Wall clock time and date at job start Sat Apr 11 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.82279 * 2 1 4 4 C 1.54386 * 109.83111 * 239.11634 * 2 1 3 5 5 C 1.55311 * 102.25288 * 219.13175 * 4 2 1 6 6 H 1.08989 * 111.12338 * 152.08994 * 5 4 2 7 7 N 1.46502 * 111.12162 * 276.21556 * 5 4 2 8 8 C 1.34780 * 119.99458 * 273.54236 * 7 5 4 9 9 O 1.21352 * 120.00294 * 0.02562 * 8 7 5 10 10 C 1.49455 * 119.99637 * 180.02562 * 8 7 5 11 11 O 1.21350 * 120.00008 * 6.48169 * 10 8 7 12 12 N 1.34773 * 119.99795 * 186.48083 * 10 8 7 13 13 C 1.47081 * 120.88255 * 178.41915 * 12 10 8 14 14 C 1.53233 * 108.52457 * 231.20729 * 13 12 10 15 15 N 1.46905 * 109.33814 * 306.17131 * 14 13 12 16 16 C 1.46902 * 110.99457 * 187.25518 * 15 14 13 17 17 C 1.50705 * 109.46656 * 170.00086 * 16 15 14 18 18 H 1.07993 * 120.00321 * 359.71684 * 17 16 15 19 19 C 1.37883 * 119.99565 * 179.97438 * 17 16 15 20 20 N 1.31514 * 119.99535 * 179.97438 * 19 17 16 21 21 Si 1.86801 * 120.00152 * 0.02562 * 19 17 16 22 22 H 1.48494 * 109.47315 * 89.99987 * 21 19 17 23 23 H 1.48507 * 109.46664 * 209.99870 * 21 19 17 24 24 H 1.48494 * 109.46911 * 329.99428 * 21 19 17 25 25 C 1.46896 * 111.26912 * 63.10581 * 15 14 13 26 26 C 1.47079 * 120.88396 * 358.44303 * 12 10 8 27 27 C 1.54952 * 100.94022 * 34.13020 * 5 4 2 28 28 H 1.08994 * 110.30944 * 82.47356 * 27 5 4 29 29 C 1.52998 * 110.30583 * 204.64458 * 27 5 4 30 30 O 1.43234 * 109.83089 * 120.97940 * 2 1 3 31 31 H 1.08998 * 109.47134 * 180.88356 * 1 2 3 32 32 H 1.08997 * 109.46802 * 300.88599 * 1 2 3 33 33 H 1.09001 * 109.46726 * 60.88792 * 1 2 3 34 34 H 1.08999 * 110.84884 * 100.94045 * 4 2 1 35 35 H 1.09003 * 111.01945 * 337.39712 * 4 2 1 36 36 H 0.96997 * 120.00185 * 93.54596 * 7 5 4 37 37 H 1.09003 * 109.62745 * 111.49658 * 13 12 10 38 38 H 1.09004 * 109.62470 * 350.92110 * 13 12 10 39 39 H 1.08996 * 109.49261 * 186.21034 * 14 13 12 40 40 H 1.08997 * 109.49437 * 66.12873 * 14 13 12 41 41 H 1.08998 * 109.47585 * 50.00174 * 16 15 14 42 42 H 1.08997 * 109.47030 * 289.99350 * 16 15 14 43 43 H 0.97005 * 119.99934 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.49391 * 56.85362 * 25 15 14 45 45 H 1.09001 * 109.49065 * 176.93729 * 25 15 14 46 46 H 1.09005 * 109.63194 * 248.50397 * 26 12 10 47 47 H 1.09002 * 109.63065 * 8.89136 * 26 12 10 48 48 H 1.08997 * 109.47578 * 59.99716 * 29 27 5 49 49 H 1.08997 * 109.46998 * 180.02562 * 29 27 5 50 50 H 1.09002 * 109.46844 * 299.99642 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0538 -0.7455 -1.2464 5 6 3.2731 -1.5216 -0.6781 6 1 3.4576 -2.4334 -1.2459 7 7 4.4679 -0.6747 -0.6422 8 6 5.2590 -0.5792 -1.7292 9 8 4.9813 -1.1943 -2.7378 10 6 6.4783 0.2843 -1.6925 11 8 6.8214 0.8057 -0.6518 12 7 7.1966 0.4841 -2.8152 13 6 8.3799 1.3577 -2.8090 14 6 8.2452 2.3679 -3.9532 15 7 8.0109 1.6483 -5.2124 16 6 8.0472 2.5670 -6.3582 17 6 8.0500 1.7726 -7.6389 18 1 8.0316 0.6934 -7.6050 19 6 8.0812 2.4238 -8.8538 20 7 8.0841 1.7306 -9.9714 21 14 8.1209 4.2905 -8.9124 22 1 9.5310 4.7560 -8.9075 23 1 7.4485 4.7613 -10.1500 24 1 7.4147 4.8380 -7.7264 25 6 6.7446 0.9048 -5.1736 26 6 6.8179 -0.1654 -4.0793 27 6 2.7747 -1.8451 0.7530 28 1 2.1401 -2.7312 0.7414 29 6 3.9626 -2.0536 1.6945 30 8 2.0159 -0.6935 1.1552 31 1 -0.3633 -1.0275 0.0158 32 1 -0.3633 0.5275 0.8819 33 1 -0.3633 0.5000 -0.8979 34 1 2.3672 -0.0408 -2.0166 35 1 1.3028 -1.4334 -1.6348 36 1 4.6897 -0.1828 0.1638 37 1 9.2785 0.7580 -2.9539 38 1 8.4390 1.8872 -1.8580 39 1 9.1622 2.9515 -4.0330 40 1 7.4059 3.0340 -3.7534 41 1 8.9494 3.1765 -6.3068 42 1 7.1700 3.2134 -6.3335 43 1 8.1057 2.1887 -10.8263 44 1 5.9262 1.5914 -4.9568 45 1 6.5735 0.4274 -6.1384 46 1 7.5664 -0.9115 -4.3464 47 1 5.8458 -0.6457 -3.9674 48 1 4.5661 -1.1464 1.7244 49 1 3.5970 -2.2804 2.6959 50 1 4.5709 -2.8829 1.3336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333192252.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:51 Heat of formation + Delta-G solvation = -104.256804 kcal Electronic energy + Delta-G solvation = -30680.623628 eV Core-core repulsion = 26515.026023 eV Total energy + Delta-G solvation = -4165.597605 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.26774 -41.05235 -39.70998 -39.05913 -36.46973 -35.56336 -34.41177 -33.68522 -32.23941 -32.06403 -30.61973 -29.65838 -27.91297 -25.92930 -24.96706 -24.68021 -23.32695 -22.46314 -21.76407 -21.66488 -20.74246 -18.97883 -18.87224 -18.46928 -17.80280 -17.22018 -16.96242 -16.62035 -16.37107 -16.13158 -16.06492 -15.81509 -15.62762 -15.52617 -15.14121 -14.94550 -14.74696 -14.47955 -14.20240 -13.89294 -13.78902 -13.57764 -13.27857 -13.15378 -13.09088 -12.99982 -12.81630 -12.74752 -12.48882 -12.28339 -12.23039 -12.12763 -11.98273 -11.94951 -11.86618 -11.83369 -11.43848 -10.78297 -10.63829 -10.38706 -10.25569 -9.95565 -9.10468 -8.28294 -6.31764 0.21006 1.13493 1.34911 1.35905 1.46112 1.99028 2.28431 2.33952 2.68002 3.03954 3.12105 3.15213 3.38999 3.55242 3.80246 3.90157 3.99501 4.06451 4.14081 4.17094 4.27003 4.31361 4.36033 4.36564 4.45688 4.56459 4.64080 4.68343 4.74587 4.78710 4.79437 4.83500 4.90544 4.91448 4.98078 4.99679 5.06071 5.14525 5.22636 5.25323 5.28695 5.37252 5.51610 5.82889 5.93905 6.04186 6.12775 6.26987 6.56404 6.58983 6.74535 6.80977 7.31702 8.87976 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017367 B = 0.002475 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.845365 B =11312.600886 C =11999.530265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.073 3.927 3 H 0.072 0.928 4 C -0.159 4.159 5 C 0.106 3.894 6 H 0.119 0.881 7 N -0.674 5.674 8 C 0.517 3.483 9 O -0.518 6.518 10 C 0.504 3.496 11 O -0.545 6.545 12 N -0.575 5.575 13 C 0.118 3.882 14 C 0.040 3.960 15 N -0.541 5.541 16 C 0.172 3.828 17 C -0.516 4.516 18 H 0.042 0.958 19 C 0.010 3.990 20 N -0.946 5.946 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.283 1.283 24 H -0.254 1.254 25 C 0.057 3.943 26 C 0.072 3.928 27 C 0.076 3.924 28 H 0.108 0.892 29 C -0.154 4.154 30 O -0.388 6.388 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.109 0.891 36 H 0.418 0.582 37 H 0.088 0.912 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.027 0.973 41 H 0.034 0.966 42 H -0.015 1.015 43 H 0.267 0.733 44 H 0.020 0.980 45 H 0.074 0.926 46 H 0.073 0.927 47 H 0.158 0.842 48 H 0.055 0.945 49 H 0.075 0.925 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 -5.788 24.925 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.016 3.984 3 H 0.090 0.910 4 C -0.197 4.197 5 C 0.002 3.998 6 H 0.137 0.863 7 N -0.328 5.328 8 C 0.299 3.701 9 O -0.396 6.396 10 C 0.287 3.713 11 O -0.424 6.424 12 N -0.307 5.307 13 C -0.004 4.004 14 C -0.089 4.089 15 N -0.266 5.266 16 C 0.045 3.955 17 C -0.554 4.554 18 H 0.060 0.940 19 C -0.188 4.188 20 N -0.587 5.587 21 Si 0.770 3.230 22 H -0.189 1.189 23 H -0.209 1.209 24 H -0.178 1.178 25 C -0.072 4.072 26 C -0.049 4.049 27 C 0.019 3.981 28 H 0.125 0.875 29 C -0.212 4.212 30 O -0.308 6.308 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.257 0.743 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.117 0.883 40 H 0.045 0.955 41 H 0.052 0.948 42 H 0.003 0.997 43 H 0.076 0.924 44 H 0.038 0.962 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.174 0.826 48 H 0.074 0.926 49 H 0.094 0.906 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.365 -6.206 24.745 28.350 hybrid contribution -0.221 1.600 -0.707 1.763 sum -12.587 -4.606 24.037 27.521 Atomic orbital electron populations 1.22110 0.93546 1.03147 1.02764 1.22778 0.95391 0.95943 0.84274 0.91015 1.23624 0.97522 1.00579 0.97982 1.22902 0.83724 0.94684 0.98497 0.86310 1.45728 1.24587 1.47332 1.15141 1.20029 0.83954 0.82148 0.84017 1.90377 1.72908 1.45926 1.30354 1.20143 0.84693 0.82538 0.83925 1.90727 1.70635 1.50700 1.30305 1.48209 1.27483 1.45527 1.09503 1.21923 0.87121 0.92168 0.99140 1.22537 1.01731 0.95265 0.89365 1.61863 1.33957 1.28354 1.02442 1.19946 0.95157 0.91483 0.88929 1.21233 1.49915 0.94184 0.90086 0.93982 1.25814 0.94408 1.03536 0.95045 1.70044 1.52449 1.37886 0.98281 0.85737 0.79304 0.79841 0.78163 1.18863 1.20873 1.17806 1.22291 0.89590 0.95916 0.99427 1.23298 1.06744 0.94532 0.80327 1.23372 0.93377 0.90260 0.91125 0.87457 1.21903 0.96467 1.02624 1.00156 1.88474 1.70804 1.40760 1.30802 0.91440 0.92142 0.90623 0.90654 0.87275 0.74299 0.89385 0.87621 0.88307 0.95501 0.94846 0.99748 0.92421 0.96164 0.90787 0.90904 0.82568 0.92564 0.90647 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.77 9.44 71.98 0.68 -1.09 16 2 C 0.07 1.03 4.15 31.07 0.13 1.15 16 3 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.16 -2.14 6.24 31.86 0.20 -1.94 16 5 C 0.11 1.48 3.09 46.45 0.14 1.62 16 6 H 0.12 1.61 7.74 -2.39 -0.02 1.60 16 7 N -0.67 -11.95 4.70 -436.96 -2.05 -14.00 16 8 C 0.52 12.19 7.81 87.27 0.68 12.88 16 9 O -0.52 -13.80 12.79 -3.25 -0.04 -13.84 16 10 C 0.50 13.74 7.77 87.27 0.68 14.42 16 11 O -0.54 -15.91 15.95 -3.25 -0.05 -15.96 16 12 N -0.58 -16.72 3.01 -819.50 -2.47 -19.19 16 13 C 0.12 3.26 6.59 86.35 0.57 3.83 16 14 C 0.04 1.26 5.62 86.38 0.49 1.75 16 15 N -0.54 -21.94 4.62 -899.82 -4.16 -26.09 16 16 C 0.17 8.11 3.79 85.56 0.32 8.43 16 17 C -0.52 -29.39 8.96 25.60 0.23 -29.16 16 18 H 0.04 2.66 7.38 -2.91 -0.02 2.64 16 19 C 0.01 0.55 5.47 84.66 0.46 1.01 16 20 N -0.95 -58.62 13.96 21.45 0.30 -58.32 16 21 Si 0.95 43.61 27.47 68.60 1.88 45.49 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 23 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 24 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 25 C 0.06 2.17 5.46 86.38 0.47 2.64 16 26 C 0.07 2.28 6.36 86.35 0.55 2.83 16 27 C 0.08 0.88 3.94 31.26 0.12 1.01 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 C -0.15 -1.65 9.20 71.98 0.66 -0.99 16 30 O -0.39 -6.09 10.70 -148.98 -1.59 -7.69 16 31 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 1.12 7.86 -2.39 -0.02 1.10 16 36 H 0.42 7.17 6.41 -92.71 -0.59 6.57 16 37 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.11 2.65 7.07 -2.38 -0.02 2.63 16 39 H 0.10 2.85 7.99 -2.39 -0.02 2.83 16 40 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.03 1.53 7.40 -2.39 -0.02 1.51 16 42 H -0.02 -0.72 7.18 -2.39 -0.02 -0.74 16 43 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.07 3.26 6.67 -2.39 -0.02 3.25 16 46 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 47 H 0.16 4.80 3.91 -75.77 -0.30 4.50 16 48 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 49 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -68.69 389.90 -1.78 -70.48 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.01 Total: 20.73 kcal Atomic # 6 Polarization: 12.01 SS G_CDS: 6.39 Total: 18.39 kcal Atomic # 7 Polarization: -109.23 SS G_CDS: -8.38 Total: -117.61 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -1.69 Total: -37.49 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.88 Total: 45.49 kcal Total: -68.69 -1.78 -70.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192252.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.779 kcal (2) G-P(sol) polarization free energy of solvation -68.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds