Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09006 * 109.92354 * 2 1 4 4 C 1.46924 * 109.87353 * 121.02831 * 2 1 3 5 5 C 1.52680 * 113.62507 * 177.43763 * 4 2 1 6 6 O 1.39715 * 106.08892 * 271.71896 * 5 4 2 7 7 C 1.44957 * 115.12826 * 98.22191 * 6 5 4 8 8 C 1.54413 * 110.76569 * 320.85149 * 7 6 5 9 9 N 1.43751 * 115.49158 * 318.57656 * 8 7 6 10 10 C 1.34781 * 120.42721 * 267.77215 * 9 8 7 11 11 O 1.21348 * 119.99526 * 185.42776 * 10 9 8 12 12 C 1.49442 * 120.00254 * 5.41922 * 10 9 8 13 13 O 1.21350 * 119.99977 * 4.70137 * 12 10 9 14 14 N 1.34774 * 120.00106 * 184.69290 * 12 10 9 15 15 C 1.46509 * 120.00157 * 180.02562 * 14 12 10 16 16 C 1.53038 * 109.45849 * 275.02862 * 15 14 12 17 17 C 1.53192 * 109.31278 * 178.59542 * 16 15 14 18 18 N 1.46931 * 108.76162 * 54.66224 * 17 16 15 19 19 C 1.36932 * 120.63674 * 126.40188 * 18 17 16 20 20 H 1.07999 * 119.99599 * 335.24962 * 19 18 17 21 21 C 1.38812 * 120.00185 * 155.24383 * 19 18 17 22 22 N 1.31621 * 119.99992 * 161.40673 * 21 19 18 23 23 Si 1.86798 * 119.99938 * 341.40302 * 21 19 18 24 24 H 1.48499 * 109.47192 * 95.01531 * 23 21 19 25 25 H 1.48505 * 109.47194 * 215.01130 * 23 21 19 26 26 H 1.48507 * 109.47302 * 335.01355 * 23 21 19 27 27 C 1.46931 * 118.73261 * 306.38134 * 18 17 16 28 28 C 1.53041 * 109.46036 * 154.97415 * 15 14 12 29 29 H 1.08993 * 109.47732 * 186.60652 * 1 2 3 30 30 H 1.09007 * 109.47200 * 306.60586 * 1 2 3 31 31 H 1.09005 * 109.47217 * 66.60079 * 1 2 3 32 32 H 1.09000 * 108.65723 * 298.50940 * 4 2 1 33 33 H 1.09005 * 108.65431 * 56.37173 * 4 2 1 34 34 H 1.08990 * 110.12612 * 152.57078 * 5 4 2 35 35 H 1.09003 * 110.12127 * 30.85608 * 5 4 2 36 36 H 1.09000 * 109.22261 * 200.51559 * 7 6 5 37 37 H 1.08998 * 109.21428 * 81.17718 * 7 6 5 38 38 H 1.09001 * 108.27854 * 197.01620 * 8 7 6 39 39 H 1.09000 * 108.13189 * 80.02680 * 8 7 6 40 40 H 0.97001 * 120.00184 * 0.02562 * 14 12 10 41 41 H 1.08999 * 109.45444 * 35.00275 * 15 14 12 42 42 H 1.08994 * 109.50134 * 298.56590 * 16 15 14 43 43 H 1.09011 * 109.49645 * 58.66323 * 16 15 14 44 44 H 1.08996 * 109.60104 * 294.87126 * 17 16 15 45 45 H 1.09000 * 109.70101 * 174.50539 * 17 16 15 46 46 H 0.97003 * 119.99965 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.58793 * 293.82038 * 27 18 17 48 48 H 1.09003 * 109.69905 * 173.46781 * 27 18 17 49 49 H 1.09001 * 109.49776 * 301.33764 * 28 15 14 50 50 H 1.08998 * 109.49356 * 61.43552 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9014 1.0248 0.0000 4 6 2.0294 -0.7122 1.1840 5 6 3.5516 -0.8176 1.2378 6 8 3.8838 -1.9834 0.5432 7 6 4.2982 -1.7839 -0.8315 8 6 3.4451 -0.6883 -1.5070 9 7 2.0395 -0.7265 -1.2081 10 6 1.1907 -1.4066 -2.0042 11 8 -0.0047 -1.3533 -1.8023 12 6 1.7217 -2.2262 -3.1354 13 8 2.9196 -2.3485 -3.2861 14 7 0.8702 -2.8295 -3.9883 15 6 1.3907 -3.6333 -5.0970 16 6 1.7041 -2.7210 -6.2851 17 6 2.2808 -3.5599 -7.4298 18 7 1.3433 -4.6489 -7.7365 19 6 0.8874 -4.8382 -9.0137 20 1 0.8686 -4.0115 -9.7084 21 6 0.4497 -6.0926 -9.4157 22 7 -0.3134 -6.2131 -10.4813 23 14 0.9437 -7.6098 -8.4443 24 1 -0.1242 -7.9414 -7.4671 25 1 1.1360 -8.7518 -9.3738 26 1 2.2121 -7.3423 -7.7196 27 6 0.9047 -5.5312 -6.6466 28 6 0.3437 -4.6702 -5.5105 29 1 -0.3634 -1.0207 0.1182 30 1 -0.3634 0.6128 0.8250 31 1 -0.3634 0.4081 -0.9432 32 1 1.6844 -0.1900 2.0764 33 1 1.6100 -1.7184 1.1884 34 1 3.8862 -0.8894 2.2726 35 1 4.0047 0.0484 0.7552 36 1 4.1822 -2.7184 -1.3805 37 1 5.3462 -1.4851 -0.8505 38 1 3.5676 -0.7765 -2.5865 39 1 3.8338 0.2824 -1.1989 40 1 -0.0874 -2.7315 -3.8680 41 1 2.3008 -4.1426 -4.7802 42 1 0.7896 -2.2303 -6.6182 43 1 2.4323 -1.9680 -5.9834 44 1 3.2411 -3.9783 -7.1286 45 1 2.4154 -2.9343 -8.3122 46 1 -0.6196 -7.0897 -10.7619 47 1 1.7528 -6.1104 -6.2815 48 1 0.1301 -6.2067 -7.0098 49 1 0.1036 -5.3049 -4.6574 50 1 -0.5578 -4.1610 -5.8510 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334516852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -77.108946 kcal Electronic energy + Delta-G solvation = -31404.476976 eV Core-core repulsion = 27240.056590 eV Total energy + Delta-G solvation = -4164.420386 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.33072 -40.67744 -39.51957 -39.07884 -36.88885 -36.13314 -34.71667 -34.03896 -32.05618 -31.88209 -30.22843 -29.84777 -27.36340 -25.78151 -25.22413 -24.60783 -23.73656 -22.86617 -22.14380 -21.36173 -20.58323 -19.03912 -18.60106 -18.00351 -17.86682 -17.49460 -17.07338 -16.72437 -16.40757 -16.28402 -16.02497 -15.96525 -15.52918 -15.39846 -15.23386 -14.72740 -14.62148 -14.35984 -14.22701 -14.08232 -13.89401 -13.61631 -13.53300 -13.42197 -13.05658 -12.82699 -12.64582 -12.59191 -12.36306 -12.27685 -12.23288 -12.00832 -11.77865 -11.73633 -11.54461 -11.47118 -11.33292 -10.77920 -10.53882 -10.21594 -10.05975 -9.77856 -9.00770 -8.14671 -5.47390 0.33156 1.20308 1.29751 1.43139 1.50940 2.09511 2.32812 2.41346 2.97307 3.06040 3.24857 3.34354 3.69094 3.70712 3.82977 3.84943 3.90864 4.09828 4.14738 4.16112 4.28348 4.36262 4.44175 4.44637 4.52782 4.58703 4.60712 4.62734 4.74803 4.78119 4.85664 4.87599 4.89705 4.95421 4.97085 5.04900 5.12516 5.13424 5.18167 5.29351 5.32570 5.39500 5.52959 5.84194 5.92419 6.12283 6.22663 6.43147 6.67608 6.89206 6.93117 7.61059 7.99484 9.04935 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024138 B = 0.002585 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.705590 B =10830.371481 C =11137.240569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.144 3.856 3 H 0.113 0.887 4 C -0.167 4.167 5 C 0.061 3.939 6 O -0.410 6.410 7 C 0.051 3.949 8 C 0.060 3.940 9 N -0.572 5.572 10 C 0.507 3.493 11 O -0.530 6.530 12 C 0.501 3.499 13 O -0.528 6.528 14 N -0.685 5.685 15 C 0.160 3.840 16 C -0.129 4.129 17 C 0.149 3.851 18 N -0.621 5.621 19 C -0.246 4.246 20 H 0.055 0.945 21 C -0.041 4.041 22 N -0.961 5.961 23 Si 0.949 3.051 24 H -0.275 1.275 25 H -0.316 1.316 26 H -0.255 1.255 27 C 0.121 3.879 28 C -0.132 4.132 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.415 0.585 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.060 0.940 46 H 0.261 0.739 47 H 0.040 0.960 48 H 0.056 0.944 49 H 0.087 0.913 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 15.587 27.657 32.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.045 3.955 3 H 0.131 0.869 4 C -0.205 4.205 5 C -0.016 4.016 6 O -0.329 6.329 7 C -0.026 4.026 8 C -0.064 4.064 9 N -0.305 5.305 10 C 0.289 3.711 11 O -0.408 6.408 12 C 0.282 3.718 13 O -0.406 6.406 14 N -0.337 5.337 15 C 0.056 3.944 16 C -0.169 4.169 17 C 0.024 3.976 18 N -0.345 5.345 19 C -0.375 4.375 20 H 0.073 0.927 21 C -0.235 4.235 22 N -0.607 5.607 23 Si 0.779 3.221 24 H -0.202 1.202 25 H -0.245 1.245 26 H -0.179 1.179 27 C -0.005 4.005 28 C -0.172 4.172 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.125 0.875 33 H 0.069 0.931 34 H 0.119 0.881 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.105 0.895 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.252 0.748 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.056 0.944 45 H 0.079 0.921 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.106 0.894 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.789 15.283 27.648 32.537 hybrid contribution -0.552 -0.906 -0.534 1.188 sum 7.238 14.377 27.114 31.532 Atomic orbital electron populations 1.22088 0.92564 1.02378 1.02062 1.21145 0.95973 0.96255 0.82155 0.86946 1.21617 0.98282 1.01545 0.99083 1.22235 0.92992 0.88575 0.97830 1.87667 1.87520 1.32994 1.24722 1.23737 0.97825 1.00079 0.80983 1.22270 0.79559 1.00375 1.04147 1.48122 1.07720 1.48487 1.26190 1.20175 0.86554 0.80744 0.83590 1.90811 1.15629 1.62813 1.71499 1.20420 0.86755 0.81241 0.83394 1.90644 1.15081 1.60918 1.73993 1.45962 1.11077 1.49079 1.27565 1.20876 0.97491 0.91021 0.84987 1.22229 1.01436 0.98124 0.95082 1.21012 0.91250 0.88930 0.96428 1.44525 1.51442 1.34684 1.03870 1.18902 1.35509 0.94240 0.88874 0.92689 1.25877 0.99406 1.00394 0.97804 1.69947 1.37241 1.24165 1.29390 0.85917 0.79704 0.79283 0.77191 1.20208 1.24507 1.17879 1.21412 0.97405 0.93164 0.88476 1.22204 0.98445 0.97848 0.98682 0.93091 0.90717 0.92534 0.87518 0.93070 0.88145 0.90655 0.90558 0.89496 0.87393 0.88188 0.74811 0.89700 0.92228 0.90629 0.94439 0.92131 0.93011 0.94179 0.92649 0.89420 0.91222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.61 71.98 0.55 -1.60 16 2 C 0.14 1.91 3.18 42.44 0.13 2.04 16 3 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.17 -2.01 4.65 28.60 0.13 -1.88 16 5 C 0.06 0.68 6.46 71.88 0.46 1.15 16 6 O -0.41 -7.75 10.19 -137.96 -1.41 -9.16 16 7 C 0.05 0.86 7.09 72.46 0.51 1.38 16 8 C 0.06 0.93 4.44 87.37 0.39 1.31 16 9 N -0.57 -10.39 2.71 -805.29 -2.18 -12.57 16 10 C 0.51 11.90 7.67 87.27 0.67 12.57 16 11 O -0.53 -13.86 12.03 -3.24 -0.04 -13.90 16 12 C 0.50 12.65 7.67 87.27 0.67 13.32 16 13 O -0.53 -14.23 11.63 -3.25 -0.04 -14.27 16 14 N -0.69 -17.22 5.07 -443.73 -2.25 -19.47 16 15 C 0.16 4.62 2.42 45.02 0.11 4.73 16 16 C -0.13 -3.98 5.65 30.67 0.17 -3.81 16 17 C 0.15 5.60 6.52 86.36 0.56 6.17 16 18 N -0.62 -28.47 2.82 -699.09 -1.97 -30.44 16 19 C -0.25 -13.79 10.09 84.03 0.85 -12.95 16 20 H 0.06 3.37 8.04 -2.91 -0.02 3.35 16 21 C -0.04 -2.37 5.30 84.86 0.45 -1.92 16 22 N -0.96 -60.47 13.97 21.65 0.30 -60.17 16 23 Si 0.95 46.19 24.28 68.60 1.67 47.86 16 24 H -0.28 -12.58 6.69 99.48 0.67 -11.91 16 25 H -0.32 -15.80 7.11 99.48 0.71 -15.09 16 26 H -0.25 -11.67 6.16 99.48 0.61 -11.06 16 27 C 0.12 4.91 4.15 86.36 0.36 5.26 16 28 C -0.13 -4.16 5.55 30.67 0.17 -3.99 16 29 H 0.05 1.07 6.73 -2.39 -0.02 1.06 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.06 1.11 6.82 -2.38 -0.02 1.10 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.94 7.90 -2.38 -0.02 0.92 16 34 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.55 6.34 -2.39 -0.02 0.53 16 36 H 0.08 1.69 6.88 -2.39 -0.02 1.68 16 37 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.11 2.01 5.37 -2.39 -0.01 2.00 16 39 H 0.10 0.92 7.06 -2.39 -0.02 0.91 16 40 H 0.42 9.66 8.08 -92.71 -0.75 8.91 16 41 H 0.08 2.58 7.58 -2.39 -0.02 2.56 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.33 16 45 H 0.06 2.32 7.92 -2.39 -0.02 2.30 16 46 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 47 H 0.04 1.57 6.88 -2.39 -0.02 1.56 16 48 H 0.06 2.49 4.05 -2.39 -0.01 2.48 16 49 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.34 370.47 0.35 -70.00 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.07 Total: 20.34 kcal Atomic # 6 Polarization: 15.60 SS G_CDS: 6.19 Total: 21.79 kcal Atomic # 7 Polarization: -116.55 SS G_CDS: -6.10 Total: -122.65 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.48 Total: -37.33 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 1.67 Total: 47.86 kcal Total: -70.34 0.35 -70.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334516852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.113 kcal (2) G-P(sol) polarization free energy of solvation -70.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds