Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 107.99823 * 2 1 4 4 C 1.55325 * 108.12835 * 243.40146 * 2 1 3 5 5 C 1.55185 * 108.87193 * 197.70941 * 4 2 1 6 6 O 1.39640 * 110.57546 * 322.14655 * 5 4 2 7 7 C 1.42382 * 108.63717 * 101.16691 * 6 5 4 8 8 C 1.46917 * 113.79042 * 267.46128 * 7 6 5 9 9 N 1.43425 * 108.12140 * 116.77302 * 2 1 3 10 10 C 1.34783 * 120.63715 * 31.09541 * 9 2 1 11 11 O 1.21343 * 119.99720 * 6.32550 * 10 9 2 12 12 C 1.49452 * 119.99787 * 186.32892 * 10 9 2 13 13 O 1.21348 * 120.00432 * 6.08032 * 12 10 9 14 14 N 1.34782 * 119.99617 * 186.07846 * 12 10 9 15 15 C 1.46498 * 119.99621 * 180.02562 * 14 12 10 16 16 C 1.53041 * 109.46050 * 275.02558 * 15 14 12 17 17 C 1.53188 * 109.31126 * 178.60473 * 16 15 14 18 18 N 1.46932 * 108.76637 * 54.65750 * 17 16 15 19 19 C 1.36938 * 120.63184 * 126.35990 * 18 17 16 20 20 H 1.07995 * 120.00310 * 207.91058 * 19 18 17 21 21 C 1.38817 * 119.99918 * 27.90574 * 19 18 17 22 22 N 1.31622 * 119.99806 * 22.71973 * 21 19 18 23 23 Si 1.86799 * 120.00292 * 202.71710 * 21 19 18 24 24 H 1.48497 * 109.46743 * 94.98712 * 23 21 19 25 25 H 1.48497 * 109.47373 * 214.99218 * 23 21 19 26 26 H 1.48501 * 109.46564 * 334.99077 * 23 21 19 27 27 C 1.46922 * 118.73780 * 306.38054 * 18 17 16 28 28 C 1.53048 * 109.45849 * 154.97392 * 15 14 12 29 29 H 1.08999 * 109.47053 * 285.58164 * 1 2 3 30 30 H 1.08998 * 109.47230 * 165.57282 * 1 2 3 31 31 H 1.09000 * 109.46737 * 45.57708 * 1 2 3 32 32 H 1.08996 * 109.57080 * 317.53245 * 4 2 1 33 33 H 1.08997 * 109.56821 * 77.89742 * 4 2 1 34 34 H 1.08998 * 109.25805 * 201.86502 * 5 4 2 35 35 H 1.08999 * 109.25933 * 82.43091 * 5 4 2 36 36 H 1.09003 * 108.61989 * 146.34140 * 7 6 5 37 37 H 1.09006 * 108.61448 * 28.57679 * 7 6 5 38 38 H 1.09001 * 109.98574 * 297.48250 * 8 7 6 39 39 H 1.09002 * 110.06363 * 176.16768 * 8 7 6 40 40 H 0.96996 * 120.00170 * 0.02562 * 14 12 10 41 41 H 1.08997 * 109.46518 * 35.00131 * 15 14 12 42 42 H 1.09004 * 109.49492 * 298.56729 * 16 15 14 43 43 H 1.08997 * 109.49732 * 58.66333 * 16 15 14 44 44 H 1.08997 * 109.60370 * 294.86459 * 17 16 15 45 45 H 1.09004 * 109.69921 * 174.50272 * 17 16 15 46 46 H 0.97002 * 119.99829 * 179.97438 * 22 21 19 47 47 H 1.09006 * 109.58710 * 293.82527 * 27 18 17 48 48 H 1.08999 * 109.70419 * 173.46728 * 27 18 17 49 49 H 1.08997 * 109.49328 * 301.33827 * 28 15 14 50 50 H 1.09000 * 109.49818 * 61.42767 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8668 1.0367 0.0000 4 6 2.0133 -0.6609 -1.3199 5 6 3.4989 -1.0790 -1.1573 6 8 4.1990 -0.1248 -0.4162 7 6 4.3417 -0.6002 0.9184 8 6 3.2716 -0.1578 1.8227 9 7 1.9761 -0.6140 1.2170 10 6 1.2459 -1.5819 1.8058 11 8 0.2614 -2.0223 1.2497 12 6 1.6489 -2.1127 3.1435 13 8 2.5661 -1.5985 3.7491 14 7 0.9935 -3.1625 3.6772 15 6 1.3881 -3.6825 4.9887 16 6 2.5402 -4.6753 4.8180 17 6 2.9732 -5.1903 6.1942 18 7 1.7987 -5.7420 6.8834 19 6 1.8192 -7.0155 7.3864 20 1 0.9004 -7.5762 7.4745 21 6 3.0211 -7.5858 7.7831 22 7 4.0398 -6.8170 8.1047 23 14 3.1926 -9.4443 7.8604 24 1 3.7837 -9.9400 6.5915 25 1 4.0761 -9.8131 8.9955 26 1 1.8540 -10.0571 8.0555 27 6 0.6016 -4.9016 7.0222 28 6 0.1954 -4.3895 5.6368 29 1 -0.3633 0.2760 0.9899 30 1 -0.3633 -0.9952 -0.2560 31 1 -0.3633 0.7193 -0.7340 32 1 1.4069 -1.5418 -1.5305 33 1 1.9223 0.0517 -2.1397 34 1 3.9553 -1.1747 -2.1425 35 1 3.5480 -2.0395 -0.6443 36 1 5.2964 -0.2513 1.3119 37 1 4.3536 -1.6900 0.9001 38 1 3.2811 0.9289 1.9076 39 1 3.4027 -0.6092 2.8061 40 1 0.2605 -3.5738 3.1929 41 1 1.7106 -2.8578 5.6243 42 1 2.2106 -5.5128 4.2030 43 1 3.3809 -4.1774 4.3350 44 1 3.3873 -4.3687 6.7785 45 1 3.7261 -5.9695 6.0747 46 1 4.8795 -7.2155 8.3823 47 1 0.8223 -4.0562 7.6741 48 1 -0.2122 -5.4885 7.4479 49 1 -0.6329 -3.6880 5.7366 50 1 -0.1119 -5.2296 5.0140 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334516842.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -75.910820 kcal Electronic energy + Delta-G solvation = -31317.562965 eV Core-core repulsion = 27153.194534 eV Total energy + Delta-G solvation = -4164.368431 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.39101 -40.76662 -39.68021 -38.96527 -36.94540 -36.01775 -34.50731 -33.92254 -31.83421 -31.34329 -30.38624 -29.96734 -27.38240 -25.98431 -24.79776 -23.96647 -23.95488 -23.30337 -22.16665 -21.32606 -20.41286 -18.98052 -18.58365 -18.06575 -17.73487 -17.23566 -16.91452 -16.73533 -16.60498 -16.48116 -15.94688 -15.70603 -15.47983 -15.38193 -15.21008 -14.78807 -14.45300 -14.21531 -14.11287 -14.00455 -13.88493 -13.70375 -13.22154 -13.10730 -13.00539 -12.76850 -12.64318 -12.62038 -12.49998 -12.16995 -12.11047 -12.04820 -11.85196 -11.78619 -11.58934 -11.36994 -11.31370 -10.74905 -10.57381 -10.22009 -10.07629 -9.86011 -8.73411 -7.90043 -5.31638 0.27848 1.22018 1.47306 1.49725 1.58354 2.06600 2.29339 2.51793 2.98099 3.16409 3.25559 3.65917 3.76405 3.78339 3.81964 4.00062 4.00793 4.07016 4.25093 4.27414 4.32389 4.35569 4.44589 4.49250 4.60087 4.65115 4.69325 4.73258 4.79064 4.81697 4.83858 4.94019 4.98420 4.99654 5.03533 5.08294 5.12505 5.18067 5.30350 5.40690 5.44483 5.57769 5.63539 5.68894 5.92983 6.13338 6.18798 6.37423 6.71902 6.92821 7.12840 7.84215 8.36652 9.17178 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019808 B = 0.002583 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.235831 B =10835.625628 C =11408.974468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.135 3.865 3 H 0.091 0.909 4 C -0.149 4.149 5 C 0.047 3.953 6 O -0.365 6.365 7 C 0.035 3.965 8 C 0.030 3.970 9 N -0.573 5.573 10 C 0.510 3.490 11 O -0.527 6.527 12 C 0.505 3.495 13 O -0.529 6.529 14 N -0.678 5.678 15 C 0.160 3.840 16 C -0.131 4.131 17 C 0.184 3.816 18 N -0.609 5.609 19 C -0.265 4.265 20 H 0.070 0.930 21 C -0.047 4.047 22 N -0.930 5.930 23 Si 0.961 3.039 24 H -0.288 1.288 25 H -0.297 1.297 26 H -0.266 1.266 27 C 0.143 3.857 28 C -0.125 4.125 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.110 0.890 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.418 0.582 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.057 0.943 44 H -0.001 1.001 45 H 0.049 0.951 46 H 0.250 0.750 47 H 0.017 0.983 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.868 14.943 -18.968 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 H 0.109 0.891 4 C -0.188 4.188 5 C -0.030 4.030 6 O -0.283 6.283 7 C -0.042 4.042 8 C -0.089 4.089 9 N -0.306 5.306 10 C 0.292 3.708 11 O -0.404 6.404 12 C 0.287 3.713 13 O -0.408 6.408 14 N -0.329 5.329 15 C 0.056 3.944 16 C -0.171 4.171 17 C 0.057 3.943 18 N -0.333 5.333 19 C -0.395 4.395 20 H 0.088 0.912 21 C -0.243 4.243 22 N -0.576 5.576 23 Si 0.790 3.210 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.190 1.190 27 C 0.017 3.983 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.128 0.872 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.175 0.825 40 H 0.255 0.745 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.017 0.983 45 H 0.067 0.933 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.084 0.916 49 H 0.109 0.891 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.563 15.212 -18.835 24.637 hybrid contribution 0.162 -1.333 0.279 1.371 sum -4.401 13.880 -18.556 23.587 Atomic orbital electron populations 1.22310 0.93842 1.03606 1.01494 1.20964 0.95243 0.97039 0.83596 0.89059 1.23365 0.96279 1.02196 0.96969 1.22739 0.91986 0.90881 0.97433 1.87683 1.75235 1.44240 1.21139 1.21983 0.99831 0.98871 0.83509 1.23437 0.80179 1.03137 1.02136 1.48142 1.23169 1.35812 1.23523 1.19997 0.83907 0.80930 0.85948 1.90722 1.27174 1.58022 1.64523 1.20421 0.82776 0.81146 0.86987 1.90314 1.29478 1.58613 1.62417 1.45981 1.35649 1.30724 1.20525 1.20915 0.95487 0.95681 0.82337 1.22321 0.97782 0.98183 0.98831 1.20437 0.89426 0.95411 0.88985 1.44369 1.12041 1.12699 1.64154 1.19497 0.94129 0.90091 1.35808 0.91236 1.25750 0.97648 1.01861 0.99080 1.70242 1.04083 1.35255 1.47997 0.85346 0.77810 0.81194 0.76698 1.21449 1.22403 1.19048 1.21010 0.89563 0.93472 0.94225 1.22179 0.96386 1.00256 0.97667 0.94191 0.90846 0.90735 0.90976 0.88198 0.88885 0.93577 0.87241 0.93028 0.88761 0.82459 0.74472 0.90564 0.92214 0.92420 0.98312 0.93252 0.94099 0.96491 0.91603 0.89054 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 7.74 71.98 0.56 -2.26 16 2 C 0.14 2.38 2.33 46.36 0.11 2.49 16 3 H 0.09 1.47 7.98 -2.39 -0.02 1.46 16 4 C -0.15 -2.22 6.07 32.14 0.19 -2.03 16 5 C 0.05 0.75 6.38 72.73 0.46 1.22 16 6 O -0.37 -6.68 10.24 -137.19 -1.40 -8.08 16 7 C 0.04 0.61 6.01 70.09 0.42 1.03 16 8 C 0.03 0.57 6.16 83.79 0.52 1.08 16 9 N -0.57 -11.87 2.52 -803.06 -2.02 -13.90 16 10 C 0.51 12.45 7.16 87.27 0.63 13.07 16 11 O -0.53 -13.90 13.22 -3.22 -0.04 -13.94 16 12 C 0.50 13.48 7.75 87.27 0.68 14.15 16 13 O -0.53 -15.73 12.72 -3.24 -0.04 -15.78 16 14 N -0.68 -17.55 5.07 -443.72 -2.25 -19.80 16 15 C 0.16 4.95 2.42 45.02 0.11 5.05 16 16 C -0.13 -4.82 5.65 30.67 0.17 -4.64 16 17 C 0.18 8.71 5.35 86.36 0.46 9.17 16 18 N -0.61 -29.51 2.99 -699.09 -2.09 -31.60 16 19 C -0.27 -14.21 9.54 84.03 0.80 -13.41 16 20 H 0.07 3.61 7.93 -2.91 -0.02 3.59 16 21 C -0.05 -2.60 4.75 84.86 0.40 -2.20 16 22 N -0.93 -54.76 11.57 21.65 0.25 -54.50 16 23 Si 0.96 44.21 29.61 68.60 2.03 46.24 16 24 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 27 C 0.14 5.51 6.51 86.36 0.56 6.08 16 28 C -0.13 -3.70 5.55 30.67 0.17 -3.53 16 29 H 0.04 0.83 7.64 -2.39 -0.02 0.81 16 30 H 0.07 1.58 5.94 -2.39 -0.01 1.57 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.16 7.82 -2.39 -0.02 1.14 16 33 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.05 0.82 6.66 -2.39 -0.02 0.80 16 36 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.05 0.97 6.77 -2.38 -0.02 0.96 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.51 16 39 H 0.16 3.57 3.87 -74.94 -0.29 3.28 16 40 H 0.42 9.48 8.09 -92.71 -0.75 8.73 16 41 H 0.08 2.60 7.58 -2.39 -0.02 2.58 16 42 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 43 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 45 H 0.05 2.66 6.23 -2.38 -0.01 2.64 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.49 16 47 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.07 2.44 7.94 -2.39 -0.02 2.42 16 49 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.24 380.94 0.59 -63.65 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.08 Total: 22.43 kcal Atomic # 6 Polarization: 19.04 SS G_CDS: 6.24 Total: 25.28 kcal Atomic # 7 Polarization: -113.69 SS G_CDS: -6.11 Total: -119.80 kcal Atomic # 8 Polarization: -36.31 SS G_CDS: -1.49 Total: -37.80 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.24 0.59 -63.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334516842.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.264 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds