Wall clock time and date at job start Sat Apr 11 2020 05:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.67577 * 2 1 4 4 C 1.54994 * 110.61705 * 237.02958 * 2 1 3 5 5 C 1.54822 * 102.09113 * 204.47846 * 4 2 1 6 6 H 1.09001 * 110.48447 * 139.69396 * 5 4 2 7 7 N 1.46498 * 110.48454 * 262.20671 * 5 4 2 8 8 C 1.34779 * 120.00118 * 273.54508 * 7 5 4 9 9 O 1.21349 * 119.99912 * 0.02562 * 8 7 5 10 10 C 1.49451 * 120.00197 * 180.02562 * 8 7 5 11 11 O 1.21350 * 119.99917 * 353.52497 * 10 8 7 12 12 N 1.34770 * 120.00305 * 173.52237 * 10 8 7 13 13 C 1.47083 * 120.88647 * 173.51840 * 12 10 8 14 14 C 1.53230 * 108.52043 * 231.16456 * 13 12 10 15 15 N 1.46897 * 109.34245 * 306.16373 * 14 13 12 16 16 C 1.46905 * 110.99975 * 187.25255 * 15 14 13 17 17 C 1.50698 * 109.47251 * 301.69492 * 16 15 14 18 18 H 1.07993 * 119.99989 * 354.96564 * 17 16 15 19 19 C 1.37881 * 119.99399 * 174.96517 * 17 16 15 20 20 N 1.31509 * 120.00527 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99532 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47384 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47320 * 119.99937 * 21 19 17 24 24 H 1.48506 * 109.47126 * 240.00091 * 21 19 17 25 25 C 1.46908 * 111.26461 * 63.11003 * 15 14 13 26 26 C 1.47087 * 120.87989 * 353.49729 * 12 10 8 27 27 C 1.54096 * 104.18545 * 20.88310 * 5 4 2 28 28 H 1.08999 * 109.87913 * 242.60623 * 27 5 4 29 29 C 1.53000 * 109.87936 * 121.45357 * 27 5 4 30 30 O 1.43742 * 107.29874 * 2.02713 * 27 5 4 31 31 H 1.09001 * 109.47587 * 182.96872 * 1 2 3 32 32 H 1.09006 * 109.47086 * 302.97111 * 1 2 3 33 33 H 1.08997 * 109.46819 * 62.96779 * 1 2 3 34 34 H 1.09001 * 110.90542 * 86.28236 * 4 2 1 35 35 H 1.08992 * 110.91236 * 322.67392 * 4 2 1 36 36 H 0.97003 * 120.00139 * 93.55111 * 7 5 4 37 37 H 1.09007 * 109.62260 * 350.87407 * 13 12 10 38 38 H 1.08995 * 109.62486 * 111.44843 * 13 12 10 39 39 H 1.09001 * 109.49710 * 66.12840 * 14 13 12 40 40 H 1.09001 * 109.48997 * 186.20868 * 14 13 12 41 41 H 1.08999 * 109.46909 * 61.69897 * 16 15 14 42 42 H 1.08996 * 109.46763 * 181.69306 * 16 15 14 43 43 H 0.97001 * 120.00321 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.48781 * 176.93522 * 25 15 14 45 45 H 1.08996 * 109.49394 * 56.85668 * 25 15 14 46 46 H 1.08998 * 109.62564 * 248.55035 * 26 12 10 47 47 H 1.08998 * 109.62688 * 9.12624 * 26 12 10 48 48 H 1.09003 * 109.46579 * 59.99696 * 29 27 5 49 49 H 1.08999 * 109.47323 * 179.97438 * 29 27 5 50 50 H 1.09000 * 109.47089 * 299.99948 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7895 -1.2170 5 6 3.4795 -1.2169 -0.7233 6 1 3.6984 -2.2385 -1.0339 7 7 4.5025 -0.2982 -1.2290 8 6 5.0523 -0.5036 -2.4423 9 8 4.6995 -1.4492 -3.1160 10 6 6.0963 0.4333 -2.9579 11 8 6.3651 1.4421 -2.3393 12 7 6.7394 0.1577 -4.1098 13 6 7.6660 1.1304 -4.7085 14 6 7.2807 1.3288 -6.1783 15 7 7.2323 0.0229 -6.8491 16 6 7.0354 0.1815 -8.2963 17 6 5.7582 0.9402 -8.5493 18 1 5.1122 1.2005 -7.7240 19 6 5.4145 1.3019 -9.8347 20 7 6.2009 0.9845 -10.8398 21 14 3.8316 2.2430 -10.1483 22 1 3.1300 2.4749 -8.8602 23 1 4.1489 3.5481 -10.7817 24 1 2.9572 1.4535 -11.0525 25 6 6.1927 -0.8367 -6.2675 26 6 6.5334 -1.1240 -4.8014 27 6 3.3838 -1.1255 0.8120 28 1 4.0852 -0.3783 1.1832 29 6 3.6933 -2.4884 1.4346 30 8 2.0384 -0.7352 1.1339 31 1 -0.3634 -1.0263 0.0532 32 1 -0.3633 0.5593 0.8622 33 1 -0.3633 0.4671 -0.9154 34 1 2.1509 -0.1478 -2.0949 35 1 1.4550 -1.6607 -1.4257 36 1 4.7843 0.4578 -0.6905 37 1 7.5920 2.0804 -4.1790 38 1 8.6859 0.7512 -4.6453 39 1 6.3015 1.8043 -6.2366 40 1 8.0222 1.9613 -6.6664 41 1 7.8754 0.7327 -8.7190 42 1 6.9733 -0.8010 -8.7642 43 1 5.9592 1.2393 -11.7440 44 1 6.1452 -1.7749 -6.8205 45 1 5.2287 -0.3312 -6.3246 46 1 7.4445 -1.7198 -4.7471 47 1 5.7107 -1.6645 -4.3334 48 1 4.7011 -2.7953 1.1545 49 1 3.6242 -2.4161 2.5200 50 1 2.9755 -3.2246 1.0727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333192247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:48 Heat of formation + Delta-G solvation = -87.691005 kcal Electronic energy + Delta-G solvation = -30696.993909 eV Core-core repulsion = 26532.114650 eV Total energy + Delta-G solvation = -4164.879258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19729 -40.11931 -38.57943 -37.62701 -35.36637 -34.26450 -33.12860 -32.32922 -31.45214 -30.71245 -28.96835 -28.34819 -25.97510 -24.94348 -23.80081 -23.00637 -22.06707 -22.05648 -21.20200 -20.53724 -19.29574 -17.81864 -17.39931 -16.78289 -16.37549 -16.23484 -15.91114 -15.61568 -15.35850 -14.87328 -14.81783 -14.61019 -14.41342 -14.00532 -13.65565 -13.60913 -13.53631 -13.31354 -13.02632 -12.70368 -12.55556 -12.43090 -12.36398 -12.24625 -11.88205 -11.76586 -11.52228 -11.44592 -11.17107 -11.16444 -11.05955 -10.82653 -10.70517 -10.60795 -10.27043 -10.13435 -9.96167 -9.71231 -9.58400 -9.00122 -8.57480 -8.47876 -7.26890 -6.07774 -4.17087 1.32635 2.19406 3.12947 3.23132 3.26420 3.31546 3.35094 3.45913 4.05126 4.19487 4.23501 4.36734 4.43772 4.54815 4.73464 4.85528 4.95795 4.96359 5.13120 5.16181 5.22618 5.27848 5.38126 5.42791 5.46028 5.52066 5.60716 5.63139 5.65916 5.71006 5.78723 5.80009 5.82444 5.91871 5.99894 6.31967 6.44745 6.52302 6.56426 6.62369 6.71866 6.83526 7.19388 7.36090 7.46911 7.64916 7.84243 7.92969 7.96820 8.18843 8.22954 8.92950 9.50275 10.97357 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002744 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.765157 B =10202.526681 C =11381.703095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.072 0.928 4 C -0.161 4.161 5 C 0.111 3.889 6 H 0.112 0.888 7 N -0.696 5.696 8 C 0.515 3.485 9 O -0.500 6.500 10 C 0.503 3.497 11 O -0.535 6.535 12 N -0.566 5.566 13 C 0.111 3.889 14 C 0.052 3.948 15 N -0.543 5.543 16 C 0.187 3.813 17 C -0.551 4.551 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.889 5.889 21 Si 0.888 3.112 22 H -0.275 1.275 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.053 3.947 26 C 0.053 3.947 27 C 0.070 3.930 28 H 0.076 0.924 29 C -0.150 4.150 30 O -0.366 6.366 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.412 0.588 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.029 0.971 43 H 0.262 0.738 44 H 0.078 0.922 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.149 0.851 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.405 -4.933 23.661 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.200 4.200 5 C 0.007 3.993 6 H 0.129 0.871 7 N -0.350 5.350 8 C 0.297 3.703 9 O -0.376 6.376 10 C 0.285 3.715 11 O -0.414 6.414 12 N -0.298 5.298 13 C -0.011 4.011 14 C -0.077 4.077 15 N -0.267 5.267 16 C 0.062 3.938 17 C -0.590 4.590 18 H 0.074 0.926 19 C -0.137 4.137 20 N -0.528 5.528 21 Si 0.716 3.284 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.076 4.076 26 C -0.068 4.068 27 C 0.012 3.988 28 H 0.094 0.906 29 C -0.207 4.207 30 O -0.286 6.286 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.250 0.750 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.100 0.900 41 H 0.054 0.946 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.085 0.915 47 H 0.165 0.835 48 H 0.091 0.909 49 H 0.087 0.913 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.139 -5.356 23.553 24.695 hybrid contribution -1.355 1.451 -0.672 2.096 sum -6.494 -3.905 22.881 24.103 Atomic orbital electron populations 1.21770 0.92734 1.03142 1.02662 1.23193 0.95617 0.95337 0.84580 0.90984 1.23628 0.95512 1.01813 0.99056 1.22526 0.87741 0.95456 0.93614 0.87059 1.45890 1.40222 1.30721 1.18181 1.20422 0.82682 0.85326 0.81849 1.90376 1.61598 1.30765 1.54860 1.19816 0.82815 0.86419 0.82497 1.90729 1.65499 1.27850 1.57307 1.48124 1.41434 1.19013 1.21241 1.22058 0.92375 0.92451 0.94255 1.22223 1.01348 0.92927 0.91251 1.62534 1.45270 1.11988 1.06926 1.19771 0.96014 0.97035 0.81007 1.21766 1.07377 1.36877 0.92938 0.92602 1.24953 0.96797 0.95739 0.96215 1.69944 1.37085 1.46386 0.99390 0.86599 0.83715 0.79808 0.78263 1.19932 1.20880 1.20866 1.22201 0.94521 0.98377 0.92519 1.23473 1.05204 0.83980 0.94167 1.22933 0.85644 0.97988 0.92240 0.90632 1.21909 1.02212 0.94842 1.01746 1.88941 1.27075 1.73537 1.39013 0.91577 0.91776 0.90866 0.89385 0.89055 0.75041 0.89350 0.90649 0.93792 0.90024 0.94578 0.95266 0.92801 0.90340 0.94147 0.91463 0.83481 0.90890 0.91336 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.65 37.16 0.36 -0.64 16 2 C 0.07 0.57 3.98 -25.68 -0.10 0.46 16 3 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.16 -1.39 6.31 -24.72 -0.16 -1.54 16 5 C 0.11 0.96 2.97 -66.40 -0.20 0.76 16 6 H 0.11 1.00 7.23 -51.93 -0.38 0.62 16 7 N -0.70 -6.86 5.10 -52.75 -0.27 -7.13 16 8 C 0.51 6.70 7.78 -11.58 -0.09 6.61 16 9 O -0.50 -7.25 12.82 5.50 0.07 -7.18 16 10 C 0.50 7.61 7.75 -11.59 -0.09 7.52 16 11 O -0.54 -8.74 15.98 5.50 0.09 -8.65 16 12 N -0.57 -9.03 3.01 -172.97 -0.52 -9.55 16 13 C 0.11 1.77 6.58 -3.60 -0.02 1.74 16 14 C 0.05 0.99 5.13 -3.71 -0.02 0.97 16 15 N -0.54 -11.35 4.83 -235.77 -1.14 -12.49 16 16 C 0.19 4.72 5.12 -4.97 -0.03 4.69 16 17 C -0.55 -14.96 7.75 -34.44 -0.27 -15.23 16 18 H 0.06 1.53 5.88 -52.49 -0.31 1.23 16 19 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 20 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 C 0.05 1.02 5.26 -3.70 -0.02 1.00 16 26 C 0.05 0.83 6.46 -3.60 -0.02 0.81 16 27 C 0.07 0.53 3.84 -26.16 -0.10 0.43 16 28 H 0.08 0.52 7.60 -51.93 -0.39 0.13 16 29 C -0.15 -0.94 9.36 37.16 0.35 -0.59 16 30 O -0.37 -3.35 10.89 -35.23 -0.38 -3.73 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.86 8.06 -51.93 -0.42 0.45 16 35 H 0.09 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.41 3.65 7.77 -40.82 -0.32 3.33 16 37 H 0.09 1.37 7.11 -51.93 -0.37 1.00 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.94 6.73 -51.93 -0.35 0.59 16 40 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.03 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 44 H 0.08 1.48 8.04 -51.92 -0.42 1.06 16 45 H 0.04 0.87 6.98 -51.93 -0.36 0.50 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.15 2.28 3.80 -56.63 -0.22 2.07 16 48 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -30.90 393.33 -9.16 -40.06 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -8.15 Total: 2.77 kcal Atomic # 6 Polarization: 9.24 SS G_CDS: -0.50 Total: 8.74 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -1.19 Total: -54.32 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.23 Total: -19.56 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.90 -9.16 -40.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.626 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds