Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.82279 * 2 1 4 4 C 1.54386 * 109.83111 * 239.11634 * 2 1 3 5 5 C 1.55311 * 102.25288 * 219.13175 * 4 2 1 6 6 H 1.08989 * 111.12338 * 152.08994 * 5 4 2 7 7 N 1.46502 * 111.12162 * 276.21556 * 5 4 2 8 8 C 1.34780 * 119.99458 * 273.54236 * 7 5 4 9 9 O 1.21352 * 120.00294 * 0.02562 * 8 7 5 10 10 C 1.49455 * 119.99637 * 180.02562 * 8 7 5 11 11 O 1.21350 * 120.00008 * 6.48169 * 10 8 7 12 12 N 1.34773 * 119.99795 * 186.48083 * 10 8 7 13 13 C 1.47081 * 120.88255 * 178.41915 * 12 10 8 14 14 C 1.53233 * 108.52457 * 231.20729 * 13 12 10 15 15 N 1.46905 * 109.33814 * 306.17131 * 14 13 12 16 16 C 1.46902 * 110.99457 * 187.25518 * 15 14 13 17 17 C 1.50705 * 109.46656 * 170.00086 * 16 15 14 18 18 H 1.07993 * 120.00321 * 359.71684 * 17 16 15 19 19 C 1.37883 * 119.99565 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99535 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00152 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47315 * 89.99987 * 21 19 17 23 23 H 1.48507 * 109.46664 * 209.99870 * 21 19 17 24 24 H 1.48494 * 109.46911 * 329.99428 * 21 19 17 25 25 C 1.46896 * 111.26912 * 63.10581 * 15 14 13 26 26 C 1.47079 * 120.88396 * 358.44303 * 12 10 8 27 27 C 1.54952 * 100.94022 * 34.13020 * 5 4 2 28 28 H 1.08994 * 110.30944 * 82.47356 * 27 5 4 29 29 C 1.52998 * 110.30583 * 204.64458 * 27 5 4 30 30 O 1.43234 * 109.83089 * 120.97940 * 2 1 3 31 31 H 1.08998 * 109.47134 * 180.88356 * 1 2 3 32 32 H 1.08997 * 109.46802 * 300.88599 * 1 2 3 33 33 H 1.09001 * 109.46726 * 60.88792 * 1 2 3 34 34 H 1.08999 * 110.84884 * 100.94045 * 4 2 1 35 35 H 1.09003 * 111.01945 * 337.39712 * 4 2 1 36 36 H 0.96997 * 120.00185 * 93.54596 * 7 5 4 37 37 H 1.09003 * 109.62745 * 111.49658 * 13 12 10 38 38 H 1.09004 * 109.62470 * 350.92110 * 13 12 10 39 39 H 1.08996 * 109.49261 * 186.21034 * 14 13 12 40 40 H 1.08997 * 109.49437 * 66.12873 * 14 13 12 41 41 H 1.08998 * 109.47585 * 50.00174 * 16 15 14 42 42 H 1.08997 * 109.47030 * 289.99350 * 16 15 14 43 43 H 0.97005 * 119.99934 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.49391 * 56.85362 * 25 15 14 45 45 H 1.09001 * 109.49065 * 176.93729 * 25 15 14 46 46 H 1.09005 * 109.63194 * 248.50397 * 26 12 10 47 47 H 1.09002 * 109.63065 * 8.89136 * 26 12 10 48 48 H 1.08997 * 109.47578 * 59.99716 * 29 27 5 49 49 H 1.08997 * 109.46998 * 180.02562 * 29 27 5 50 50 H 1.09002 * 109.46844 * 299.99642 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2464 5 6 3.2731 -1.5216 -0.6781 6 1 3.4576 -2.4334 -1.2459 7 7 4.4679 -0.6747 -0.6422 8 6 5.2590 -0.5792 -1.7292 9 8 4.9813 -1.1943 -2.7378 10 6 6.4783 0.2843 -1.6925 11 8 6.8214 0.8057 -0.6518 12 7 7.1966 0.4841 -2.8152 13 6 8.3799 1.3577 -2.8090 14 6 8.2452 2.3679 -3.9532 15 7 8.0109 1.6483 -5.2124 16 6 8.0472 2.5670 -6.3582 17 6 8.0500 1.7726 -7.6389 18 1 8.0316 0.6934 -7.6050 19 6 8.0812 2.4238 -8.8538 20 7 8.0841 1.7306 -9.9714 21 14 8.1209 4.2905 -8.9124 22 1 9.5310 4.7560 -8.9075 23 1 7.4485 4.7613 -10.1500 24 1 7.4147 4.8380 -7.7264 25 6 6.7446 0.9048 -5.1736 26 6 6.8179 -0.1654 -4.0793 27 6 2.7747 -1.8451 0.7530 28 1 2.1401 -2.7312 0.7414 29 6 3.9626 -2.0536 1.6945 30 8 2.0159 -0.6935 1.1552 31 1 -0.3633 -1.0275 0.0158 32 1 -0.3633 0.5275 0.8819 33 1 -0.3633 0.5000 -0.8979 34 1 2.3672 -0.0408 -2.0166 35 1 1.3028 -1.4334 -1.6348 36 1 4.6897 -0.1828 0.1638 37 1 9.2785 0.7580 -2.9539 38 1 8.4390 1.8872 -1.8580 39 1 9.1622 2.9515 -4.0330 40 1 7.4059 3.0340 -3.7534 41 1 8.9494 3.1765 -6.3068 42 1 7.1700 3.2134 -6.3335 43 1 8.1057 2.1887 -10.8263 44 1 5.9262 1.5914 -4.9568 45 1 6.5735 0.4274 -6.1384 46 1 7.5664 -0.9115 -4.3464 47 1 5.8458 -0.6457 -3.9674 48 1 4.5661 -1.1464 1.7244 49 1 3.5970 -2.2804 2.6959 50 1 4.5709 -2.8829 1.3336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333192252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -80.470331 kcal Electronic energy + Delta-G solvation = -30679.592169 eV Core-core repulsion = 26515.026023 eV Total energy + Delta-G solvation = -4164.566147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.29380 -40.20548 -38.62965 -37.72028 -35.37473 -34.30992 -33.12928 -32.39654 -31.36269 -30.88276 -29.14116 -28.84568 -26.41370 -24.89160 -24.09450 -23.36650 -21.94008 -21.31719 -20.98115 -20.69905 -19.53837 -17.77024 -17.67452 -16.92511 -16.67796 -16.22702 -16.15486 -15.53146 -15.30591 -14.89246 -14.71440 -14.58896 -14.41466 -14.23720 -13.99740 -13.85765 -13.52592 -13.39913 -13.05510 -12.89123 -12.63475 -12.48791 -12.43839 -12.32969 -12.22838 -11.69061 -11.63731 -11.57391 -11.39126 -11.30290 -11.20040 -10.88194 -10.77720 -10.57898 -10.38034 -10.01613 -9.93124 -9.60246 -9.36381 -9.09374 -8.67282 -8.60581 -7.47606 -6.09189 -4.07065 1.27788 2.13330 3.06279 3.23652 3.25396 3.32989 3.34645 3.36120 3.98970 4.11777 4.17798 4.38121 4.38244 4.64558 4.65218 4.70341 4.84217 4.92325 5.08790 5.13651 5.19841 5.22436 5.26950 5.32887 5.34291 5.45984 5.49846 5.52092 5.56810 5.64324 5.73800 5.74090 5.76192 5.82223 5.88515 6.08523 6.20178 6.38107 6.45913 6.55463 6.60879 6.78814 6.81548 6.91844 7.27189 7.51643 7.60346 7.79983 7.88024 7.94858 8.59674 8.98702 9.52178 11.03686 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.002475 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.845365 B =11312.600886 C =11999.530265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.075 3.925 3 H 0.081 0.919 4 C -0.162 4.162 5 C 0.111 3.889 6 H 0.114 0.886 7 N -0.690 5.690 8 C 0.514 3.486 9 O -0.501 6.501 10 C 0.503 3.497 11 O -0.536 6.536 12 N -0.569 5.569 13 C 0.114 3.886 14 C 0.039 3.961 15 N -0.528 5.528 16 C 0.162 3.838 17 C -0.511 4.511 18 H 0.082 0.918 19 C 0.069 3.931 20 N -0.898 5.898 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.052 3.948 26 C 0.056 3.944 27 C 0.073 3.927 28 H 0.088 0.912 29 C -0.154 4.154 30 O -0.373 6.373 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.027 0.973 41 H 0.025 0.975 42 H -0.011 1.011 43 H 0.264 0.736 44 H 0.022 0.978 45 H 0.104 0.896 46 H 0.076 0.924 47 H 0.150 0.850 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.119 -6.492 22.879 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.099 0.901 4 C -0.201 4.201 5 C 0.006 3.994 6 H 0.132 0.868 7 N -0.345 5.345 8 C 0.296 3.704 9 O -0.378 6.378 10 C 0.285 3.715 11 O -0.414 6.414 12 N -0.301 5.301 13 C -0.008 4.008 14 C -0.091 4.091 15 N -0.253 5.253 16 C 0.036 3.964 17 C -0.549 4.549 18 H 0.100 0.900 19 C -0.133 4.133 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.077 4.077 26 C -0.065 4.065 27 C 0.015 3.985 28 H 0.106 0.894 29 C -0.212 4.212 30 O -0.293 6.293 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.254 0.746 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.045 0.955 41 H 0.043 0.957 42 H 0.006 0.994 43 H 0.074 0.926 44 H 0.041 0.959 45 H 0.122 0.878 46 H 0.094 0.906 47 H 0.166 0.834 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.778 -6.905 22.637 26.436 hybrid contribution -0.370 1.912 -0.153 1.953 sum -12.149 -4.993 22.484 26.040 Atomic orbital electron populations 1.22136 0.94578 1.02663 1.02524 1.22757 0.94566 0.96440 0.84487 0.90104 1.23644 0.97375 1.00648 0.98440 1.22699 0.84488 0.94866 0.97391 0.86778 1.45746 1.24744 1.47930 1.16044 1.20368 0.84160 0.82359 0.83514 1.90403 1.72621 1.45091 1.29639 1.19849 0.84463 0.82736 0.84479 1.90733 1.70292 1.50274 1.30113 1.48193 1.27052 1.45219 1.09600 1.21932 0.86960 0.92464 0.99489 1.22442 1.01113 0.94796 0.90703 1.61950 1.33217 1.28405 1.01722 1.20180 0.95194 0.91642 0.89355 1.21012 1.50564 0.95510 0.87860 0.90004 1.24896 0.94788 0.97975 0.95598 1.69891 1.50826 1.35526 0.97485 0.86871 0.78631 0.86603 0.77689 1.20112 1.21177 1.19362 1.22385 0.90115 0.95485 0.99684 1.23489 1.06223 0.95884 0.80881 1.23251 0.93085 0.90139 0.92009 0.89418 1.21888 0.96675 1.02776 0.99829 1.88486 1.70503 1.40060 1.30215 0.92083 0.91867 0.91334 0.89239 0.88902 0.74638 0.90057 0.89079 0.89775 0.95457 0.95664 0.99377 0.92610 0.95938 0.87795 0.90581 0.83384 0.91628 0.91232 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.44 37.16 0.35 -0.68 16 2 C 0.07 0.57 4.15 -26.00 -0.11 0.47 16 3 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 4 C -0.16 -1.22 6.24 -24.78 -0.15 -1.37 16 5 C 0.11 0.86 3.09 -65.67 -0.20 0.66 16 6 H 0.11 0.89 7.74 -51.94 -0.40 0.49 16 7 N -0.69 -6.59 4.70 -52.06 -0.24 -6.84 16 8 C 0.51 6.37 7.81 -11.58 -0.09 6.28 16 9 O -0.50 -6.92 12.79 5.49 0.07 -6.85 16 10 C 0.50 7.21 7.77 -11.58 -0.09 7.12 16 11 O -0.54 -8.29 15.95 5.50 0.09 -8.20 16 12 N -0.57 -8.61 3.01 -172.97 -0.52 -9.13 16 13 C 0.11 1.67 6.59 -3.60 -0.02 1.65 16 14 C 0.04 0.65 5.62 -3.70 -0.02 0.63 16 15 N -0.53 -10.76 4.62 -235.76 -1.09 -11.85 16 16 C 0.16 3.86 3.79 -4.97 -0.02 3.84 16 17 C -0.51 -14.20 8.96 -34.44 -0.31 -14.51 16 18 H 0.08 2.46 7.38 -52.49 -0.39 2.07 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 21 Si 0.87 21.23 27.47 -169.99 -4.67 16.56 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 25 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 26 C 0.06 0.89 6.36 -3.60 -0.02 0.87 16 27 C 0.07 0.50 3.94 -25.70 -0.10 0.40 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 C -0.15 -0.97 9.20 37.16 0.34 -0.63 16 30 O -0.37 -3.24 10.70 -35.23 -0.38 -3.61 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.57 7.86 -51.93 -0.41 0.17 16 36 H 0.42 3.85 6.41 -40.82 -0.26 3.59 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.09 1.25 7.07 -51.93 -0.37 0.89 16 39 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.03 0.60 7.40 -51.93 -0.38 0.21 16 42 H -0.01 -0.28 7.18 -51.93 -0.37 -0.65 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.10 2.17 6.67 -51.93 -0.35 1.82 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.15 2.29 3.91 -56.56 -0.22 2.07 16 48 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 389.90 15.07 5.88 5.88 Total: -1.00 -31.75 389.90 -8.80 -40.55 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -8.14 Total: 2.31 kcal Atomic # 6 Polarization: 8.12 SS G_CDS: -0.57 Total: 7.55 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: -1.08 Total: -54.18 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.22 Total: -18.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.75 -8.80 -40.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.915 kcal (2) G-P(sol) polarization free energy of solvation -31.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds