 2 3 34 34 H 1.08994 * 110.51054 * 98.50059 * 4 2 1 35 35 H 1.09002 * 110.51173 * 335.78804 * 4 2 1 36 36 H 0.96999 * 120.00449 * 270.35652 * 7 5 4 37 37 H 0.97008 * 120.00476 * 359.97438 * 12 10 8 38 38 H 1.09000 * 109.44980 * 35.02619 * 13 12 10 39 39 H 1.09002 * 109.49754 * 61.43532 * 14 13 12 40 40 H 1.08997 * 109.49789 * 301.33720 * 14 13 12 41 41 H 1.09004 * 109.58404 * 185.57938 * 15 14 13 42 42 H 1.09000 * 109.58570 * 65.15650 * 15 14 13 43 43 H 0.97001 * 120.00351 * 5.77293 * 20 19 17 44 44 H 1.08991 * 109.58669 * 65.92224 * 25 16 15 45 45 H 1.09000 * 109.58696 * 186.35121 * 25 16 15 46 46 H 1.08998 * 109.49880 * 298.56204 * 26 13 12 47 47 H 1.09000 * 109.49702 * 58.66220 * 26 13 12 48 48 H 1.09004 * 109.46781 * 60.00214 * 29 27 5 49 49 H 1.09000 * 109.47018 * 180.02562 * 29 27 5 50 50 H 1.08995 * 109.47158 * 300.00443 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0701 -0.7737 -1.2232 5 6 3.3206 -1.5032 -0.6837 6 1 4.2149 -1.1757 -1.2139 7 7 3.1586 -2.9545 -0.8006 8 6 3.5688 -3.5907 -1.9158 9 8 4.0718 -2.9613 -2.8231 10 6 3.4030 -5.0712 -2.0353 11 8 2.8995 -5.7005 -1.1281 12 7 3.8136 -5.7073 -3.1502 13 6 3.6506 -7.1585 -3.2676 14 6 3.5875 -7.5465 -4.7466 15 6 3.3825 -9.0601 -4.8651 16 7 4.4407 -9.7414 -4.1072 17 6 5.2195 -10.6980 -4.7019 18 1 5.4174 -10.6504 -5.7625 19 6 5.7545 -11.7288 -3.9415 20 7 5.1747 -12.0848 -2.8149 21 14 7.2973 -12.6106 -4.5173 22 1 7.6613 -13.6634 -3.5355 23 1 7.0458 -13.2345 -5.8413 24 1 8.4109 -11.6350 -4.6333 25 6 4.6435 -9.3813 -2.6972 26 6 4.8382 -7.8603 -2.6046 27 6 3.3878 -1.0845 0.8018 28 1 4.0514 -0.2287 0.9252 29 6 3.8642 -2.2552 1.6642 30 8 2.0323 -0.7233 1.1451 31 1 -0.3633 0.5014 0.8971 32 1 -0.3634 0.5262 -0.8827 33 1 -0.3634 -1.0276 -0.0143 34 1 2.3450 -0.0834 -2.0207 35 1 1.3313 -1.4928 -1.5769 36 1 2.7562 -3.4577 -0.0755 37 1 4.2165 -5.2043 -3.8753 38 1 2.7277 -7.4613 -2.7731 39 1 4.5202 -7.2664 -5.2363 40 1 2.7557 -7.0282 -5.2236 41 1 3.4358 -9.3551 -5.9131 42 1 2.4087 -9.3299 -4.4565 43 1 4.3289 -11.6857 -2.5573 44 1 3.7705 -9.6768 -2.1154 45 1 5.5292 -9.8884 -2.3143 46 1 5.7590 -7.5772 -3.1144 47 1 4.8964 -7.5652 -1.5569 48 1 4.8564 -2.5668 1.3377 49 1 3.9057 -1.9443 2.7080 50 1 3.1694 -3.0887 1.5610 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332609418.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:25 Heat of formation + Delta-G solvation = -120.576195 kcal Electronic energy + Delta-G solvation = -30232.222484 eV Core-core repulsion = 26065.917217 eV Total energy + Delta-G solvation = -4166.305267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.07259 -40.96150 -39.79634 -38.97349 -36.59668 -35.81287 -34.02069 -33.69052 -31.98772 -31.88275 -31.16549 -29.78495 -27.35361 -25.97819 -24.77390 -24.08925 -23.45362 -22.32166 -21.79556 -21.40037 -21.20514 -19.86349 -19.26860 -18.22637 -17.41566 -17.09599 -17.02125 -16.73245 -16.49392 -16.13561 -16.05951 -15.73022 -15.40324 -15.33217 -15.20145 -14.85581 -14.45451 -14.22025 -14.11928 -13.96876 -13.54762 -13.51427 -13.44505 -13.04030 -12.89262 -12.85890 -12.78123 -12.58576 -12.45667 -12.13943 -12.11386 -12.00131 -11.99154 -11.84302 -11.83352 -11.71085 -11.30926 -10.95324 -10.77344 -10.49789 -10.34923 -10.26520 -8.96638 -8.25339 -5.42931 0.24135 1.18372 1.59251 1.66691 1.85322 2.03695 2.48869 2.65890 2.73451 3.21298 3.29211 3.45869 3.51935 3.54604 3.70418 3.87652 3.87791 3.96464 4.12462 4.15585 4.28340 4.28657 4.39313 4.41901 4.45697 4.59402 4.59807 4.64740 4.68514 4.78707 4.84154 4.87118 4.91175 4.98414 4.99598 5.05326 5.12005 5.13867 5.14062 5.18261 5.22543 5.25958 5.37336 5.80473 5.85224 5.89159 6.24793 6.38146 6.62996 6.85408 7.03872 7.75495 8.20638 8.99770 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025844 B = 0.002089 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.152681 B =13401.946462 C =13754.561697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.091 0.909 4 C -0.160 4.160 5 C 0.108 3.892 6 H 0.112 0.888 7 N -0.682 5.682 8 C 0.517 3.483 9 O -0.534 6.534 10 C 0.502 3.498 11 O -0.545 6.545 12 N -0.681 5.681 13 C 0.160 3.840 14 C -0.124 4.124 15 C 0.144 3.856 16 N -0.617 5.617 17 C -0.354 4.354 18 H 0.056 0.944 19 C -0.078 4.078 20 N -0.943 5.943 21 Si 1.115 2.885 22 H -0.294 1.294 23 H -0.274 1.274 24 H -0.279 1.279 25 C 0.162 3.838 26 C -0.128 4.128 27 C 0.069 3.931 28 H 0.107 0.893 29 C -0.151 4.151 30 O -0.385 6.385 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.417 0.583 37 H 0.419 0.581 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.004 0.996 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.079 0.921 49 H 0.076 0.924 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.708 28.398 4.251 29.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.108 0.892 4 C -0.199 4.199 5 C 0.004 3.996 6 H 0.130 0.870 7 N -0.336 5.336 8 C 0.298 3.702 9 O -0.411 6.411 10 C 0.283 3.717 11 O -0.423 6.423 12 N -0.333 5.333 13 C 0.056 3.944 14 C -0.164 4.164 15 C 0.018 3.982 16 N -0.342 5.342 17 C -0.484 4.484 18 H 0.074 0.926 19 C -0.274 4.274 20 N -0.585 5.585 21 Si 0.939 3.061 22 H -0.221 1.221 23 H -0.199 1.199 24 H -0.205 1.205 25 C 0.035 3.965 26 C -0.168 4.168 27 C 0.011 3.989 28 H 0.124 0.876 29 C -0.209 4.209 30 O -0.305 6.305 31 H 0.085 0.915 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.257 0.743 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.022 0.978 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.098 0.902 49 H 0.095 0.905 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.718 27.194 4.823 28.019 hybrid contribution -1.226 0.624 -0.386 1.429 sum -5.944 27.818 4.437 28.790 Atomic orbital electron populations 1.21826 0.92562 1.02584 1.03418 1.23151 0.96008 0.95909 0.83775 0.89167 1.23480 0.96821 1.00255 0.99342 1.22663 1.00337 0.78550 0.98087 0.87001 1.45962 1.60220 1.08963 1.18472 1.19942 0.79179 0.87629 0.83472 1.90746 1.43529 1.67723 1.39111 1.20366 0.79374 0.88691 0.83266 1.90775 1.43936 1.68331 1.39271 1.45906 1.59998 1.08630 1.18761 1.20859 0.98243 0.77659 0.97603 1.22161 1.03375 0.97234 0.93586 1.21023 0.90033 0.90929 0.96181 1.44415 1.37469 1.43753 1.08561 1.20226 1.28164 1.04559 0.95439 0.92646 1.27257 1.06803 0.96058 0.97291 1.70905 1.17957 1.42466 1.27194 0.82857 0.72866 0.75095 0.75239 1.22060 1.19945 1.20532 1.20793 0.97838 0.92375 0.85455 1.22320 0.98395 0.96288 0.99823 1.23341 0.85399 0.98860 0.91340 0.87568 1.21813 1.01569 0.96744 1.00758 1.89202 1.27190 1.75019 1.39100 0.91548 0.89476 0.92973 0.88107 0.90904 0.74353 0.74342 0.90829 0.90889 0.88794 0.91743 0.96421 0.93687 0.97791 0.93458 0.91918 0.92467 0.90230 0.90479 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.53 71.98 0.69 -0.88 16 2 C 0.07 0.80 3.92 31.10 0.12 0.92 16 3 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.16 -2.05 6.42 31.61 0.20 -1.84 16 5 C 0.11 1.57 3.34 46.01 0.15 1.72 16 6 H 0.11 1.62 7.55 -2.39 -0.02 1.60 16 7 N -0.68 -12.84 4.40 -439.05 -1.93 -14.77 16 8 C 0.52 12.24 7.89 87.27 0.69 12.93 16 9 O -0.53 -13.89 16.12 -3.21 -0.05 -13.94 16 10 C 0.50 14.01 7.85 87.27 0.69 14.70 16 11 O -0.55 -18.08 16.14 -3.23 -0.05 -18.14 16 12 N -0.68 -18.36 5.07 -443.74 -2.25 -20.61 16 13 C 0.16 5.19 2.41 45.02 0.11 5.30 16 14 C -0.12 -3.80 5.55 30.67 0.17 -3.63 16 15 C 0.14 5.73 6.51 86.37 0.56 6.29 16 16 N -0.62 -30.63 2.83 -698.25 -1.98 -32.60 16 17 C -0.35 -19.59 9.48 84.03 0.80 -18.79 16 18 H 0.06 3.02 7.94 -2.91 -0.02 3.00 16 19 C -0.08 -4.43 4.69 84.86 0.40 -4.03 16 20 N -0.94 -58.05 12.45 21.65 0.27 -57.78 16 21 Si 1.12 50.78 29.98 68.60 2.06 52.84 16 22 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 25 C 0.16 7.80 4.72 86.51 0.41 8.20 16 26 C -0.13 -4.90 5.67 30.82 0.17 -4.73 16 27 C 0.07 0.86 3.87 31.10 0.12 0.98 16 28 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 29 C -0.15 -1.99 8.91 71.98 0.64 -1.34 16 30 O -0.38 -6.13 11.04 -148.98 -1.64 -7.78 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.05 0.69 8.13 -2.39 -0.02 0.67 16 34 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.13 7.69 -2.39 -0.02 1.11 16 36 H 0.42 7.95 6.02 -92.71 -0.56 7.39 16 37 H 0.42 9.74 8.07 -92.70 -0.75 8.99 16 38 H 0.07 2.63 7.58 -2.39 -0.02 2.61 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.25 15.94 6.71 -92.71 -0.62 15.32 16 44 H 0.00 0.21 7.85 -2.39 -0.02 0.19 16 45 H 0.05 2.58 6.38 -2.39 -0.02 2.57 16 46 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 47 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 48 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.06 0.86 6.27 -2.39 -0.01 0.84 16 Total: -1.00 -70.00 395.96 0.13 -69.87 By element: Atomic # 1 Polarization: 27.31 SS G_CDS: -0.21 Total: 27.11 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: 5.92 Total: 15.80 kcal Atomic # 7 Polarization: -119.87 SS G_CDS: -5.89 Total: -125.76 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -1.75 Total: -39.85 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.06 Total: 52.84 kcal Total: -70.00 0.13 -69.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332609418.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.708 kcal (2) G-P(sol) polarization free energy of solvation -70.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds