Wall clock time and date at job start Sat Apr 11 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.44896 * 2 1 4 4 C 1.53035 * 109.46063 * 240.02981 * 2 1 3 5 5 C 1.53123 * 109.27602 * 180.80506 * 4 2 1 6 6 H 1.09000 * 109.52298 * 297.68244 * 5 4 2 7 7 N 1.46500 * 109.51999 * 177.55865 * 5 4 2 8 8 C 1.34776 * 119.99977 * 154.99916 * 7 5 4 9 9 O 1.21355 * 119.99727 * 0.02562 * 8 7 5 10 10 C 1.49450 * 120.00369 * 179.97438 * 8 7 5 11 11 O 1.21353 * 119.99541 * 359.97438 * 10 8 7 12 12 N 1.34773 * 119.99992 * 180.02562 * 10 8 7 13 13 C 1.47423 * 125.65151 * 359.97387 * 12 10 8 14 14 C 1.54914 * 104.92845 * 155.83879 * 13 12 10 15 15 C 1.55445 * 101.45210 * 37.00685 * 14 13 12 16 16 O 1.42900 * 110.70731 * 82.88612 * 15 14 13 17 17 C 1.50697 * 110.85662 * 206.07568 * 15 14 13 18 18 H 1.07995 * 120.00629 * 351.74498 * 17 15 14 19 19 C 1.37888 * 119.99466 * 171.74999 * 17 15 14 20 20 N 1.31504 * 120.00137 * 5.94416 * 19 17 15 21 21 Si 1.86801 * 119.99564 * 185.94106 * 19 17 15 22 22 H 1.48503 * 109.46942 * 94.98912 * 21 19 17 23 23 H 1.48496 * 109.46939 * 214.98537 * 21 19 17 24 24 H 1.48497 * 109.47405 * 334.98834 * 21 19 17 25 25 C 1.47021 * 125.64753 * 180.02562 * 12 10 8 26 26 C 1.53117 * 109.15955 * 57.65084 * 5 4 2 27 27 C 1.53032 * 109.27987 * 302.34490 * 26 5 4 28 28 N 1.46845 * 109.52365 * 59.18356 * 27 26 5 29 29 C 1.46901 * 111.00150 * 174.16011 * 28 27 26 30 30 H 1.09005 * 109.46868 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47240 * 299.97484 * 1 2 3 32 32 H 1.08997 * 109.46880 * 59.96998 * 1 2 3 33 33 H 1.08993 * 109.50646 * 60.86257 * 4 2 1 34 34 H 1.09004 * 109.50491 * 300.74158 * 4 2 1 35 35 H 0.96997 * 120.00543 * 334.99182 * 7 5 4 36 36 H 1.08999 * 110.36998 * 274.73504 * 13 12 10 37 37 H 1.09003 * 110.36674 * 36.94593 * 13 12 10 38 38 H 1.08994 * 111.00287 * 155.14190 * 14 13 12 39 39 H 1.09001 * 111.00071 * 278.99208 * 14 13 12 40 40 H 0.96696 * 113.99857 * 185.00094 * 16 15 14 41 41 H 0.96997 * 120.00477 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.88226 * 300.45736 * 25 12 10 43 43 H 1.09000 * 109.88537 * 61.61817 * 25 12 10 44 44 H 1.08999 * 109.50287 * 62.29076 * 26 5 4 45 45 H 1.09006 * 109.49730 * 182.40329 * 26 5 4 46 46 H 1.08997 * 109.46242 * 299.16451 * 27 26 5 47 47 H 1.09005 * 109.45428 * 179.19098 * 27 26 5 48 48 H 1.08998 * 109.46870 * 184.20952 * 29 28 27 49 49 H 1.09005 * 109.47034 * 304.21022 * 29 28 27 50 50 H 1.08997 * 109.46821 * 64.20628 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5710 -0.7360 -1.2356 6 1 3.9457 0.2871 -1.2684 7 7 4.0642 -1.4755 -2.4001 8 6 5.2936 -1.2198 -2.8896 9 8 5.9923 -0.3773 -2.3653 10 6 5.7970 -1.9746 -4.0772 11 8 5.0989 -2.8180 -4.6005 12 7 7.0267 -1.7192 -4.5663 13 6 7.9755 -0.7264 -4.0302 14 6 9.3715 -1.2251 -4.4799 15 6 9.0571 -1.7886 -5.8941 16 8 9.0500 -0.7405 -6.8654 17 6 10.0449 -2.8606 -6.2763 18 1 10.9102 -3.0435 -5.6565 19 6 9.8440 -3.6078 -7.4176 20 7 8.8571 -3.3092 -8.2338 21 14 10.9739 -5.0442 -7.8043 22 1 10.3659 -6.3018 -7.3003 23 1 11.1658 -5.1414 -9.2736 24 1 12.2881 -4.8314 -7.1465 25 6 7.6436 -2.3839 -5.7235 26 6 4.0548 -1.4187 0.0467 27 6 3.4865 -0.6776 1.2590 28 7 2.0193 -0.6917 1.1994 29 6 1.4373 -0.1106 2.4165 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6895 -0.1981 -2.1399 34 1 1.6660 -1.7447 -1.2577 35 1 3.5060 -2.1492 -2.8189 36 1 7.7713 0.2587 -4.4497 37 1 7.9165 -0.6942 -2.9422 38 1 10.0820 -0.4004 -4.5347 39 1 9.7374 -2.0106 -3.8186 40 1 8.7842 -1.0261 -7.7502 41 1 8.7155 -3.8350 -9.0365 42 1 7.7127 -3.4564 -5.5416 43 1 7.0512 -2.1951 -6.6187 44 1 3.7125 -2.4535 0.0594 45 1 5.1440 -1.3946 0.0831 46 1 3.8404 0.3533 1.2531 47 1 3.8175 -1.1700 2.1735 48 1 0.3518 -0.2012 2.3792 49 1 1.8165 -0.6414 3.2898 50 1 1.7120 0.9421 2.4837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349214692.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:17 Heat of formation + Delta-G solvation = -132.715037 kcal Electronic energy + Delta-G solvation = -30557.009674 eV Core-core repulsion = 26390.178027 eV Total energy + Delta-G solvation = -4166.831647 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95278 -40.65398 -39.65242 -38.90147 -36.67436 -35.89795 -34.26906 -33.41478 -32.78185 -31.88493 -29.75657 -28.46151 -27.73208 -27.01486 -25.40200 -24.02110 -23.53855 -22.00449 -21.58498 -21.32701 -20.48611 -19.11684 -18.77513 -18.04591 -17.40002 -17.08731 -17.01069 -16.60530 -16.43236 -16.26563 -15.75989 -15.73011 -15.30221 -15.03927 -14.83299 -14.77589 -14.56508 -14.37729 -14.03723 -13.66284 -13.55492 -13.43340 -13.16354 -12.99875 -12.89586 -12.83741 -12.68449 -12.65524 -12.53131 -12.37396 -12.27490 -12.11746 -12.08435 -11.92072 -11.80596 -11.49071 -11.19211 -10.76572 -10.51338 -10.32189 -10.29130 -9.76502 -9.28852 -8.28494 -6.43149 0.30590 1.22380 1.41691 1.44205 1.53809 2.08571 2.35888 2.47118 2.91916 2.98440 3.25911 3.61531 3.76215 3.76835 3.90867 4.02710 4.06039 4.13581 4.27668 4.31169 4.35523 4.43714 4.46881 4.52751 4.59322 4.65992 4.70868 4.76903 4.85054 4.89343 4.93686 4.94963 4.99464 5.06122 5.06315 5.08860 5.12913 5.18995 5.29000 5.30938 5.39757 5.44657 5.71273 5.96302 6.05967 6.11437 6.14480 6.34924 6.59822 6.66431 6.89296 7.25247 7.35311 8.78205 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027072 B = 0.002229 C = 0.002199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.027604 B =12561.123140 C =12728.971764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.040 0.960 4 C -0.114 4.114 5 C 0.144 3.856 6 H 0.078 0.922 7 N -0.684 5.684 8 C 0.521 3.479 9 O -0.528 6.528 10 C 0.501 3.499 11 O -0.560 6.560 12 N -0.584 5.584 13 C 0.109 3.891 14 C -0.114 4.114 15 C 0.233 3.767 16 O -0.588 6.588 17 C -0.557 4.557 18 H 0.068 0.932 19 C 0.028 3.972 20 N -0.913 5.913 21 Si 0.963 3.037 22 H -0.278 1.278 23 H -0.281 1.281 24 H -0.266 1.266 25 C 0.118 3.882 26 C -0.124 4.124 27 C 0.064 3.936 28 N -0.548 5.548 29 C 0.021 3.979 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.417 0.583 36 H 0.068 0.932 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.376 0.624 41 H 0.271 0.729 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.687 6.436 19.046 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.040 3.960 6 H 0.096 0.904 7 N -0.336 5.336 8 C 0.302 3.698 9 O -0.405 6.405 10 C 0.284 3.716 11 O -0.440 6.440 12 N -0.316 5.316 13 C -0.012 4.012 14 C -0.152 4.152 15 C 0.193 3.807 16 O -0.396 6.396 17 C -0.595 4.595 18 H 0.086 0.914 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.788 3.212 22 H -0.204 1.204 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.004 4.004 26 C -0.163 4.163 27 C -0.065 4.065 28 N -0.273 5.273 29 C -0.127 4.127 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.052 0.948 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.092 0.908 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.671 6.422 19.501 25.828 hybrid contribution 0.493 -0.742 -1.464 1.714 sum -15.178 5.680 18.036 24.248 Atomic orbital electron populations 1.21886 0.92497 1.02951 1.02761 1.21576 0.96689 0.94954 0.89192 0.94183 1.21916 0.91659 1.03158 0.98476 1.21270 0.95330 0.95725 0.83659 0.90382 1.45818 1.15109 1.41185 1.31491 1.19733 0.83327 0.83047 0.83721 1.90686 1.56125 1.33279 1.60387 1.20285 0.81521 0.84215 0.85535 1.90704 1.56535 1.35169 1.61638 1.48728 1.14207 1.38152 1.30528 1.22634 0.87474 0.90796 1.00342 1.22869 0.95905 1.01431 0.95021 1.19793 0.88971 0.85217 0.86731 1.86120 1.91713 1.38779 1.22966 1.21778 1.09770 1.18330 1.09631 0.91428 1.25801 0.96596 0.99548 0.95429 1.69785 1.31547 1.40814 1.13004 0.85462 0.79254 0.79085 0.77378 1.20403 1.20700 1.19033 1.22723 0.96133 0.95999 0.85560 1.21937 1.00209 1.00708 0.93406 1.21987 0.87324 0.98826 0.98324 1.62000 1.06885 1.55489 1.02932 1.22471 1.01246 0.97285 0.91665 0.91727 0.91396 0.91267 0.89831 0.89691 0.74523 0.91369 0.87732 0.89086 0.89581 0.77439 0.91956 0.93515 0.93747 0.90583 0.92105 0.94820 0.89322 0.89896 0.90830 0.95551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.77 71.98 0.63 -0.79 16 2 C 0.08 1.12 2.44 44.94 0.11 1.23 16 3 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 4 C -0.11 -1.67 4.85 30.65 0.15 -1.53 16 5 C 0.14 2.83 2.52 45.07 0.11 2.94 16 6 H 0.08 1.75 7.58 -2.39 -0.02 1.73 16 7 N -0.68 -16.75 5.07 -443.48 -2.25 -19.00 16 8 C 0.52 16.81 7.83 87.27 0.68 17.50 16 9 O -0.53 -17.97 13.44 -3.26 -0.04 -18.01 16 10 C 0.50 19.96 7.91 87.27 0.69 20.65 16 11 O -0.56 -24.59 16.80 -3.26 -0.05 -24.64 16 12 N -0.58 -24.89 3.33 -813.35 -2.71 -27.60 16 13 C 0.11 4.13 6.05 86.86 0.53 4.66 16 14 C -0.11 -4.62 6.26 32.09 0.20 -4.42 16 15 C 0.23 11.40 0.85 -10.25 -0.01 11.39 16 16 O -0.59 -29.94 13.08 -148.98 -1.95 -31.89 16 17 C -0.56 -29.14 8.15 25.60 0.21 -28.93 16 18 H 0.07 3.46 7.80 -2.91 -0.02 3.44 16 19 C 0.03 1.44 5.22 84.66 0.44 1.88 16 20 N -0.91 -48.93 11.01 21.45 0.24 -48.69 16 21 Si 0.96 41.74 29.54 68.60 2.03 43.77 16 22 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 24 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 25 C 0.12 5.84 5.19 86.73 0.45 6.29 16 26 C -0.12 -2.31 5.67 30.64 0.17 -2.14 16 27 C 0.06 0.97 5.46 86.32 0.47 1.45 16 28 N -0.55 -7.64 4.75 -897.18 -4.26 -11.90 16 29 C 0.02 0.22 9.05 127.69 1.16 1.37 16 30 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.56 6.32 -2.39 -0.02 0.55 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.42 9.49 8.08 -92.71 -0.75 8.74 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.10 3.62 6.15 -2.39 -0.01 3.61 16 38 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 39 H 0.09 3.30 8.05 -2.39 -0.02 3.28 16 40 H 0.38 19.74 7.51 -74.06 -0.56 19.18 16 41 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 42 H 0.05 2.50 7.79 -2.38 -0.02 2.48 16 43 H 0.04 2.39 7.91 -2.39 -0.02 2.37 16 44 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.09 1.19 8.09 -2.38 -0.02 1.17 16 48 H 0.08 0.71 6.21 -2.39 -0.01 0.69 16 49 H 0.07 0.69 8.09 -2.38 -0.02 0.67 16 50 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -61.51 392.01 -3.35 -64.86 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -0.35 Total: 41.54 kcal Atomic # 6 Polarization: 25.56 SS G_CDS: 6.00 Total: 31.55 kcal Atomic # 7 Polarization: -98.20 SS G_CDS: -8.98 Total: -107.18 kcal Atomic # 8 Polarization: -72.50 SS G_CDS: -2.05 Total: -74.54 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -61.51 -3.35 -64.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214692.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.855 kcal (2) G-P(sol) polarization free energy of solvation -61.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds