Wall clock time and date at job start Sat Apr 11 2020 05:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 107.99823 * 2 1 4 4 C 1.55325 * 108.12835 * 243.40146 * 2 1 3 5 5 C 1.55185 * 108.87193 * 197.70941 * 4 2 1 6 6 O 1.39640 * 110.57546 * 322.14655 * 5 4 2 7 7 C 1.42382 * 108.63717 * 101.16691 * 6 5 4 8 8 C 1.46917 * 113.79042 * 267.46128 * 7 6 5 9 9 N 1.43425 * 108.12140 * 116.77302 * 2 1 3 10 10 C 1.34783 * 120.63715 * 31.09541 * 9 2 1 11 11 O 1.21343 * 119.99720 * 6.32550 * 10 9 2 12 12 C 1.49452 * 119.99787 * 186.32892 * 10 9 2 13 13 O 1.21348 * 120.00432 * 6.08032 * 12 10 9 14 14 N 1.34782 * 119.99617 * 186.07846 * 12 10 9 15 15 C 1.46498 * 119.99621 * 180.02562 * 14 12 10 16 16 C 1.53041 * 109.46050 * 275.02558 * 15 14 12 17 17 C 1.53188 * 109.31126 * 178.60473 * 16 15 14 18 18 N 1.46932 * 108.76637 * 54.65750 * 17 16 15 19 19 C 1.36938 * 120.63184 * 126.35990 * 18 17 16 20 20 H 1.07995 * 120.00310 * 207.91058 * 19 18 17 21 21 C 1.38817 * 119.99918 * 27.90574 * 19 18 17 22 22 N 1.31622 * 119.99806 * 22.71973 * 21 19 18 23 23 Si 1.86799 * 120.00292 * 202.71710 * 21 19 18 24 24 H 1.48497 * 109.46743 * 94.98712 * 23 21 19 25 25 H 1.48497 * 109.47373 * 214.99218 * 23 21 19 26 26 H 1.48501 * 109.46564 * 334.99077 * 23 21 19 27 27 C 1.46922 * 118.73780 * 306.38054 * 18 17 16 28 28 C 1.53048 * 109.45849 * 154.97392 * 15 14 12 29 29 H 1.08999 * 109.47053 * 285.58164 * 1 2 3 30 30 H 1.08998 * 109.47230 * 165.57282 * 1 2 3 31 31 H 1.09000 * 109.46737 * 45.57708 * 1 2 3 32 32 H 1.08996 * 109.57080 * 317.53245 * 4 2 1 33 33 H 1.08997 * 109.56821 * 77.89742 * 4 2 1 34 34 H 1.08998 * 109.25805 * 201.86502 * 5 4 2 35 35 H 1.08999 * 109.25933 * 82.43091 * 5 4 2 36 36 H 1.09003 * 108.61989 * 146.34140 * 7 6 5 37 37 H 1.09006 * 108.61448 * 28.57679 * 7 6 5 38 38 H 1.09001 * 109.98574 * 297.48250 * 8 7 6 39 39 H 1.09002 * 110.06363 * 176.16768 * 8 7 6 40 40 H 0.96996 * 120.00170 * 0.02562 * 14 12 10 41 41 H 1.08997 * 109.46518 * 35.00131 * 15 14 12 42 42 H 1.09004 * 109.49492 * 298.56729 * 16 15 14 43 43 H 1.08997 * 109.49732 * 58.66333 * 16 15 14 44 44 H 1.08997 * 109.60370 * 294.86459 * 17 16 15 45 45 H 1.09004 * 109.69921 * 174.50272 * 17 16 15 46 46 H 0.97002 * 119.99829 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.58710 * 293.82527 * 27 18 17 48 48 H 1.08999 * 109.70419 * 173.46728 * 27 18 17 49 49 H 1.08997 * 109.49328 * 301.33827 * 28 15 14 50 50 H 1.09000 * 109.49818 * 61.42767 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8668 1.0367 0.0000 4 6 2.0133 -0.6609 -1.3199 5 6 3.4989 -1.0790 -1.1573 6 8 4.1990 -0.1248 -0.4162 7 6 4.3417 -0.6002 0.9184 8 6 3.2716 -0.1578 1.8227 9 7 1.9761 -0.6140 1.2170 10 6 1.2459 -1.5819 1.8058 11 8 0.2614 -2.0223 1.2497 12 6 1.6489 -2.1127 3.1435 13 8 2.5661 -1.5985 3.7491 14 7 0.9935 -3.1625 3.6772 15 6 1.3881 -3.6825 4.9887 16 6 2.5402 -4.6753 4.8180 17 6 2.9732 -5.1903 6.1942 18 7 1.7987 -5.7420 6.8834 19 6 1.8192 -7.0155 7.3864 20 1 0.9004 -7.5762 7.4745 21 6 3.0211 -7.5858 7.7831 22 7 4.0398 -6.8170 8.1047 23 14 3.1926 -9.4443 7.8604 24 1 3.7837 -9.9400 6.5915 25 1 4.0761 -9.8131 8.9955 26 1 1.8540 -10.0571 8.0555 27 6 0.6016 -4.9016 7.0222 28 6 0.1954 -4.3895 5.6368 29 1 -0.3633 0.2760 0.9899 30 1 -0.3633 -0.9952 -0.2560 31 1 -0.3633 0.7193 -0.7340 32 1 1.4069 -1.5418 -1.5305 33 1 1.9223 0.0517 -2.1397 34 1 3.9553 -1.1747 -2.1425 35 1 3.5480 -2.0395 -0.6443 36 1 5.2964 -0.2513 1.3119 37 1 4.3536 -1.6900 0.9001 38 1 3.2811 0.9289 1.9076 39 1 3.4027 -0.6092 2.8061 40 1 0.2605 -3.5738 3.1929 41 1 1.7106 -2.8578 5.6243 42 1 2.2106 -5.5128 4.2030 43 1 3.3809 -4.1774 4.3350 44 1 3.3873 -4.3687 6.7785 45 1 3.7261 -5.9695 6.0747 46 1 4.8795 -7.2155 8.3823 47 1 0.8223 -4.0562 7.6741 48 1 -0.2122 -5.4885 7.4479 49 1 -0.6329 -3.6880 5.7366 50 1 -0.1119 -5.2296 5.0140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334516842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:58 Heat of formation + Delta-G solvation = -56.417715 kcal Electronic energy + Delta-G solvation = -31316.717680 eV Core-core repulsion = 27153.194534 eV Total energy + Delta-G solvation = -4163.523147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.42526 -39.74254 -38.69079 -37.51585 -35.97166 -34.62385 -33.66983 -32.21203 -30.22636 -29.76148 -29.43870 -29.22521 -25.88772 -24.66016 -23.91427 -22.94863 -22.38682 -22.09584 -21.03834 -20.02481 -19.13587 -17.86320 -17.22463 -16.83796 -16.79809 -16.17406 -15.82921 -15.79034 -15.60872 -15.05303 -14.82572 -14.44260 -14.35751 -13.84914 -13.63343 -13.41453 -13.29529 -13.13569 -13.03457 -12.91311 -12.67242 -12.50946 -12.20661 -11.94687 -11.71860 -11.56474 -11.36493 -11.22379 -11.09883 -11.02419 -10.77693 -10.50170 -10.43105 -10.29718 -10.17873 -9.99774 -9.84046 -9.71801 -9.10869 -8.97683 -8.93392 -8.48449 -6.77107 -5.85786 -3.25028 1.33399 2.22301 3.12143 3.28902 3.35746 3.43558 3.44542 3.70977 4.21719 4.46202 4.49800 4.53378 4.71190 4.83249 4.98217 5.08375 5.13848 5.15766 5.22785 5.30171 5.35424 5.37161 5.46818 5.48904 5.51543 5.54663 5.62987 5.69415 5.72356 5.80793 5.95962 5.97129 6.15282 6.23719 6.30018 6.38142 6.45664 6.54788 6.66164 6.70929 6.80048 6.85097 6.95011 7.21708 7.26857 7.52433 7.71424 7.77316 8.00210 8.37943 9.14003 9.78377 10.35182 11.23131 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.002583 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.235831 B =10835.625628 C =11408.974468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.082 0.918 4 C -0.155 4.155 5 C 0.051 3.949 6 O -0.358 6.358 7 C 0.034 3.966 8 C 0.028 3.972 9 N -0.578 5.578 10 C 0.508 3.492 11 O -0.515 6.515 12 C 0.505 3.495 13 O -0.515 6.515 14 N -0.685 5.685 15 C 0.147 3.853 16 C -0.147 4.147 17 C 0.175 3.825 18 N -0.591 5.591 19 C -0.260 4.260 20 H 0.067 0.933 21 C 0.006 3.994 22 N -0.895 5.895 23 Si 0.898 3.102 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.149 3.851 28 C -0.140 4.140 29 H 0.053 0.947 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.174 0.826 40 H 0.408 0.592 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.023 0.977 45 H 0.084 0.916 46 H 0.254 0.746 47 H 0.021 0.979 48 H 0.060 0.940 49 H 0.058 0.942 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 14.167 -17.074 22.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.100 0.900 4 C -0.194 4.194 5 C -0.027 4.027 6 O -0.276 6.276 7 C -0.043 4.043 8 C -0.092 4.092 9 N -0.312 5.312 10 C 0.291 3.709 11 O -0.391 6.391 12 C 0.286 3.714 13 O -0.393 6.393 14 N -0.335 5.335 15 C 0.044 3.956 16 C -0.187 4.187 17 C 0.049 3.951 18 N -0.314 5.314 19 C -0.389 4.389 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.538 5.538 23 Si 0.728 3.272 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.203 1.203 27 C 0.022 3.978 28 C -0.180 4.180 29 H 0.072 0.928 30 H 0.107 0.893 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.113 0.887 37 H 0.077 0.923 38 H 0.099 0.901 39 H 0.189 0.811 40 H 0.244 0.756 41 H 0.106 0.894 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.039 0.961 48 H 0.079 0.921 49 H 0.077 0.923 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.334 14.412 -16.908 22.465 hybrid contribution -0.209 -1.188 -0.306 1.245 sum -3.543 13.224 -17.214 21.994 Atomic orbital electron populations 1.22404 0.93814 1.03979 1.01767 1.20769 0.95254 0.96570 0.83660 0.89978 1.23388 0.96792 1.01973 0.97239 1.22647 0.91644 0.91520 0.96889 1.87694 1.75031 1.43836 1.21001 1.21994 0.99428 0.99274 0.83651 1.23489 0.80426 1.02487 1.02763 1.48041 1.23270 1.36658 1.23243 1.20251 0.83772 0.80446 0.86436 1.90714 1.26620 1.57386 1.64396 1.20145 0.83209 0.81428 0.86577 1.90276 1.28976 1.58219 1.61872 1.46242 1.35324 1.30589 1.21364 1.21277 0.96244 0.96761 0.81297 1.22579 0.96564 0.97589 1.01957 1.20693 0.90070 0.97408 0.86935 1.44113 1.10773 1.12616 1.63894 1.19156 0.94046 0.88784 1.36926 0.91547 1.25014 0.97711 0.98022 0.98587 1.70110 1.03753 1.33718 1.46228 0.86343 0.77694 0.85929 0.77258 1.21446 1.21809 1.20313 1.20834 0.91112 0.94115 0.91742 1.22373 0.95855 0.99469 1.00333 0.92783 0.89338 0.92799 0.90535 0.90106 0.90473 0.92648 0.88738 0.92312 0.90138 0.81063 0.75591 0.89383 0.92311 0.92715 0.95872 0.89800 0.93565 0.96076 0.92101 0.92314 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 7.74 37.16 0.29 -1.33 16 2 C 0.14 1.39 2.33 -68.32 -0.16 1.24 16 3 H 0.08 0.77 7.98 -51.93 -0.41 0.36 16 4 C -0.15 -1.33 6.07 -24.34 -0.15 -1.48 16 5 C 0.05 0.46 6.38 38.31 0.24 0.70 16 6 O -0.36 -3.64 10.24 -31.94 -0.33 -3.97 16 7 C 0.03 0.32 6.01 34.24 0.21 0.52 16 8 C 0.03 0.28 6.16 -4.94 -0.03 0.25 16 9 N -0.58 -6.41 2.52 -167.77 -0.42 -6.84 16 10 C 0.51 6.52 7.16 -11.58 -0.08 6.44 16 11 O -0.52 -7.13 13.22 5.50 0.07 -7.06 16 12 C 0.51 7.02 7.75 -11.58 -0.09 6.93 16 13 O -0.51 -7.82 12.72 5.50 0.07 -7.75 16 14 N -0.69 -9.42 5.07 -54.19 -0.27 -9.69 16 15 C 0.15 2.36 2.42 -67.89 -0.16 2.20 16 16 C -0.15 -2.70 5.65 -26.61 -0.15 -2.85 16 17 C 0.18 4.03 5.35 -3.71 -0.02 4.01 16 18 N -0.59 -14.19 2.99 -172.32 -0.51 -14.70 16 19 C -0.26 -6.92 9.54 -15.06 -0.14 -7.06 16 20 H 0.07 1.74 7.93 -52.49 -0.42 1.32 16 21 C 0.01 0.17 4.75 -17.43 -0.08 0.09 16 22 N -0.89 -25.52 11.57 55.49 0.64 -24.88 16 23 Si 0.90 21.23 29.61 -169.99 -5.03 16.19 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 C 0.15 2.93 6.51 -3.71 -0.02 2.91 16 28 C -0.14 -2.22 5.55 -26.61 -0.15 -2.36 16 29 H 0.05 0.60 7.64 -51.93 -0.40 0.20 16 30 H 0.09 1.02 5.94 -51.93 -0.31 0.71 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.69 7.82 -51.93 -0.41 0.28 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.53 6.66 -51.93 -0.35 0.18 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.58 6.77 -51.93 -0.35 0.23 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.17 2.02 3.87 -56.51 -0.22 1.80 16 40 H 0.41 5.07 8.09 -40.82 -0.33 4.74 16 41 H 0.09 1.53 7.58 -51.93 -0.39 1.14 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.08 2.17 6.23 -51.93 -0.32 1.84 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.06 1.17 7.94 -51.93 -0.41 0.75 16 49 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 380.94 15.07 5.74 5.74 Total: -1.00 -29.53 380.94 -8.65 -38.19 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -8.10 Total: 4.58 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -0.50 Total: 10.19 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.57 Total: -56.11 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.18 Total: -18.78 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.53 -8.65 -38.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334516842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.229 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds