Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 110.35032 * 2 1 4 4 C 1.54953 * 110.31083 * 237.86172 * 2 1 3 5 5 C 1.55302 * 100.97917 * 204.61436 * 4 2 1 6 6 H 1.09001 * 110.84778 * 275.96035 * 5 4 2 7 7 N 1.46500 * 110.84273 * 152.34396 * 5 4 2 8 8 C 1.34779 * 120.00240 * 86.45662 * 7 5 4 9 9 O 1.21347 * 119.99709 * 359.97438 * 8 7 5 10 10 C 1.49452 * 120.00218 * 179.97438 * 8 7 5 11 11 O 1.21349 * 119.99741 * 353.35696 * 10 8 7 12 12 N 1.34769 * 119.99902 * 173.35860 * 10 8 7 13 13 C 1.47085 * 120.88053 * 181.21907 * 12 10 8 14 14 C 1.53702 * 108.27546 * 128.74973 * 13 12 10 15 15 N 1.46901 * 109.25130 * 54.08582 * 14 13 12 16 16 C 1.46901 * 110.99659 * 172.60181 * 15 14 13 17 17 C 1.50704 * 109.46893 * 59.86849 * 16 15 14 18 18 H 1.08005 * 119.99975 * 355.55767 * 17 16 15 19 19 C 1.37880 * 119.99936 * 175.56801 * 17 16 15 20 20 N 1.31515 * 119.99690 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00064 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47202 * 90.00543 * 21 19 17 23 23 H 1.48503 * 109.47123 * 210.00389 * 21 19 17 24 24 H 1.48504 * 109.47414 * 330.00230 * 21 19 17 25 25 C 1.46895 * 111.27209 * 296.75185 * 15 14 13 26 26 C 1.47078 * 120.88444 * 1.49581 * 12 10 8 27 27 C 1.54499 * 102.20057 * 34.13242 * 5 4 2 28 28 H 1.09000 * 109.82634 * 98.16493 * 27 5 4 29 29 C 1.52999 * 109.89651 * 219.08691 * 27 5 4 30 30 O 1.43237 * 107.59987 * 338.64271 * 27 5 4 31 31 H 1.09002 * 109.46918 * 182.14384 * 1 2 3 32 32 H 1.08999 * 109.47465 * 302.13937 * 1 2 3 33 33 H 1.08999 * 109.47829 * 62.13888 * 1 2 3 34 34 H 1.08995 * 111.11997 * 322.55730 * 4 2 1 35 35 H 1.09005 * 111.12085 * 86.67166 * 4 2 1 36 36 H 0.97002 * 119.99969 * 266.45119 * 7 5 4 37 37 H 1.08993 * 109.63210 * 248.52210 * 13 12 10 38 38 H 1.08999 * 109.62679 * 9.10719 * 13 12 10 39 39 H 1.08994 * 109.65231 * 294.08614 * 14 13 12 40 40 H 1.09000 * 109.44067 * 173.95964 * 14 13 12 41 41 H 1.09003 * 109.47656 * 179.86297 * 16 15 14 42 42 H 1.08994 * 109.47866 * 299.86558 * 16 15 14 43 43 H 0.96997 * 119.99835 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.49461 * 303.14804 * 25 15 14 45 45 H 1.09004 * 109.51698 * 183.07984 * 25 15 14 46 46 H 1.08998 * 109.62921 * 350.89799 * 26 12 10 47 47 H 1.09003 * 109.62691 * 111.48106 * 26 12 10 48 48 H 1.09007 * 109.46863 * 179.64242 * 29 27 5 49 49 H 1.08998 * 109.47765 * 299.63956 * 29 27 5 50 50 H 1.08999 * 109.47378 * 59.64381 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0678 -0.7730 -1.2305 5 6 3.4703 -1.2024 -0.7202 6 1 4.1975 -0.4037 -0.8664 7 7 3.9091 -2.4358 -1.3777 8 6 4.5491 -2.3771 -2.5624 9 8 4.7613 -1.3025 -3.0847 10 6 4.9972 -3.6354 -3.2328 11 8 4.8943 -4.6990 -2.6579 12 7 5.5158 -3.5887 -4.4759 13 6 5.9383 -4.8179 -5.1643 14 6 5.2855 -4.8399 -6.5556 15 7 5.6065 -3.5920 -7.2610 16 6 5.1510 -3.6441 -8.6567 17 6 3.6587 -3.8514 -8.6906 18 1 3.1142 -4.0077 -7.7710 19 6 2.9885 -3.8418 -9.8955 20 7 1.6863 -4.0232 -9.9251 21 14 3.9302 -3.5711 -11.4858 22 1 4.3748 -4.8805 -12.0269 23 1 3.0488 -2.9003 -12.4750 24 1 5.1157 -2.7170 -11.2200 25 6 5.0426 -2.4269 -6.5664 26 6 5.6797 -2.3067 -5.1779 27 6 3.2112 -1.4419 0.7840 28 1 3.0625 -2.5058 0.9687 29 6 4.3987 -0.9339 1.6042 30 8 2.0286 -0.7167 1.1406 31 1 -0.3633 -1.0270 0.0384 32 1 -0.3634 0.5467 0.8702 33 1 -0.3635 0.4802 -0.9085 34 1 1.4470 -1.6415 -1.4508 35 1 2.1487 -0.1203 -2.0998 36 1 3.7392 -3.2948 -0.9603 37 1 7.0235 -4.8264 -5.2654 38 1 5.6142 -5.6875 -4.5926 39 1 4.2044 -4.9313 -6.4518 40 1 5.6695 -5.6876 -7.1231 41 1 5.3990 -2.7070 -9.1551 42 1 5.6443 -4.4698 -9.1693 43 1 1.2148 -4.0161 -10.7727 44 1 3.9649 -2.5519 -6.4624 45 1 5.2504 -1.5244 -7.1413 46 1 5.1846 -1.5152 -4.6152 47 1 6.7406 -2.0784 -5.2803 48 1 4.2059 -1.1005 2.6641 49 1 5.3001 -1.4715 1.3101 50 1 4.5360 0.1321 1.4230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333192258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -84.986314 kcal Electronic energy + Delta-G solvation = -30650.649495 eV Core-core repulsion = 26485.887521 eV Total energy + Delta-G solvation = -4164.761974 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15340 -40.11821 -38.62175 -37.66827 -35.45526 -34.31688 -33.09257 -32.31268 -31.36802 -30.73558 -29.01021 -28.72579 -26.21727 -24.95811 -23.83718 -23.04552 -22.05878 -21.55076 -21.23629 -20.59182 -19.30197 -17.78876 -17.39338 -16.83779 -16.78062 -16.35921 -16.01567 -15.55167 -15.12137 -14.73968 -14.62493 -14.50215 -14.33588 -14.29154 -13.96514 -13.79145 -13.34136 -13.30140 -13.16790 -12.79712 -12.50602 -12.47559 -12.36352 -12.24449 -12.14381 -11.68618 -11.54330 -11.38639 -11.37705 -11.26695 -11.19884 -10.85092 -10.64679 -10.52177 -10.35104 -9.98670 -9.96677 -9.59476 -9.53014 -9.05020 -8.65395 -8.60234 -7.32060 -6.16042 -4.16921 1.34127 2.17147 3.13912 3.22569 3.23782 3.31660 3.34447 3.47161 4.04450 4.20208 4.23461 4.34320 4.49872 4.57817 4.74004 4.84291 4.88553 4.99459 5.12150 5.16676 5.21256 5.32522 5.38212 5.40895 5.46536 5.47718 5.59963 5.62382 5.68207 5.75614 5.76235 5.84515 5.86866 5.88825 5.96470 6.27884 6.42439 6.50374 6.59569 6.63593 6.69696 6.83043 6.87972 6.99244 7.33115 7.48396 7.64406 7.92041 7.95085 7.97355 8.37666 8.85324 9.46136 10.96825 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.002626 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.908754 B =10659.821113 C =11773.383627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 H 0.075 0.925 4 C -0.167 4.167 5 C 0.115 3.885 6 H 0.111 0.889 7 N -0.692 5.692 8 C 0.517 3.483 9 O -0.503 6.503 10 C 0.504 3.496 11 O -0.535 6.535 12 N -0.566 5.566 13 C 0.111 3.889 14 C 0.049 3.951 15 N -0.536 5.536 16 C 0.153 3.847 17 C -0.554 4.554 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.898 5.898 21 Si 0.880 3.120 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.263 1.263 25 C 0.050 3.950 26 C 0.057 3.943 27 C 0.074 3.926 28 H 0.086 0.914 29 C -0.162 4.162 30 O -0.369 6.369 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.414 0.586 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.032 0.968 42 H 0.026 0.974 43 H 0.264 0.736 44 H 0.046 0.954 45 H 0.079 0.921 46 H 0.148 0.852 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.069 0.931 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 6.874 21.167 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.020 3.980 3 H 0.093 0.907 4 C -0.205 4.205 5 C 0.009 3.991 6 H 0.129 0.871 7 N -0.346 5.346 8 C 0.299 3.701 9 O -0.379 6.379 10 C 0.285 3.715 11 O -0.413 6.413 12 N -0.298 5.298 13 C -0.011 4.011 14 C -0.080 4.080 15 N -0.259 5.259 16 C 0.026 3.974 17 C -0.592 4.592 18 H 0.091 0.909 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.187 1.187 25 C -0.080 4.080 26 C -0.064 4.064 27 C 0.016 3.984 28 H 0.104 0.896 29 C -0.220 4.220 30 O -0.289 6.289 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.252 0.748 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.164 0.836 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.676 7.128 21.157 22.810 hybrid contribution -0.577 -0.459 -1.207 1.414 sum 4.099 6.668 19.950 21.431 Atomic orbital electron populations 1.21886 0.93223 1.03118 1.02627 1.22935 0.95310 0.95541 0.84205 0.90695 1.23786 0.95561 1.01966 0.99234 1.22703 0.97075 0.87727 0.91560 0.87149 1.45659 1.57560 1.10292 1.21066 1.20372 0.78103 0.89971 0.81622 1.90382 1.55296 1.30918 1.61330 1.19794 0.79981 0.88755 0.82926 1.90734 1.55870 1.30481 1.64202 1.48116 1.57810 1.10373 1.13533 1.22127 0.99610 0.86238 0.93134 1.22356 0.99465 0.94081 0.92137 1.62448 1.58051 1.01485 1.03948 1.20222 0.94873 0.97177 0.85106 1.21679 0.91882 1.50679 0.94998 0.90879 1.24981 0.94701 0.94137 0.99218 1.69928 1.07594 1.49563 1.26508 0.86784 0.80248 0.78955 0.83335 1.20162 1.21289 1.18745 1.22275 0.97953 0.94954 0.92777 1.23437 1.02725 0.85859 0.94361 1.22867 0.86443 0.97070 0.92027 0.89598 1.22145 0.96815 1.02120 1.00884 1.88496 1.41503 1.64792 1.34086 0.91742 0.91771 0.90888 0.89479 0.88757 0.74833 0.90627 0.89114 0.93184 0.90088 0.94985 0.95596 0.92623 0.93542 0.90288 0.83554 0.91217 0.91377 0.91165 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.62 37.15 0.36 -0.73 16 2 C 0.08 0.63 4.07 -25.70 -0.10 0.52 16 3 H 0.08 0.55 8.14 -51.92 -0.42 0.12 16 4 C -0.17 -1.47 6.26 -24.48 -0.15 -1.62 16 5 C 0.11 1.01 2.81 -65.92 -0.18 0.82 16 6 H 0.11 1.01 7.43 -51.93 -0.39 0.62 16 7 N -0.69 -7.00 5.21 -52.29 -0.27 -7.27 16 8 C 0.52 6.78 7.80 -11.58 -0.09 6.69 16 9 O -0.50 -7.20 12.78 5.50 0.07 -7.13 16 10 C 0.50 7.67 7.77 -11.59 -0.09 7.58 16 11 O -0.53 -8.80 15.95 5.50 0.09 -8.71 16 12 N -0.57 -8.98 3.00 -172.69 -0.52 -9.49 16 13 C 0.11 1.74 6.62 -3.36 -0.02 1.71 16 14 C 0.05 0.91 5.18 -3.46 -0.02 0.89 16 15 N -0.54 -10.75 4.83 -235.47 -1.14 -11.88 16 16 C 0.15 3.56 4.20 -4.97 -0.02 3.54 16 17 C -0.55 -15.10 8.32 -34.44 -0.29 -15.39 16 18 H 0.07 2.19 6.12 -52.48 -0.32 1.87 16 19 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 20 N -0.90 -27.06 13.96 55.43 0.77 -26.28 16 21 Si 0.88 21.02 27.56 -169.99 -4.68 16.34 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.02 6.42 56.52 0.36 -5.65 16 25 C 0.05 0.93 5.24 -3.70 -0.02 0.91 16 26 C 0.06 0.90 6.35 -3.60 -0.02 0.87 16 27 C 0.07 0.59 3.91 -25.95 -0.10 0.48 16 28 H 0.09 0.62 7.68 -51.93 -0.40 0.23 16 29 C -0.16 -1.09 9.45 37.16 0.35 -0.74 16 30 O -0.37 -3.46 10.70 -35.23 -0.38 -3.84 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.81 8.06 -51.93 -0.42 0.39 16 35 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.41 3.77 7.80 -40.82 -0.32 3.45 16 37 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.09 1.39 7.07 -51.93 -0.37 1.02 16 39 H 0.05 1.09 6.64 -51.93 -0.35 0.74 16 40 H 0.08 1.45 8.11 -51.93 -0.42 1.03 16 41 H 0.03 0.76 6.82 -51.93 -0.35 0.40 16 42 H 0.03 0.60 7.79 -51.93 -0.40 0.20 16 43 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.05 1.01 7.07 -51.93 -0.37 0.64 16 45 H 0.08 1.44 8.06 -51.93 -0.42 1.02 16 46 H 0.15 2.27 3.92 -56.52 -0.22 2.05 16 47 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 48 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 389.99 15.07 5.88 5.88 Total: -1.00 -31.52 389.99 -8.83 -40.35 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -8.14 Total: 4.56 kcal Atomic # 6 Polarization: 7.99 SS G_CDS: -0.50 Total: 7.49 kcal Atomic # 7 Polarization: -53.78 SS G_CDS: -1.15 Total: -54.93 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.22 Total: -19.68 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.68 Total: 16.34 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.52 -8.83 -40.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.637 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds