Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.33176 * 2 1 4 4 C 1.54482 * 110.46335 * 237.68909 * 2 1 3 5 5 C 1.54509 * 104.05948 * 217.14428 * 4 2 1 6 6 H 1.08994 * 110.63198 * 118.70278 * 5 4 2 7 7 N 1.46505 * 110.50866 * 241.35547 * 5 4 2 8 8 C 1.34773 * 119.99761 * 269.64054 * 7 5 4 9 9 O 1.21343 * 120.00513 * 0.02562 * 8 7 5 10 10 C 1.49451 * 119.99652 * 180.02562 * 8 7 5 11 11 O 1.21348 * 120.00210 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99982 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00371 * 179.97438 * 12 10 8 14 14 C 1.53046 * 109.46224 * 275.03379 * 13 12 10 15 15 C 1.53190 * 109.31402 * 178.59770 * 14 13 12 16 16 N 1.46931 * 108.76238 * 54.65369 * 15 14 13 17 17 C 1.36940 * 120.62922 * 126.36472 * 16 15 14 18 18 H 1.07997 * 119.99806 * 207.98316 * 17 16 15 19 19 C 1.38813 * 120.00052 * 27.97852 * 17 16 15 20 20 N 1.31619 * 119.99856 * 17.50724 * 19 17 16 21 21 Si 1.86802 * 119.99893 * 197.50585 * 19 17 16 22 22 H 1.48496 * 109.47256 * 94.06753 * 21 19 17 23 23 H 1.48503 * 109.46852 * 214.06664 * 21 19 17 24 24 H 1.48499 * 109.46963 * 334.06325 * 21 19 17 25 25 C 1.46925 * 118.73924 * 306.38102 * 16 15 14 26 26 C 1.53038 * 109.46566 * 154.97502 * 13 12 10 27 27 C 1.54483 * 104.06563 * 359.97438 * 5 4 2 28 28 H 1.08993 * 110.37143 * 265.15318 * 27 5 4 29 29 C 1.52993 * 110.37349 * 142.81044 * 27 5 4 30 30 O 1.44420 * 110.36994 * 122.25460 * 2 1 3 31 31 H 1.08995 * 109.46742 * 299.20467 * 1 2 3 32 32 H 1.09003 * 109.46580 * 59.19758 * 1 2 3 33 33 H 1.08994 * 109.46968 * 179.19753 * 1 2 3 34 34 H 1.09000 * 110.51130 * 98.50242 * 4 2 1 35 35 H 1.08999 * 110.51198 * 335.78585 * 4 2 1 36 36 H 0.96999 * 119.99723 * 89.64786 * 7 5 4 37 37 H 0.97011 * 119.99783 * 0.02562 * 12 10 8 38 38 H 1.08999 * 109.45900 * 34.99899 * 13 12 10 39 39 H 1.09004 * 109.49576 * 298.56430 * 14 13 12 40 40 H 1.08994 * 109.49544 * 58.65946 * 14 13 12 41 41 H 1.08994 * 109.59941 * 294.86682 * 15 14 13 42 42 H 1.08994 * 109.58739 * 174.43314 * 15 14 13 43 43 H 0.97005 * 119.99857 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.58904 * 293.82063 * 25 16 15 45 45 H 1.09008 * 109.58376 * 173.40063 * 25 16 15 46 46 H 1.09002 * 109.49372 * 301.34064 * 26 13 12 47 47 H 1.09003 * 109.49729 * 61.39863 * 26 13 12 48 48 H 1.09001 * 109.47417 * 60.00120 * 29 27 5 49 49 H 1.08996 * 109.47039 * 180.02562 * 29 27 5 50 50 H 1.09004 * 109.47096 * 300.00144 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0702 -0.7736 -1.2232 5 6 3.3207 -1.5032 -0.6837 6 1 3.2027 -2.5832 -0.7707 7 7 4.5212 -1.0602 -1.3972 8 6 4.9224 -1.7087 -2.5084 9 8 4.2892 -2.6592 -2.9183 10 6 6.1473 -1.2571 -3.2359 11 8 6.7809 -0.3069 -2.8258 12 7 6.5489 -1.9059 -4.3468 13 6 7.7492 -1.4630 -5.0603 14 6 7.3806 -0.3361 -6.0280 15 6 8.6438 0.1482 -6.7466 16 7 9.2966 -1.0040 -7.3831 17 6 9.6037 -0.9827 -8.7174 18 1 9.6485 -1.9058 -9.2760 19 6 9.8575 0.2256 -9.3520 20 7 10.1439 1.2952 -8.6404 21 14 9.7923 0.3335 -11.2157 22 1 8.4403 0.7783 -11.6389 23 1 10.8058 1.3095 -11.6907 24 1 10.0794 -1.0016 -11.7991 25 6 9.6133 -2.1797 -6.5607 26 6 8.3393 -2.6377 -5.8440 27 6 3.3887 -1.0836 0.8015 28 1 4.0525 -0.2278 0.9240 29 6 3.8623 -2.2545 1.6647 30 8 2.0328 -0.7225 1.1450 31 1 -0.3632 0.5014 0.8970 32 1 -0.3632 0.5263 -0.8827 33 1 -0.3633 -1.0275 -0.0144 34 1 2.3451 -0.0833 -2.0207 35 1 1.3314 -1.4928 -1.5770 36 1 5.0272 -0.3002 -1.0697 37 1 6.0426 -2.6658 -4.6745 38 1 8.4847 -1.0992 -4.3427 39 1 6.6639 -0.7062 -6.7612 40 1 6.9389 0.4908 -5.4721 41 1 9.3239 0.6010 -6.0252 42 1 8.3735 0.8809 -7.5069 43 1 10.3209 2.1396 -9.0838 44 1 10.3725 -1.9167 -5.8242 45 1 9.9827 -2.9829 -7.1985 46 1 8.5799 -3.4490 -5.1570 47 1 7.6133 -2.9863 -6.5785 48 1 4.8539 -2.5686 1.3387 49 1 3.9044 -1.9429 2.7083 50 1 3.1657 -3.0866 1.5622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332609435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -100.370268 kcal Electronic energy + Delta-G solvation = -29951.098699 eV Core-core repulsion = 25785.669626 eV Total energy + Delta-G solvation = -4165.429073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.04264 -40.02358 -38.63989 -37.35800 -35.36462 -34.41194 -33.17688 -32.17769 -31.36166 -30.16841 -29.60046 -29.00570 -25.98088 -24.77118 -23.57913 -22.31880 -22.17696 -21.83745 -21.07923 -20.28392 -19.58174 -18.42072 -17.49559 -16.81152 -16.56580 -16.22754 -16.03140 -15.52806 -15.40434 -15.01322 -14.70750 -14.12878 -14.03998 -13.92804 -13.72754 -13.56779 -13.40262 -13.08329 -13.04224 -12.64410 -12.51031 -12.47546 -12.38365 -12.29242 -11.93179 -11.69910 -11.54612 -11.46680 -11.17369 -11.13284 -10.97703 -10.77025 -10.46603 -10.27311 -10.26994 -10.13898 -9.83679 -9.81364 -9.56049 -9.48294 -8.89295 -8.47634 -6.73227 -5.81924 -3.24810 1.34764 2.20759 3.15577 3.26300 3.36449 3.43674 3.44885 3.61665 4.05501 4.12200 4.38630 4.44596 4.47060 4.51930 4.67779 4.82602 4.94317 5.07592 5.10519 5.20183 5.29281 5.35063 5.37950 5.39551 5.46906 5.53678 5.54852 5.59939 5.68626 5.73665 5.74894 5.88720 5.99414 6.14264 6.19987 6.33515 6.40618 6.49706 6.59511 6.65870 6.70688 6.85763 6.87688 7.30091 7.35877 7.61996 7.65273 7.77281 8.01834 8.41470 9.17411 9.80546 10.36831 11.26765 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002030 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.002351 B =13787.209264 C =14276.036772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.072 0.928 4 C -0.164 4.164 5 C 0.114 3.886 6 H 0.110 0.890 7 N -0.697 5.697 8 C 0.511 3.489 9 O -0.518 6.518 10 C 0.502 3.498 11 O -0.521 6.521 12 N -0.690 5.690 13 C 0.148 3.852 14 C -0.148 4.148 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.149 3.851 26 C -0.140 4.140 27 C 0.068 3.932 28 H 0.077 0.923 29 C -0.147 4.147 30 O -0.362 6.362 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.414 0.586 37 H 0.407 0.593 38 H 0.087 0.913 39 H 0.058 0.942 40 H 0.054 0.946 41 H 0.022 0.978 42 H 0.090 0.910 43 H 0.254 0.746 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.070 -5.207 19.187 25.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.090 0.910 4 C -0.203 4.203 5 C 0.008 3.992 6 H 0.128 0.872 7 N -0.352 5.352 8 C 0.292 3.708 9 O -0.393 6.393 10 C 0.282 3.718 11 O -0.397 6.397 12 N -0.341 5.341 13 C 0.045 3.955 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.315 5.315 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.022 3.978 26 C -0.180 4.180 27 C 0.009 3.991 28 H 0.095 0.905 29 C -0.204 4.204 30 O -0.281 6.281 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.251 0.749 37 H 0.243 0.757 38 H 0.105 0.895 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.064 0.936 44 H 0.039 0.961 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.085 0.915 48 H 0.092 0.908 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.112 -5.107 19.299 25.654 hybrid contribution 0.001 0.274 -1.157 1.189 sum -16.110 -4.833 18.142 24.739 Atomic orbital electron populations 1.21808 0.92803 1.03101 1.02664 1.23011 0.95697 0.95496 0.84619 0.90996 1.23468 0.97589 1.00482 0.98757 1.22527 0.84116 1.01378 0.91140 0.87231 1.45769 1.28142 1.34540 1.26732 1.20439 0.85727 0.83107 0.81506 1.90755 1.55836 1.26957 1.65753 1.19941 0.85411 0.84121 0.82337 1.90778 1.55407 1.26879 1.66656 1.46207 1.29035 1.33339 1.25491 1.21252 0.84769 0.95931 0.93504 1.22599 1.01747 0.96814 0.97623 1.20763 0.88725 0.90161 0.95605 1.44116 1.67580 1.13710 1.06114 1.19194 1.42062 0.93187 0.83987 0.91538 1.25066 0.99476 0.97014 0.98075 1.70040 1.49631 1.00659 1.34173 0.86267 0.77394 0.77480 0.85571 1.21469 1.21770 1.20363 1.20845 0.92169 0.91217 0.93609 1.22369 1.00736 0.96052 0.98849 1.23167 0.85464 0.98142 0.92277 0.90526 1.21814 1.01642 0.96900 1.00040 1.89207 1.26188 1.74606 1.38121 0.91699 0.90936 0.91638 0.89646 0.89422 0.74925 0.75709 0.89527 0.92363 0.92770 0.95987 0.89143 0.93563 0.96063 0.92122 0.92361 0.91548 0.90772 0.91306 0.91384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.53 37.16 0.35 -0.53 16 2 C 0.07 0.51 3.92 -25.95 -0.10 0.41 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 4 C -0.16 -1.30 6.42 -25.16 -0.16 -1.46 16 5 C 0.11 0.96 3.02 -66.36 -0.20 0.76 16 6 H 0.11 1.03 7.28 -51.93 -0.38 0.65 16 7 N -0.70 -6.67 5.04 -52.71 -0.27 -6.93 16 8 C 0.51 6.34 7.89 -11.59 -0.09 6.24 16 9 O -0.52 -7.29 16.12 5.50 0.09 -7.20 16 10 C 0.50 7.22 7.85 -11.58 -0.09 7.13 16 11 O -0.52 -8.64 16.14 5.50 0.09 -8.55 16 12 N -0.69 -9.86 5.07 -54.20 -0.27 -10.14 16 13 C 0.15 2.48 2.42 -67.89 -0.16 2.32 16 14 C -0.15 -2.85 5.65 -26.61 -0.15 -3.00 16 15 C 0.17 4.11 5.31 -3.71 -0.02 4.10 16 16 N -0.59 -14.47 2.99 -172.32 -0.52 -14.98 16 17 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 18 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 19 C 0.00 0.07 4.90 -17.43 -0.09 -0.02 16 20 N -0.90 -25.95 11.22 55.49 0.62 -25.32 16 21 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.15 2.97 6.52 -3.72 -0.02 2.95 16 26 C -0.14 -2.27 5.55 -26.62 -0.15 -2.42 16 27 C 0.07 0.51 3.64 -25.96 -0.09 0.41 16 28 H 0.08 0.51 7.76 -51.93 -0.40 0.11 16 29 C -0.15 -0.96 9.51 37.15 0.35 -0.60 16 30 O -0.36 -3.20 11.04 -35.23 -0.39 -3.59 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.41 8.13 -51.93 -0.42 -0.02 16 34 H 0.08 0.71 7.96 -51.93 -0.41 0.29 16 35 H 0.09 0.68 7.86 -51.93 -0.41 0.28 16 36 H 0.41 3.56 7.86 -40.82 -0.32 3.24 16 37 H 0.41 5.22 8.08 -40.82 -0.33 4.89 16 38 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.09 2.40 6.06 -51.93 -0.31 2.09 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -31.18 400.66 -8.82 -40.00 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.42 Total: 4.95 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -0.77 Total: 9.30 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: -0.43 Total: -57.38 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.21 Total: -19.35 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.18 -8.82 -40.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332609435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.366 kcal (2) G-P(sol) polarization free energy of solvation -31.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds