Wall clock time and date at job start Sat Apr 11 2020 05:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.67577 * 2 1 4 4 C 1.54994 * 110.61705 * 237.02958 * 2 1 3 5 5 C 1.54822 * 102.09113 * 204.47846 * 4 2 1 6 6 H 1.09001 * 110.48447 * 139.69396 * 5 4 2 7 7 N 1.46498 * 110.48454 * 262.20671 * 5 4 2 8 8 C 1.34779 * 120.00118 * 273.54508 * 7 5 4 9 9 O 1.21349 * 119.99912 * 0.02562 * 8 7 5 10 10 C 1.49451 * 120.00197 * 180.02562 * 8 7 5 11 11 O 1.21350 * 119.99917 * 353.52497 * 10 8 7 12 12 N 1.34770 * 120.00305 * 173.52237 * 10 8 7 13 13 C 1.47083 * 120.88647 * 173.51840 * 12 10 8 14 14 C 1.53230 * 108.52043 * 231.16456 * 13 12 10 15 15 N 1.46897 * 109.34245 * 306.16373 * 14 13 12 16 16 C 1.46905 * 110.99975 * 187.25255 * 15 14 13 17 17 C 1.50698 * 109.47251 * 301.69492 * 16 15 14 18 18 H 1.07993 * 119.99989 * 354.96564 * 17 16 15 19 19 C 1.37881 * 119.99399 * 174.96517 * 17 16 15 20 20 N 1.31509 * 120.00527 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99532 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.47384 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47320 * 119.99937 * 21 19 17 24 24 H 1.48506 * 109.47126 * 240.00091 * 21 19 17 25 25 C 1.46908 * 111.26461 * 63.11003 * 15 14 13 26 26 C 1.47087 * 120.87989 * 353.49729 * 12 10 8 27 27 C 1.54096 * 104.18545 * 20.88310 * 5 4 2 28 28 H 1.08999 * 109.87913 * 242.60623 * 27 5 4 29 29 C 1.53000 * 109.87936 * 121.45357 * 27 5 4 30 30 O 1.43742 * 107.29874 * 2.02713 * 27 5 4 31 31 H 1.09001 * 109.47587 * 182.96872 * 1 2 3 32 32 H 1.09006 * 109.47086 * 302.97111 * 1 2 3 33 33 H 1.08997 * 109.46819 * 62.96779 * 1 2 3 34 34 H 1.09001 * 110.90542 * 86.28236 * 4 2 1 35 35 H 1.08992 * 110.91236 * 322.67392 * 4 2 1 36 36 H 0.97003 * 120.00139 * 93.55111 * 7 5 4 37 37 H 1.09007 * 109.62260 * 350.87407 * 13 12 10 38 38 H 1.08995 * 109.62486 * 111.44843 * 13 12 10 39 39 H 1.09001 * 109.49710 * 66.12840 * 14 13 12 40 40 H 1.09001 * 109.48997 * 186.20868 * 14 13 12 41 41 H 1.08999 * 109.46909 * 61.69897 * 16 15 14 42 42 H 1.08996 * 109.46763 * 181.69306 * 16 15 14 43 43 H 0.97001 * 120.00321 * 180.02562 * 20 19 17 44 44 H 1.09007 * 109.48781 * 176.93522 * 25 15 14 45 45 H 1.08996 * 109.49394 * 56.85668 * 25 15 14 46 46 H 1.08998 * 109.62564 * 248.55035 * 26 12 10 47 47 H 1.08998 * 109.62688 * 9.12624 * 26 12 10 48 48 H 1.09003 * 109.46579 * 59.99696 * 29 27 5 49 49 H 1.08999 * 109.47323 * 179.97438 * 29 27 5 50 50 H 1.09000 * 109.47089 * 299.99948 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7895 -1.2170 5 6 3.4795 -1.2169 -0.7233 6 1 3.6984 -2.2385 -1.0339 7 7 4.5025 -0.2982 -1.2290 8 6 5.0523 -0.5036 -2.4423 9 8 4.6995 -1.4492 -3.1160 10 6 6.0963 0.4333 -2.9579 11 8 6.3651 1.4421 -2.3393 12 7 6.7394 0.1577 -4.1098 13 6 7.6660 1.1304 -4.7085 14 6 7.2807 1.3288 -6.1783 15 7 7.2323 0.0229 -6.8491 16 6 7.0354 0.1815 -8.2963 17 6 5.7582 0.9402 -8.5493 18 1 5.1122 1.2005 -7.7240 19 6 5.4145 1.3019 -9.8347 20 7 6.2009 0.9845 -10.8398 21 14 3.8316 2.2430 -10.1483 22 1 3.1300 2.4749 -8.8602 23 1 4.1489 3.5481 -10.7817 24 1 2.9572 1.4535 -11.0525 25 6 6.1927 -0.8367 -6.2675 26 6 6.5334 -1.1240 -4.8014 27 6 3.3838 -1.1255 0.8120 28 1 4.0852 -0.3783 1.1832 29 6 3.6933 -2.4884 1.4346 30 8 2.0384 -0.7352 1.1339 31 1 -0.3634 -1.0263 0.0532 32 1 -0.3633 0.5593 0.8622 33 1 -0.3633 0.4671 -0.9154 34 1 2.1509 -0.1478 -2.0949 35 1 1.4550 -1.6607 -1.4257 36 1 4.7843 0.4578 -0.6905 37 1 7.5920 2.0804 -4.1790 38 1 8.6859 0.7512 -4.6453 39 1 6.3015 1.8043 -6.2366 40 1 8.0222 1.9613 -6.6664 41 1 7.8754 0.7327 -8.7190 42 1 6.9733 -0.8010 -8.7642 43 1 5.9592 1.2393 -11.7440 44 1 6.1452 -1.7749 -6.8205 45 1 5.2287 -0.3312 -6.3246 46 1 7.4445 -1.7198 -4.7471 47 1 5.7107 -1.6645 -4.3334 48 1 4.7011 -2.7953 1.1545 49 1 3.6242 -2.4161 2.5200 50 1 2.9755 -3.2246 1.0727 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333192247.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:47 Heat of formation + Delta-G solvation = -110.428455 kcal Electronic energy + Delta-G solvation = -30697.979878 eV Core-core repulsion = 26532.114650 eV Total energy + Delta-G solvation = -4165.865228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.23577 -41.00399 -39.72617 -39.05362 -36.52603 -35.60911 -34.31203 -33.71263 -32.19945 -32.13259 -30.13206 -29.50271 -27.57427 -26.20648 -24.89279 -24.42548 -23.56686 -22.74195 -22.11284 -21.64903 -20.64619 -19.02759 -18.43901 -18.29096 -17.82253 -17.02627 -16.91884 -16.78214 -16.59380 -16.15708 -16.06204 -15.84242 -15.73044 -15.48514 -15.07814 -14.95297 -14.37096 -14.20512 -14.03131 -13.88608 -13.65152 -13.59498 -13.14468 -13.06156 -12.97104 -12.88379 -12.86217 -12.82217 -12.54929 -12.44682 -12.40731 -12.14989 -12.11010 -11.90921 -11.82686 -11.76739 -11.69246 -10.77867 -10.65077 -10.45366 -10.19846 -9.91155 -9.09116 -8.19745 -6.38878 0.20671 1.14297 1.32004 1.33940 1.44734 1.99951 2.30279 2.33481 2.69735 3.05447 3.15237 3.31022 3.39911 3.55529 3.78911 3.94643 3.97822 4.07715 4.09456 4.27647 4.30776 4.34095 4.36811 4.47446 4.52968 4.55453 4.63198 4.65054 4.78227 4.82505 4.85661 4.97866 4.98786 5.01757 5.08164 5.12671 5.14274 5.22673 5.25065 5.27528 5.29554 5.37920 5.69812 5.84338 5.90025 5.97802 6.10730 6.23032 6.42559 6.58131 6.80388 6.81866 7.32611 8.82968 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002744 C = 0.002459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.765157 B =10202.526681 C =11381.703095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 H 0.074 0.926 4 C -0.161 4.161 5 C 0.111 3.889 6 H 0.111 0.889 7 N -0.678 5.678 8 C 0.519 3.481 9 O -0.516 6.516 10 C 0.503 3.497 11 O -0.546 6.546 12 N -0.575 5.575 13 C 0.121 3.879 14 C 0.055 3.945 15 N -0.538 5.538 16 C 0.200 3.800 17 C -0.557 4.557 18 H 0.049 0.951 19 C 0.015 3.985 20 N -0.922 5.922 21 Si 0.954 3.046 22 H -0.273 1.273 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.055 3.945 26 C 0.067 3.933 27 C 0.072 3.928 28 H 0.085 0.915 29 C -0.148 4.148 30 O -0.379 6.379 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.419 0.581 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.017 0.983 40 H 0.080 0.920 41 H 0.013 0.987 42 H 0.008 0.992 43 H 0.266 0.734 44 H 0.078 0.922 45 H 0.013 0.987 46 H 0.083 0.917 47 H 0.158 0.842 48 H 0.082 0.918 49 H 0.072 0.928 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.107 -4.969 25.599 26.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.012 3.988 3 H 0.092 0.908 4 C -0.199 4.199 5 C 0.007 3.993 6 H 0.129 0.871 7 N -0.331 5.331 8 C 0.301 3.699 9 O -0.394 6.394 10 C 0.286 3.714 11 O -0.425 6.425 12 N -0.307 5.307 13 C -0.001 4.001 14 C -0.074 4.074 15 N -0.262 5.262 16 C 0.074 3.926 17 C -0.596 4.596 18 H 0.067 0.933 19 C -0.185 4.185 20 N -0.562 5.562 21 Si 0.779 3.221 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.074 4.074 26 C -0.053 4.053 27 C 0.013 3.987 28 H 0.103 0.897 29 C -0.205 4.205 30 O -0.299 6.299 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.114 0.886 36 H 0.258 0.742 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.031 0.969 42 H 0.026 0.974 43 H 0.075 0.925 44 H 0.096 0.904 45 H 0.032 0.968 46 H 0.102 0.898 47 H 0.174 0.826 48 H 0.101 0.899 49 H 0.091 0.909 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.849 -5.383 25.542 26.750 hybrid contribution -1.140 1.471 -1.218 2.224 sum -6.989 -3.912 24.324 25.609 Atomic orbital electron populations 1.21778 0.91910 1.03320 1.03182 1.23249 0.96353 0.95177 0.84006 0.90843 1.23606 0.95623 1.01889 0.98805 1.22650 0.87200 0.94978 0.94467 0.87072 1.45828 1.39559 1.30777 1.16945 1.20026 0.82474 0.84816 0.82623 1.90353 1.62217 1.31332 1.55507 1.20153 0.82690 0.86516 0.82079 1.90721 1.65768 1.28407 1.57604 1.48182 1.41809 1.18979 1.21749 1.21926 0.93242 0.93266 0.91655 1.22220 0.99925 0.91747 0.93541 1.62479 1.45759 1.13161 1.04788 1.19440 0.94434 0.95102 0.83667 1.21953 1.07887 1.36884 0.92894 0.93266 1.25751 0.99998 0.96674 0.96042 1.70047 1.38818 1.47467 0.99859 0.85573 0.79776 0.78634 0.78084 1.19775 1.20126 1.20132 1.22228 0.92694 0.97507 0.94955 1.23380 1.06391 0.84152 0.91419 1.23014 0.85310 0.99047 0.91282 0.89707 1.21918 1.02724 0.93959 1.01927 1.88938 1.27780 1.73729 1.39429 0.91553 0.91447 0.90196 0.90636 0.88556 0.74227 0.88526 0.88793 0.96482 0.90137 0.96910 0.97368 0.92483 0.90400 0.96832 0.89842 0.82577 0.89946 0.90881 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.65 71.98 0.69 -1.09 16 2 C 0.07 1.02 3.98 31.28 0.12 1.14 16 3 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.16 -2.55 6.31 31.90 0.20 -2.35 16 5 C 0.11 1.71 2.97 45.98 0.14 1.85 16 6 H 0.11 1.79 7.23 -2.39 -0.02 1.77 16 7 N -0.68 -12.12 5.10 -439.16 -2.24 -14.36 16 8 C 0.52 12.68 7.78 87.27 0.68 13.36 16 9 O -0.52 -14.22 12.82 -3.25 -0.04 -14.26 16 10 C 0.50 14.43 7.75 87.27 0.68 15.10 16 11 O -0.55 -16.85 15.98 -3.25 -0.05 -16.90 16 12 N -0.58 -17.56 3.01 -819.53 -2.47 -20.03 16 13 C 0.12 3.72 6.58 86.35 0.57 4.28 16 14 C 0.05 2.11 5.13 86.38 0.44 2.56 16 15 N -0.54 -22.78 4.83 -899.83 -4.35 -27.12 16 16 C 0.20 10.41 5.12 85.56 0.44 10.85 16 17 C -0.56 -30.96 7.75 25.60 0.20 -30.76 16 18 H 0.05 2.76 5.88 -2.91 -0.02 2.74 16 19 C 0.02 0.86 5.46 84.66 0.46 1.32 16 20 N -0.92 -54.47 13.29 21.45 0.28 -54.18 16 21 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C 0.06 2.13 5.26 86.38 0.45 2.58 16 26 C 0.07 2.05 6.46 86.35 0.56 2.61 16 27 C 0.07 0.94 3.84 30.97 0.12 1.06 16 28 H 0.09 0.97 7.60 -2.39 -0.02 0.95 16 29 C -0.15 -1.55 9.36 71.98 0.67 -0.87 16 30 O -0.38 -6.26 10.89 -148.98 -1.62 -7.89 16 31 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.10 1.43 8.06 -2.39 -0.02 1.41 16 36 H 0.42 6.54 7.77 -92.71 -0.72 5.82 16 37 H 0.10 2.84 7.11 -2.38 -0.02 2.82 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.02 0.74 6.73 -2.39 -0.02 0.73 16 40 H 0.08 3.08 8.11 -2.39 -0.02 3.06 16 41 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.01 0.46 8.05 -2.39 -0.02 0.44 16 43 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 44 H 0.08 2.97 8.04 -2.38 -0.02 2.95 16 45 H 0.01 0.59 6.98 -2.39 -0.02 0.57 16 46 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.16 4.63 3.80 -76.82 -0.29 4.34 16 48 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -65.94 393.33 -2.08 -68.02 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.05 Total: 18.85 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.43 Total: 21.65 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -8.77 Total: -115.69 kcal Atomic # 8 Polarization: -37.33 SS G_CDS: -1.72 Total: -39.05 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -65.94 -2.08 -68.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192247.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.406 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds