Wall clock time and date at job start Sat Apr 11 2020 05:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08996 * 110.33176 * 2 1 4 4 C 1.54482 * 110.46335 * 237.68909 * 2 1 3 5 5 C 1.54509 * 104.05948 * 217.14428 * 4 2 1 6 6 H 1.08994 * 110.63198 * 118.70278 * 5 4 2 7 7 N 1.46505 * 110.50866 * 241.35547 * 5 4 2 8 8 C 1.34773 * 119.99761 * 269.64054 * 7 5 4 9 9 O 1.21343 * 120.00513 * 0.02562 * 8 7 5 10 10 C 1.49451 * 119.99652 * 180.02562 * 8 7 5 11 11 O 1.21348 * 120.00210 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99982 * 179.97438 * 10 8 7 13 13 C 1.46493 * 120.00371 * 179.97438 * 12 10 8 14 14 C 1.53046 * 109.46224 * 275.03379 * 13 12 10 15 15 C 1.53190 * 109.31402 * 178.59770 * 14 13 12 16 16 N 1.46931 * 108.76238 * 54.65369 * 15 14 13 17 17 C 1.36940 * 120.62922 * 126.36472 * 16 15 14 18 18 H 1.07997 * 119.99806 * 207.98316 * 17 16 15 19 19 C 1.38813 * 120.00052 * 27.97852 * 17 16 15 20 20 N 1.31619 * 119.99856 * 17.50724 * 19 17 16 21 21 Si 1.86802 * 119.99893 * 197.50585 * 19 17 16 22 22 H 1.48496 * 109.47256 * 94.06753 * 21 19 17 23 23 H 1.48503 * 109.46852 * 214.06664 * 21 19 17 24 24 H 1.48499 * 109.46963 * 334.06325 * 21 19 17 25 25 C 1.46925 * 118.73924 * 306.38102 * 16 15 14 26 26 C 1.53038 * 109.46566 * 154.97502 * 13 12 10 27 27 C 1.54483 * 104.06563 * 359.97438 * 5 4 2 28 28 H 1.08993 * 110.37143 * 265.15318 * 27 5 4 29 29 C 1.52993 * 110.37349 * 142.81044 * 27 5 4 30 30 O 1.44420 * 110.36994 * 122.25460 * 2 1 3 31 31 H 1.08995 * 109.46742 * 299.20467 * 1 2 3 32 32 H 1.09003 * 109.46580 * 59.19758 * 1 2 3 33 33 H 1.08994 * 109.46968 * 179.19753 * 1 2 3 34 34 H 1.09000 * 110.51130 * 98.50242 * 4 2 1 35 35 H 1.08999 * 110.51198 * 335.78585 * 4 2 1 36 36 H 0.96999 * 119.99723 * 89.64786 * 7 5 4 37 37 H 0.97011 * 119.99783 * 0.02562 * 12 10 8 38 38 H 1.08999 * 109.45900 * 34.99899 * 13 12 10 39 39 H 1.09004 * 109.49576 * 298.56430 * 14 13 12 40 40 H 1.08994 * 109.49544 * 58.65946 * 14 13 12 41 41 H 1.08994 * 109.59941 * 294.86682 * 15 14 13 42 42 H 1.08994 * 109.58739 * 174.43314 * 15 14 13 43 43 H 0.97005 * 119.99857 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.58904 * 293.82063 * 25 16 15 45 45 H 1.09008 * 109.58376 * 173.40063 * 25 16 15 46 46 H 1.09002 * 109.49372 * 301.34064 * 26 13 12 47 47 H 1.09003 * 109.49729 * 61.39863 * 26 13 12 48 48 H 1.09001 * 109.47417 * 60.00120 * 29 27 5 49 49 H 1.08996 * 109.47039 * 180.02562 * 29 27 5 50 50 H 1.09004 * 109.47096 * 300.00144 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0702 -0.7736 -1.2232 5 6 3.3207 -1.5032 -0.6837 6 1 3.2027 -2.5832 -0.7707 7 7 4.5212 -1.0602 -1.3972 8 6 4.9224 -1.7087 -2.5084 9 8 4.2892 -2.6592 -2.9183 10 6 6.1473 -1.2571 -3.2359 11 8 6.7809 -0.3069 -2.8258 12 7 6.5489 -1.9059 -4.3468 13 6 7.7492 -1.4630 -5.0603 14 6 7.3806 -0.3361 -6.0280 15 6 8.6438 0.1482 -6.7466 16 7 9.2966 -1.0040 -7.3831 17 6 9.6037 -0.9827 -8.7174 18 1 9.6485 -1.9058 -9.2760 19 6 9.8575 0.2256 -9.3520 20 7 10.1439 1.2952 -8.6404 21 14 9.7923 0.3335 -11.2157 22 1 8.4403 0.7783 -11.6389 23 1 10.8058 1.3095 -11.6907 24 1 10.0794 -1.0016 -11.7991 25 6 9.6133 -2.1797 -6.5607 26 6 8.3393 -2.6377 -5.8440 27 6 3.3887 -1.0836 0.8015 28 1 4.0525 -0.2278 0.9240 29 6 3.8623 -2.2545 1.6647 30 8 2.0328 -0.7225 1.1450 31 1 -0.3632 0.5014 0.8970 32 1 -0.3632 0.5263 -0.8827 33 1 -0.3633 -1.0275 -0.0144 34 1 2.3451 -0.0833 -2.0207 35 1 1.3314 -1.4928 -1.5770 36 1 5.0272 -0.3002 -1.0697 37 1 6.0426 -2.6658 -4.6745 38 1 8.4847 -1.0992 -4.3427 39 1 6.6639 -0.7062 -6.7612 40 1 6.9389 0.4908 -5.4721 41 1 9.3239 0.6010 -6.0252 42 1 8.3735 0.8809 -7.5069 43 1 10.3209 2.1396 -9.0838 44 1 10.3725 -1.9167 -5.8242 45 1 9.9827 -2.9829 -7.1985 46 1 8.5799 -3.4490 -5.1570 47 1 7.6133 -2.9863 -6.5785 48 1 4.8539 -2.5686 1.3387 49 1 3.9044 -1.9429 2.7083 50 1 3.1657 -3.0866 1.5622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332609435.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:33 Heat of formation + Delta-G solvation = -122.376309 kcal Electronic energy + Delta-G solvation = -29952.052952 eV Core-core repulsion = 25785.669626 eV Total energy + Delta-G solvation = -4166.383326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -42.00315 -40.90830 -39.75881 -38.83790 -36.46273 -35.71692 -33.92744 -33.72381 -32.08088 -31.82075 -31.29294 -29.59694 -27.43755 -26.06023 -24.56767 -23.94031 -23.25266 -22.80066 -21.83704 -21.41893 -21.02256 -19.60291 -18.69792 -18.31397 -17.57265 -17.13611 -16.89557 -16.79274 -16.50193 -16.18432 -15.89413 -15.52404 -15.36454 -15.10623 -14.97496 -14.73963 -14.57342 -14.26377 -14.11220 -13.92792 -13.68962 -13.22193 -13.08007 -13.03655 -12.93193 -12.88200 -12.83862 -12.63276 -12.61727 -12.43448 -12.14922 -12.06463 -12.04155 -11.85942 -11.73441 -11.58418 -11.40876 -10.87980 -10.74263 -10.59495 -10.36380 -10.18530 -8.71899 -7.88012 -5.33436 0.27511 1.19311 1.47780 1.49340 1.58282 2.07357 2.45966 2.51564 2.80369 3.27636 3.35844 3.44441 3.49825 3.66490 3.81054 3.82075 3.93164 4.01332 4.10002 4.28119 4.28962 4.39532 4.45113 4.48724 4.62042 4.64343 4.68600 4.73004 4.81343 4.81924 4.88104 4.97807 4.98758 5.03137 5.07377 5.10736 5.13079 5.19913 5.27005 5.29763 5.32969 5.45391 5.64228 5.69477 5.78510 5.89031 6.29551 6.38660 6.66834 6.89989 7.13589 7.84331 8.36226 9.19036 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.002030 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.002351 B =13787.209264 C =14276.036772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.079 0.921 4 C -0.162 4.162 5 C 0.113 3.887 6 H 0.103 0.897 7 N -0.681 5.681 8 C 0.519 3.481 9 O -0.534 6.534 10 C 0.504 3.496 11 O -0.544 6.544 12 N -0.681 5.681 13 C 0.160 3.840 14 C -0.132 4.132 15 C 0.182 3.818 16 N -0.610 5.610 17 C -0.260 4.260 18 H 0.072 0.928 19 C -0.053 4.053 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.265 1.265 25 C 0.142 3.858 26 C -0.125 4.125 27 C 0.069 3.931 28 H 0.087 0.913 29 C -0.146 4.146 30 O -0.377 6.377 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.420 0.580 37 H 0.418 0.582 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.053 0.947 41 H -0.004 1.004 42 H 0.056 0.944 43 H 0.249 0.751 44 H 0.018 0.982 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.350 -6.634 19.877 27.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.010 3.990 3 H 0.097 0.903 4 C -0.201 4.201 5 C 0.008 3.992 6 H 0.121 0.879 7 N -0.335 5.335 8 C 0.300 3.700 9 O -0.411 6.411 10 C 0.284 3.716 11 O -0.422 6.422 12 N -0.333 5.333 13 C 0.056 3.944 14 C -0.173 4.173 15 C 0.056 3.944 16 N -0.334 5.334 17 C -0.390 4.390 18 H 0.090 0.910 19 C -0.249 4.249 20 N -0.582 5.582 21 Si 0.795 3.205 22 H -0.214 1.214 23 H -0.224 1.224 24 H -0.190 1.190 25 C 0.017 3.983 26 C -0.164 4.164 27 C 0.011 3.989 28 H 0.105 0.895 29 C -0.203 4.203 30 O -0.296 6.296 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.258 0.742 37 H 0.256 0.744 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.014 0.986 42 H 0.074 0.926 43 H 0.058 0.942 44 H 0.036 0.964 45 H 0.086 0.914 46 H 0.111 0.889 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.093 0.907 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -17.419 -6.569 20.025 27.342 hybrid contribution 0.407 0.718 -1.289 1.531 sum -17.012 -5.851 18.736 25.975 Atomic orbital electron populations 1.21820 0.91920 1.03159 1.03346 1.23115 0.96471 0.95541 0.83832 0.90307 1.23444 0.97253 1.00428 0.98951 1.22613 0.83694 1.01048 0.91801 0.87939 1.45720 1.28187 1.34001 1.25618 1.19976 0.84938 0.83123 0.81994 1.90759 1.56150 1.27775 1.66417 1.20283 0.85701 0.83496 0.82110 1.90776 1.56269 1.27895 1.67250 1.45949 1.28360 1.33627 1.25374 1.20900 0.85415 0.95336 0.92778 1.22341 0.99255 0.97837 0.97827 1.20485 0.90004 0.89742 0.94217 1.44367 1.68042 1.14864 1.06100 1.19554 1.40751 0.93327 0.85395 0.91008 1.25833 0.99979 0.96885 1.02156 1.70197 1.51386 1.00971 1.35670 0.85255 0.76878 0.77648 0.80687 1.21444 1.22414 1.18968 1.21034 0.94140 0.89766 0.93405 1.22180 0.98711 0.96386 0.99170 1.23231 0.85297 0.98866 0.91506 0.89515 1.21823 1.01762 0.96469 1.00239 1.89202 1.26768 1.74869 1.38778 0.91496 0.89779 0.91910 0.89930 0.89364 0.74188 0.74419 0.90858 0.92180 0.92869 0.98578 0.92593 0.94152 0.96449 0.91405 0.88893 0.90838 0.90298 0.90720 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.53 71.99 0.69 -0.85 16 2 C 0.07 0.89 3.92 31.10 0.12 1.01 16 3 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 4 C -0.16 -2.32 6.42 31.61 0.20 -2.12 16 5 C 0.11 1.74 3.02 46.01 0.14 1.87 16 6 H 0.10 1.78 7.28 -2.39 -0.02 1.76 16 7 N -0.68 -11.89 5.04 -439.06 -2.21 -14.10 16 8 C 0.52 11.97 7.89 87.27 0.69 12.66 16 9 O -0.53 -14.04 16.12 -3.23 -0.05 -14.09 16 10 C 0.50 13.68 7.85 87.27 0.69 14.36 16 11 O -0.54 -17.49 16.14 -3.24 -0.05 -17.54 16 12 N -0.68 -18.12 5.07 -443.75 -2.25 -20.37 16 13 C 0.16 5.13 2.42 45.02 0.11 5.24 16 14 C -0.13 -5.08 5.65 30.67 0.17 -4.91 16 15 C 0.18 8.86 5.31 86.36 0.46 9.32 16 16 N -0.61 -29.95 2.99 -699.11 -2.09 -32.04 16 17 C -0.26 -14.01 9.58 84.03 0.81 -13.20 16 18 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 19 C -0.05 -2.96 4.90 84.86 0.42 -2.54 16 20 N -0.94 -55.58 11.22 21.65 0.24 -55.34 16 21 Si 0.97 44.56 29.59 68.60 2.03 46.59 16 22 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 23 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 24 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 25 C 0.14 5.53 6.52 86.36 0.56 6.10 16 26 C -0.13 -3.74 5.55 30.67 0.17 -3.57 16 27 C 0.07 0.92 3.64 31.10 0.11 1.03 16 28 H 0.09 0.98 7.76 -2.39 -0.02 0.96 16 29 C -0.15 -1.67 9.51 71.98 0.68 -0.98 16 30 O -0.38 -6.08 11.04 -148.98 -1.64 -7.73 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.70 8.13 -2.39 -0.02 0.68 16 34 H 0.08 1.24 7.96 -2.39 -0.02 1.22 16 35 H 0.09 1.26 7.86 -2.39 -0.02 1.24 16 36 H 0.42 6.50 7.86 -92.71 -0.73 5.77 16 37 H 0.42 9.61 8.08 -92.70 -0.75 8.86 16 38 H 0.07 2.61 7.58 -2.39 -0.02 2.59 16 39 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.06 3.09 6.06 -2.39 -0.01 3.08 16 43 H 0.25 14.37 8.31 -92.70 -0.77 13.60 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.07 2.51 7.93 -2.38 -0.02 2.49 16 46 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 49 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -67.50 400.66 -0.54 -68.05 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.53 Total: 23.15 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 6.02 Total: 23.43 kcal Atomic # 7 Polarization: -115.54 SS G_CDS: -6.31 Total: -121.85 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: -1.75 Total: -39.36 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -67.50 -0.54 -68.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332609435.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.329 kcal (2) G-P(sol) polarization free energy of solvation -67.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds