Wall clock time and date at job start Sat Apr 11 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.92354 * 2 1 4 4 C 1.46924 * 109.87353 * 121.02831 * 2 1 3 5 5 C 1.52680 * 113.62507 * 177.43763 * 4 2 1 6 6 O 1.39715 * 106.08892 * 271.71896 * 5 4 2 7 7 C 1.44957 * 115.12826 * 98.22191 * 6 5 4 8 8 C 1.54413 * 110.76569 * 320.85149 * 7 6 5 9 9 N 1.43751 * 115.49158 * 318.57656 * 8 7 6 10 10 C 1.34781 * 120.42721 * 267.77215 * 9 8 7 11 11 O 1.21348 * 119.99526 * 185.42776 * 10 9 8 12 12 C 1.49442 * 120.00254 * 5.41922 * 10 9 8 13 13 O 1.21350 * 119.99977 * 4.70137 * 12 10 9 14 14 N 1.34774 * 120.00106 * 184.69290 * 12 10 9 15 15 C 1.46509 * 120.00157 * 180.02562 * 14 12 10 16 16 C 1.53038 * 109.45849 * 275.02862 * 15 14 12 17 17 C 1.53192 * 109.31278 * 178.59542 * 16 15 14 18 18 N 1.46931 * 108.76162 * 54.66224 * 17 16 15 19 19 C 1.36932 * 120.63674 * 126.40188 * 18 17 16 20 20 H 1.07999 * 119.99599 * 335.24962 * 19 18 17 21 21 C 1.38812 * 120.00185 * 155.24383 * 19 18 17 22 22 N 1.31621 * 119.99992 * 161.40673 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 341.40302 * 21 19 18 24 24 H 1.48499 * 109.47192 * 95.01531 * 23 21 19 25 25 H 1.48505 * 109.47194 * 215.01130 * 23 21 19 26 26 H 1.48507 * 109.47302 * 335.01355 * 23 21 19 27 27 C 1.46931 * 118.73261 * 306.38134 * 18 17 16 28 28 C 1.53041 * 109.46036 * 154.97415 * 15 14 12 29 29 H 1.08993 * 109.47732 * 186.60652 * 1 2 3 30 30 H 1.09007 * 109.47200 * 306.60586 * 1 2 3 31 31 H 1.09005 * 109.47217 * 66.60079 * 1 2 3 32 32 H 1.09000 * 108.65723 * 298.50940 * 4 2 1 33 33 H 1.09005 * 108.65431 * 56.37173 * 4 2 1 34 34 H 1.08990 * 110.12612 * 152.57078 * 5 4 2 35 35 H 1.09003 * 110.12127 * 30.85608 * 5 4 2 36 36 H 1.09000 * 109.22261 * 200.51559 * 7 6 5 37 37 H 1.08998 * 109.21428 * 81.17718 * 7 6 5 38 38 H 1.09001 * 108.27854 * 197.01620 * 8 7 6 39 39 H 1.09000 * 108.13189 * 80.02680 * 8 7 6 40 40 H 0.97001 * 120.00184 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.45444 * 35.00275 * 15 14 12 42 42 H 1.08994 * 109.50134 * 298.56590 * 16 15 14 43 43 H 1.09011 * 109.49645 * 58.66323 * 16 15 14 44 44 H 1.08996 * 109.60104 * 294.87126 * 17 16 15 45 45 H 1.09000 * 109.70101 * 174.50539 * 17 16 15 46 46 H 0.97003 * 119.99965 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.58793 * 293.82038 * 27 18 17 48 48 H 1.09003 * 109.69905 * 173.46781 * 27 18 17 49 49 H 1.09001 * 109.49776 * 301.33764 * 28 15 14 50 50 H 1.08998 * 109.49356 * 61.43552 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9014 1.0248 0.0000 4 6 2.0294 -0.7122 1.1840 5 6 3.5516 -0.8176 1.2378 6 8 3.8838 -1.9834 0.5432 7 6 4.2982 -1.7839 -0.8315 8 6 3.4451 -0.6883 -1.5070 9 7 2.0395 -0.7265 -1.2081 10 6 1.1907 -1.4066 -2.0042 11 8 -0.0047 -1.3533 -1.8023 12 6 1.7217 -2.2262 -3.1354 13 8 2.9196 -2.3485 -3.2861 14 7 0.8702 -2.8295 -3.9883 15 6 1.3907 -3.6333 -5.0970 16 6 1.7041 -2.7210 -6.2851 17 6 2.2808 -3.5599 -7.4298 18 7 1.3433 -4.6489 -7.7365 19 6 0.8874 -4.8382 -9.0137 20 1 0.8686 -4.0115 -9.7084 21 6 0.4497 -6.0926 -9.4157 22 7 -0.3134 -6.2131 -10.4813 23 14 0.9437 -7.6098 -8.4443 24 1 -0.1242 -7.9414 -7.4671 25 1 1.1360 -8.7518 -9.3738 26 1 2.2121 -7.3423 -7.7196 27 6 0.9047 -5.5312 -6.6466 28 6 0.3437 -4.6702 -5.5105 29 1 -0.3634 -1.0207 0.1182 30 1 -0.3634 0.6128 0.8250 31 1 -0.3634 0.4081 -0.9432 32 1 1.6844 -0.1900 2.0764 33 1 1.6100 -1.7184 1.1884 34 1 3.8862 -0.8894 2.2726 35 1 4.0047 0.0484 0.7552 36 1 4.1822 -2.7184 -1.3805 37 1 5.3462 -1.4851 -0.8505 38 1 3.5676 -0.7765 -2.5865 39 1 3.8338 0.2824 -1.1989 40 1 -0.0874 -2.7315 -3.8680 41 1 2.3008 -4.1426 -4.7802 42 1 0.7896 -2.2303 -6.6182 43 1 2.4323 -1.9680 -5.9834 44 1 3.2411 -3.9783 -7.1286 45 1 2.4154 -2.9343 -8.3122 46 1 -0.6196 -7.0897 -10.7619 47 1 1.7528 -6.1104 -6.2815 48 1 0.1301 -6.2067 -7.0098 49 1 0.1036 -5.3049 -4.6574 50 1 -0.5578 -4.1610 -5.8510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334516852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:02 Heat of formation + Delta-G solvation = -54.149406 kcal Electronic energy + Delta-G solvation = -31403.481376 eV Core-core repulsion = 27240.056590 eV Total energy + Delta-G solvation = -4163.424786 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44883 -39.67470 -38.59729 -37.72756 -36.03269 -34.86100 -33.90094 -32.21285 -30.54855 -30.25388 -29.53142 -29.11723 -25.92721 -24.59496 -24.41473 -23.11127 -22.51792 -21.79376 -21.25697 -20.09522 -19.39206 -17.97156 -17.30214 -16.91225 -16.82194 -16.48246 -15.83079 -15.73248 -15.55378 -15.26034 -14.92584 -14.69894 -14.23610 -14.05932 -13.90445 -13.64850 -13.51101 -13.14125 -13.00012 -12.86310 -12.73345 -12.45191 -12.29335 -12.13676 -12.04611 -11.86745 -11.70103 -11.61390 -11.11799 -10.95757 -10.86992 -10.79996 -10.61789 -10.34762 -10.07813 -9.87391 -9.82515 -9.45929 -9.14752 -9.09214 -8.93719 -8.70087 -7.06334 -5.95523 -3.32141 1.31480 2.08995 3.07641 3.24856 3.28854 3.46886 3.48326 3.62873 4.22443 4.31120 4.46607 4.49570 4.52807 4.68840 4.76981 4.89324 4.91164 5.03716 5.06059 5.15106 5.20804 5.23743 5.34369 5.38751 5.48286 5.49169 5.57065 5.65889 5.74072 5.75723 5.86311 5.95305 5.96505 5.97808 6.09368 6.20587 6.25151 6.29612 6.47601 6.50636 6.57995 6.60329 6.78070 6.84902 7.04286 7.23395 7.61976 7.89990 7.94725 8.29828 8.89718 9.68968 10.04213 11.20315 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.002585 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.705590 B =10830.371481 C =11137.240569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.147 3.853 3 H 0.082 0.918 4 C -0.173 4.173 5 C 0.066 3.934 6 O -0.385 6.385 7 C 0.048 3.952 8 C 0.062 3.938 9 N -0.576 5.576 10 C 0.510 3.490 11 O -0.513 6.513 12 C 0.502 3.498 13 O -0.521 6.521 14 N -0.689 5.689 15 C 0.149 3.851 16 C -0.142 4.142 17 C 0.153 3.847 18 N -0.607 5.607 19 C -0.259 4.259 20 H 0.088 0.912 21 C 0.019 3.981 22 N -0.911 5.911 23 Si 0.886 3.114 24 H -0.290 1.290 25 H -0.304 1.304 26 H -0.268 1.268 27 C 0.128 3.872 28 C -0.142 4.142 29 H 0.075 0.925 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.122 0.878 39 H 0.068 0.932 40 H 0.409 0.591 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.067 0.933 46 H 0.263 0.737 47 H 0.032 0.968 48 H 0.077 0.923 49 H 0.062 0.938 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.331 14.138 24.204 28.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 H 0.100 0.900 4 C -0.211 4.211 5 C -0.012 4.012 6 O -0.304 6.304 7 C -0.029 4.029 8 C -0.063 4.063 9 N -0.311 5.311 10 C 0.293 3.707 11 O -0.389 6.389 12 C 0.283 3.717 13 O -0.398 6.398 14 N -0.340 5.340 15 C 0.046 3.954 16 C -0.182 4.182 17 C 0.026 3.974 18 N -0.331 5.331 19 C -0.387 4.387 20 H 0.106 0.894 21 C -0.179 4.179 22 N -0.554 5.554 23 Si 0.717 3.283 24 H -0.218 1.218 25 H -0.233 1.233 26 H -0.193 1.193 27 C 0.002 3.998 28 C -0.182 4.182 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.084 0.916 38 H 0.139 0.861 39 H 0.086 0.914 40 H 0.245 0.755 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.050 0.950 48 H 0.094 0.906 49 H 0.080 0.920 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.448 13.793 24.120 28.524 hybrid contribution -0.191 -0.595 0.483 0.790 sum 6.257 13.198 24.603 28.612 Atomic orbital electron populations 1.22208 0.91772 1.03613 1.02066 1.20884 0.96554 0.94938 0.82958 0.89978 1.21675 0.98055 1.03012 0.98341 1.22005 0.93258 0.88829 0.97090 1.87689 1.87269 1.31012 1.24396 1.23794 0.96601 1.01171 0.81296 1.22216 0.80229 0.98916 1.04895 1.47942 1.07409 1.49479 1.26228 1.20332 0.86492 0.80395 0.83450 1.90800 1.15053 1.62025 1.71011 1.20150 0.86936 0.81380 0.83255 1.90635 1.14719 1.60722 1.73746 1.46169 1.10705 1.49107 1.27987 1.21177 0.98071 0.91378 0.84780 1.22409 1.01565 0.98322 0.95901 1.20868 0.91352 0.89692 0.95450 1.44411 1.50351 1.33449 1.04843 1.18959 1.37063 0.95283 0.87413 0.89412 1.25234 0.98896 0.97430 0.96364 1.69809 1.35060 1.23731 1.26823 0.86954 0.79285 0.83560 0.78496 1.21805 1.23292 1.19274 1.21362 0.97641 0.92872 0.87957 1.22382 0.98624 0.97767 0.99464 0.90641 0.93153 0.90787 0.90151 0.90160 0.89664 0.92668 0.87906 0.91567 0.86076 0.91362 0.75494 0.89384 0.91565 0.92163 0.95561 0.91435 0.92750 0.95043 0.90557 0.91968 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.61 37.15 0.28 -0.97 16 2 C 0.15 1.19 3.18 -68.94 -0.22 0.97 16 3 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 4 C -0.17 -1.29 4.65 -29.81 -0.14 -1.42 16 5 C 0.07 0.48 6.46 36.99 0.24 0.72 16 6 O -0.39 -4.04 10.19 -32.15 -0.33 -4.36 16 7 C 0.05 0.46 7.09 37.90 0.27 0.73 16 8 C 0.06 0.55 4.44 -4.76 -0.02 0.53 16 9 N -0.58 -5.85 2.71 -168.47 -0.46 -6.31 16 10 C 0.51 6.31 7.67 -11.59 -0.09 6.22 16 11 O -0.51 -6.89 12.03 5.50 0.07 -6.83 16 12 C 0.50 6.69 7.67 -11.59 -0.09 6.60 16 13 O -0.52 -7.39 11.63 5.50 0.06 -7.32 16 14 N -0.69 -9.20 5.07 -54.19 -0.27 -9.47 16 15 C 0.15 2.29 2.42 -67.88 -0.16 2.13 16 16 C -0.14 -2.29 5.65 -26.61 -0.15 -2.44 16 17 C 0.15 2.93 6.52 -3.71 -0.02 2.91 16 18 N -0.61 -14.01 2.82 -172.32 -0.49 -14.50 16 19 C -0.26 -7.11 10.09 -15.06 -0.15 -7.26 16 20 H 0.09 2.57 8.04 -52.49 -0.42 2.15 16 21 C 0.02 0.55 5.30 -17.43 -0.09 0.46 16 22 N -0.91 -27.73 13.97 55.49 0.78 -26.96 16 23 Si 0.89 22.11 24.28 -169.99 -4.13 17.98 16 24 H -0.29 -6.97 6.69 56.52 0.38 -6.59 16 25 H -0.30 -7.79 7.11 56.52 0.40 -7.39 16 26 H -0.27 -6.49 6.16 56.52 0.35 -6.14 16 27 C 0.13 2.69 4.15 -3.71 -0.02 2.68 16 28 C -0.14 -2.38 5.55 -26.61 -0.15 -2.52 16 29 H 0.07 0.82 6.73 -51.93 -0.35 0.47 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.78 6.82 -51.93 -0.35 0.42 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.33 6.34 -51.93 -0.33 0.00 16 36 H 0.10 1.18 6.88 -51.93 -0.36 0.82 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.12 1.25 5.37 -51.93 -0.28 0.97 16 39 H 0.07 0.46 7.06 -51.93 -0.37 0.09 16 40 H 0.41 5.06 8.08 -40.82 -0.33 4.73 16 41 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 42 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.29 7.92 -51.93 -0.41 0.88 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.03 0.66 6.88 -51.93 -0.36 0.30 16 48 H 0.08 1.76 4.05 -51.93 -0.21 1.55 16 49 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 50 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -31.48 370.47 -7.71 -39.18 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.01 Total: 3.70 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: -0.51 Total: 9.31 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.44 Total: -57.24 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.20 Total: -18.52 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.98 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.48 -7.71 -39.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334516852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.968 kcal (2) G-P(sol) polarization free energy of solvation -31.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds