Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09008 * 110.35032 * 2 1 4 4 C 1.54953 * 110.31083 * 237.86172 * 2 1 3 5 5 C 1.55302 * 100.97917 * 204.61436 * 4 2 1 6 6 H 1.09001 * 110.84778 * 275.96035 * 5 4 2 7 7 N 1.46500 * 110.84273 * 152.34396 * 5 4 2 8 8 C 1.34779 * 120.00240 * 86.45662 * 7 5 4 9 9 O 1.21347 * 119.99709 * 359.97438 * 8 7 5 10 10 C 1.49452 * 120.00218 * 179.97438 * 8 7 5 11 11 O 1.21349 * 119.99741 * 353.35696 * 10 8 7 12 12 N 1.34769 * 119.99902 * 173.35860 * 10 8 7 13 13 C 1.47085 * 120.88053 * 181.21907 * 12 10 8 14 14 C 1.53702 * 108.27546 * 128.74973 * 13 12 10 15 15 N 1.46901 * 109.25130 * 54.08582 * 14 13 12 16 16 C 1.46901 * 110.99659 * 172.60181 * 15 14 13 17 17 C 1.50704 * 109.46893 * 59.86849 * 16 15 14 18 18 H 1.08005 * 119.99975 * 355.55767 * 17 16 15 19 19 C 1.37880 * 119.99936 * 175.56801 * 17 16 15 20 20 N 1.31515 * 119.99690 * 179.97438 * 19 17 16 21 21 Si 1.86795 * 120.00064 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47202 * 90.00543 * 21 19 17 23 23 H 1.48503 * 109.47123 * 210.00389 * 21 19 17 24 24 H 1.48504 * 109.47414 * 330.00230 * 21 19 17 25 25 C 1.46895 * 111.27209 * 296.75185 * 15 14 13 26 26 C 1.47078 * 120.88444 * 1.49581 * 12 10 8 27 27 C 1.54499 * 102.20057 * 34.13242 * 5 4 2 28 28 H 1.09000 * 109.82634 * 98.16493 * 27 5 4 29 29 C 1.52999 * 109.89651 * 219.08691 * 27 5 4 30 30 O 1.43237 * 107.59987 * 338.64271 * 27 5 4 31 31 H 1.09002 * 109.46918 * 182.14384 * 1 2 3 32 32 H 1.08999 * 109.47465 * 302.13937 * 1 2 3 33 33 H 1.08999 * 109.47829 * 62.13888 * 1 2 3 34 34 H 1.08995 * 111.11997 * 322.55730 * 4 2 1 35 35 H 1.09005 * 111.12085 * 86.67166 * 4 2 1 36 36 H 0.97002 * 119.99969 * 266.45119 * 7 5 4 37 37 H 1.08993 * 109.63210 * 248.52210 * 13 12 10 38 38 H 1.08999 * 109.62679 * 9.10719 * 13 12 10 39 39 H 1.08994 * 109.65231 * 294.08614 * 14 13 12 40 40 H 1.09000 * 109.44067 * 173.95964 * 14 13 12 41 41 H 1.09003 * 109.47656 * 179.86297 * 16 15 14 42 42 H 1.08994 * 109.47866 * 299.86558 * 16 15 14 43 43 H 0.96997 * 119.99835 * 179.97438 * 20 19 17 44 44 H 1.08994 * 109.49461 * 303.14804 * 25 15 14 45 45 H 1.09004 * 109.51698 * 183.07984 * 25 15 14 46 46 H 1.08998 * 109.62921 * 350.89799 * 26 12 10 47 47 H 1.09003 * 109.62691 * 111.48106 * 26 12 10 48 48 H 1.09007 * 109.46863 * 179.64242 * 29 27 5 49 49 H 1.08998 * 109.47765 * 299.63956 * 29 27 5 50 50 H 1.08999 * 109.47378 * 59.64381 * 29 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9090 1.0220 0.0000 4 6 2.0678 -0.7730 -1.2305 5 6 3.4703 -1.2024 -0.7202 6 1 4.1975 -0.4037 -0.8664 7 7 3.9091 -2.4358 -1.3777 8 6 4.5491 -2.3771 -2.5624 9 8 4.7613 -1.3025 -3.0847 10 6 4.9972 -3.6354 -3.2328 11 8 4.8943 -4.6990 -2.6579 12 7 5.5158 -3.5887 -4.4759 13 6 5.9383 -4.8179 -5.1643 14 6 5.2855 -4.8399 -6.5556 15 7 5.6065 -3.5920 -7.2610 16 6 5.1510 -3.6441 -8.6567 17 6 3.6587 -3.8514 -8.6906 18 1 3.1142 -4.0077 -7.7710 19 6 2.9885 -3.8418 -9.8955 20 7 1.6863 -4.0232 -9.9251 21 14 3.9302 -3.5711 -11.4858 22 1 4.3748 -4.8805 -12.0269 23 1 3.0488 -2.9003 -12.4750 24 1 5.1157 -2.7170 -11.2200 25 6 5.0426 -2.4269 -6.5664 26 6 5.6797 -2.3067 -5.1779 27 6 3.2112 -1.4419 0.7840 28 1 3.0625 -2.5058 0.9687 29 6 4.3987 -0.9339 1.6042 30 8 2.0286 -0.7167 1.1406 31 1 -0.3633 -1.0270 0.0384 32 1 -0.3634 0.5467 0.8702 33 1 -0.3635 0.4802 -0.9085 34 1 1.4470 -1.6415 -1.4508 35 1 2.1487 -0.1203 -2.0998 36 1 3.7392 -3.2948 -0.9603 37 1 7.0235 -4.8264 -5.2654 38 1 5.6142 -5.6875 -4.5926 39 1 4.2044 -4.9313 -6.4518 40 1 5.6695 -5.6876 -7.1231 41 1 5.3990 -2.7070 -9.1551 42 1 5.6443 -4.4698 -9.1693 43 1 1.2148 -4.0161 -10.7727 44 1 3.9649 -2.5519 -6.4624 45 1 5.2504 -1.5244 -7.1413 46 1 5.1846 -1.5152 -4.6152 47 1 6.7406 -2.0784 -5.2803 48 1 4.2059 -1.1005 2.6641 49 1 5.3001 -1.4715 1.3101 50 1 4.5360 0.1321 1.4230 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333192258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -109.245337 kcal Electronic energy + Delta-G solvation = -30651.701445 eV Core-core repulsion = 26485.887521 eV Total energy + Delta-G solvation = -4165.813924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22016 -41.00094 -39.77924 -39.07342 -36.59526 -35.64521 -34.34077 -33.71826 -32.16971 -32.11398 -30.54748 -29.56351 -27.74683 -26.15068 -24.92595 -24.35370 -23.45912 -22.52440 -22.02611 -21.80073 -20.67175 -19.14286 -18.70691 -18.32338 -17.74065 -17.28194 -17.14600 -16.60168 -16.44800 -16.10612 -15.98134 -15.89818 -15.73010 -15.22960 -15.11209 -14.86736 -14.68090 -14.44661 -14.07598 -13.89351 -13.85014 -13.74718 -13.41404 -13.16442 -13.07530 -12.84365 -12.79394 -12.76695 -12.42875 -12.31400 -12.26189 -12.12794 -12.05948 -11.98277 -11.87980 -11.75189 -11.67151 -10.81896 -10.64515 -10.38310 -10.25747 -9.92869 -9.07436 -8.33590 -6.39915 0.20571 1.11082 1.36220 1.37601 1.49216 1.99366 2.26189 2.32732 2.66350 3.01608 3.13507 3.24499 3.34936 3.55253 3.80542 3.89481 3.94969 4.05003 4.09592 4.25160 4.29374 4.32870 4.38243 4.44819 4.50579 4.55939 4.65099 4.65993 4.73119 4.79721 4.83531 4.93860 4.95425 4.99335 5.02572 5.05825 5.09032 5.14976 5.21109 5.24462 5.26906 5.37418 5.46449 5.83156 5.98847 6.00001 6.15291 6.27955 6.30687 6.56600 6.66574 6.79443 7.27412 8.82876 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.002626 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.908754 B =10659.821113 C =11773.383627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.078 3.922 3 H 0.086 0.914 4 C -0.167 4.167 5 C 0.115 3.885 6 H 0.112 0.888 7 N -0.676 5.676 8 C 0.520 3.480 9 O -0.516 6.516 10 C 0.501 3.499 11 O -0.548 6.548 12 N -0.576 5.576 13 C 0.120 3.880 14 C 0.052 3.948 15 N -0.526 5.526 16 C 0.159 3.841 17 C -0.552 4.552 18 H 0.028 0.972 19 C 0.009 3.991 20 N -0.949 5.949 21 Si 0.953 3.047 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.241 1.241 25 C 0.052 3.948 26 C 0.071 3.929 27 C 0.076 3.924 28 H 0.093 0.907 29 C -0.159 4.159 30 O -0.383 6.383 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.421 0.579 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.008 0.992 40 H 0.089 0.911 41 H 0.038 0.962 42 H 0.035 0.965 43 H 0.266 0.734 44 H 0.006 0.994 45 H 0.086 0.914 46 H 0.154 0.846 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.076 0.924 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.497 7.658 21.662 23.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.021 3.979 3 H 0.103 0.897 4 C -0.206 4.206 5 C 0.011 3.989 6 H 0.130 0.870 7 N -0.329 5.329 8 C 0.301 3.699 9 O -0.393 6.393 10 C 0.284 3.716 11 O -0.427 6.427 12 N -0.308 5.308 13 C -0.002 4.002 14 C -0.078 4.078 15 N -0.249 5.249 16 C 0.031 3.969 17 C -0.591 4.591 18 H 0.046 0.954 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.776 3.224 22 H -0.191 1.191 23 H -0.213 1.213 24 H -0.164 1.164 25 C -0.078 4.078 26 C -0.050 4.050 27 C 0.018 3.982 28 H 0.111 0.889 29 C -0.217 4.217 30 O -0.303 6.303 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.259 0.741 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.027 0.973 40 H 0.107 0.893 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.025 0.975 45 H 0.104 0.896 46 H 0.170 0.830 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.095 0.905 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.878 7.908 21.704 24.102 hybrid contribution -1.360 -0.736 -1.242 1.983 sum 5.518 7.172 20.462 22.373 Atomic orbital electron populations 1.21894 0.92694 1.02894 1.03300 1.23004 0.95786 0.95743 0.83347 0.89665 1.23759 0.95509 1.01749 0.99547 1.22810 0.96988 0.86945 0.92187 0.87009 1.45605 1.56101 1.11284 1.19940 1.19999 0.78668 0.88904 0.82302 1.90359 1.56301 1.30845 1.61840 1.20156 0.79281 0.89407 0.82757 1.90722 1.56174 1.31241 1.64554 1.48211 1.58158 1.10403 1.13978 1.22041 1.00612 0.86565 0.90934 1.22356 0.97266 0.93846 0.94301 1.62496 1.57186 1.02389 1.02811 1.20115 0.91891 0.97506 0.87379 1.21900 0.94056 1.49749 0.93363 0.95363 1.25976 0.95557 0.93897 1.03422 1.70092 1.09731 1.51520 1.27618 0.85631 0.79256 0.79532 0.78019 1.19128 1.21270 1.16401 1.22306 0.95817 0.94702 0.94936 1.23360 1.03575 0.85976 0.92067 1.22927 0.86562 0.97488 0.91241 0.88931 1.22130 0.96395 1.02254 1.00878 1.88484 1.42052 1.65123 1.34639 0.92404 0.91225 0.90114 0.90228 0.89239 0.74102 0.88108 0.88741 0.97338 0.89293 0.94439 0.94719 0.92524 0.97539 0.89590 0.83029 0.89174 0.90962 0.90513 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.62 71.98 0.69 -1.36 16 2 C 0.08 1.19 4.07 31.26 0.13 1.32 16 3 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 4 C -0.17 -2.85 6.26 32.05 0.20 -2.65 16 5 C 0.12 1.89 2.81 46.29 0.13 2.02 16 6 H 0.11 1.88 7.43 -2.39 -0.02 1.86 16 7 N -0.68 -12.97 5.21 -437.72 -2.28 -15.25 16 8 C 0.52 13.17 7.80 87.27 0.68 13.85 16 9 O -0.52 -14.22 12.78 -3.24 -0.04 -14.26 16 10 C 0.50 14.86 7.77 87.27 0.68 15.54 16 11 O -0.55 -17.58 15.95 -3.24 -0.05 -17.63 16 12 N -0.58 -17.72 3.00 -818.62 -2.46 -20.17 16 13 C 0.12 3.63 6.62 86.50 0.57 4.20 16 14 C 0.05 1.94 5.18 86.54 0.45 2.39 16 15 N -0.53 -20.79 4.83 -898.88 -4.34 -25.13 16 16 C 0.16 7.27 4.20 85.56 0.36 7.63 16 17 C -0.55 -30.96 8.32 25.60 0.21 -30.75 16 18 H 0.03 1.80 6.12 -2.91 -0.02 1.78 16 19 C 0.01 0.54 5.47 84.66 0.46 1.00 16 20 N -0.95 -59.09 13.96 21.45 0.30 -58.79 16 21 Si 0.95 43.03 27.56 68.60 1.89 44.92 16 22 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 23 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.24 -9.94 6.42 99.48 0.64 -9.31 16 25 C 0.05 1.94 5.24 86.38 0.45 2.39 16 26 C 0.07 2.14 6.35 86.35 0.55 2.69 16 27 C 0.08 1.09 3.91 31.10 0.12 1.21 16 28 H 0.09 1.20 7.68 -2.39 -0.02 1.18 16 29 C -0.16 -1.86 9.45 71.98 0.68 -1.18 16 30 O -0.38 -6.70 10.70 -148.98 -1.59 -8.29 16 31 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.47 8.06 -2.39 -0.02 1.45 16 35 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.42 7.17 7.80 -92.71 -0.72 6.45 16 37 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.09 2.80 7.07 -2.39 -0.02 2.78 16 39 H 0.01 0.38 6.64 -2.39 -0.02 0.37 16 40 H 0.09 3.16 8.11 -2.39 -0.02 3.14 16 41 H 0.04 1.69 6.82 -2.39 -0.02 1.68 16 42 H 0.03 1.55 7.79 -2.39 -0.02 1.53 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.01 0.28 7.07 -2.39 -0.02 0.27 16 45 H 0.09 3.08 8.06 -2.39 -0.02 3.06 16 46 H 0.15 4.54 3.92 -75.03 -0.29 4.25 16 47 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 49 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 Total: -1.00 -69.27 389.99 -2.33 -71.60 By element: Atomic # 1 Polarization: 24.84 SS G_CDS: -0.13 Total: 24.71 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 6.37 Total: 18.29 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -8.78 Total: -119.35 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.69 Total: -40.18 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.89 Total: 44.92 kcal Total: -69.27 -2.33 -71.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333192258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.647 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds