Wall clock time and date at job start Sat Apr 11 2020 05:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.45479 * 2 1 4 4 C 1.53034 * 109.45956 * 240.02478 * 2 1 3 5 5 C 1.53126 * 109.27454 * 180.80847 * 4 2 1 6 6 H 1.09000 * 109.52072 * 297.68377 * 5 4 2 7 7 N 1.46506 * 109.51992 * 177.55812 * 5 4 2 8 8 C 1.34774 * 119.99571 * 154.99787 * 7 5 4 9 9 O 1.21346 * 120.00315 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99786 * 179.97438 * 8 7 5 11 11 O 1.21346 * 119.99899 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99786 * 180.02562 * 10 8 7 13 13 C 1.47014 * 125.65008 * 359.69685 * 12 10 8 14 14 C 1.54340 * 107.26854 * 178.84747 * 13 12 10 15 15 C 1.55155 * 103.01791 * 338.14052 * 14 13 12 16 16 O 1.42896 * 111.00528 * 277.23133 * 15 14 13 17 17 C 1.50701 * 111.03997 * 153.39052 * 15 14 13 18 18 H 1.07998 * 119.99427 * 6.33802 * 17 15 14 19 19 C 1.37879 * 120.00200 * 186.32977 * 17 15 14 20 20 N 1.31513 * 119.99779 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99988 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47296 * 59.99493 * 21 19 17 23 23 H 1.48500 * 109.47046 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46607 * 299.99803 * 21 19 17 25 25 C 1.47433 * 125.64497 * 180.02562 * 12 10 8 26 26 C 1.53119 * 109.16048 * 57.65518 * 5 4 2 27 27 C 1.53033 * 109.27787 * 302.34386 * 26 5 4 28 28 N 1.46845 * 109.45802 * 119.97198 * 2 1 3 29 29 C 1.46898 * 111.00565 * 305.85195 * 28 2 1 30 30 H 1.08994 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47101 * 299.97752 * 1 2 3 32 32 H 1.09002 * 109.46873 * 59.97101 * 1 2 3 33 33 H 1.08997 * 109.50792 * 60.86953 * 4 2 1 34 34 H 1.09006 * 109.50471 * 300.74607 * 4 2 1 35 35 H 0.96997 * 120.00016 * 335.00042 * 7 5 4 36 36 H 1.09003 * 109.88337 * 298.38719 * 13 12 10 37 37 H 1.09000 * 109.88568 * 59.56148 * 13 12 10 38 38 H 1.08993 * 110.85464 * 219.67364 * 14 13 12 39 39 H 1.09001 * 110.51446 * 96.44619 * 14 13 12 40 40 H 0.96701 * 114.00447 * 173.64688 * 16 15 14 41 41 H 0.97006 * 119.99397 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.36605 * 322.93234 * 25 12 10 43 43 H 1.08996 * 110.36212 * 85.14602 * 25 12 10 44 44 H 1.09004 * 109.50440 * 62.28501 * 26 5 4 45 45 H 1.09003 * 109.50154 * 182.40625 * 26 5 4 46 46 H 1.09005 * 109.46370 * 179.19662 * 27 26 5 47 47 H 1.08998 * 109.46299 * 299.16556 * 27 26 5 48 48 H 1.09001 * 109.46914 * 299.75251 * 29 28 2 49 49 H 1.09004 * 109.46860 * 59.74648 * 29 28 2 50 50 H 1.08995 * 109.47689 * 179.74327 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7361 -1.2355 6 1 3.9457 0.2869 -1.2683 7 7 4.0642 -1.4758 -2.4000 8 6 5.2936 -1.2201 -2.8894 9 8 5.9919 -0.3771 -2.3658 10 6 5.7970 -1.9751 -4.0769 11 8 5.0986 -2.8179 -4.6008 12 7 7.0267 -1.7198 -4.5660 13 6 7.9706 -0.7257 -4.0349 14 6 9.2521 -0.8076 -4.8912 15 6 9.1709 -2.2295 -5.5067 16 8 9.6610 -3.2122 -4.5924 17 6 9.9144 -2.2955 -6.8159 18 1 10.4954 -1.4488 -7.1502 19 6 9.8529 -3.4370 -7.5868 20 7 9.1450 -4.4680 -7.1799 21 14 10.7751 -3.5191 -9.2093 22 1 12.2273 -3.3300 -8.9634 23 1 10.5478 -4.8435 -9.8414 24 1 10.2826 -2.4488 -10.1132 25 6 7.6453 -2.3865 -5.7264 26 6 4.0547 -1.4189 0.0468 27 6 3.4864 -0.6778 1.2591 28 7 2.0192 -0.6917 1.1994 29 6 1.4373 -0.1105 2.4166 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6896 -0.1982 -2.1399 34 1 1.6658 -1.7448 -1.2576 35 1 3.5059 -2.1494 -2.8187 36 1 7.5377 0.2721 -4.1068 37 1 8.2061 -0.9560 -2.9959 38 1 10.1415 -0.7069 -4.2692 39 1 9.2386 -0.0478 -5.6726 40 1 9.5410 -4.1235 -4.8928 41 1 9.1021 -5.2712 -7.7221 42 1 7.3717 -3.4413 -5.7481 43 1 7.3410 -1.8972 -6.6516 44 1 3.7123 -2.4537 0.0596 45 1 5.1439 -1.3948 0.0833 46 1 3.8174 -1.1700 2.1737 47 1 3.8403 0.3532 1.2532 48 1 1.7157 0.9411 2.4860 49 1 0.3514 -0.1970 2.3772 50 1 1.8128 -0.6443 3.2896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349214694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:22 Heat of formation + Delta-G solvation = -111.461602 kcal Electronic energy + Delta-G solvation = -30590.472776 eV Core-core repulsion = 26424.562747 eV Total energy + Delta-G solvation = -4165.910029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.57926 -39.56721 -38.29431 -37.16389 -35.47990 -34.19639 -32.77926 -32.25307 -31.83102 -30.21633 -27.94909 -27.65642 -26.63810 -25.68627 -23.94741 -23.13421 -22.19723 -20.95514 -20.40400 -19.72073 -19.28184 -17.37075 -17.11685 -16.61627 -16.13075 -15.88937 -15.63253 -15.39040 -15.16511 -14.90696 -14.68290 -14.43277 -14.11340 -14.02612 -13.62315 -13.10691 -13.03118 -12.92445 -12.79368 -12.52703 -12.39653 -12.28118 -12.21529 -12.05085 -11.67482 -11.52826 -11.41172 -11.30821 -11.08126 -11.04170 -11.02702 -10.79941 -10.73508 -10.57301 -10.50207 -10.21664 -9.37958 -9.20603 -9.10881 -8.70570 -8.66944 -8.41054 -7.90024 -6.29876 -4.39490 1.81271 2.64116 3.21573 3.27291 3.29263 3.51880 3.61553 3.88064 4.25469 4.34907 4.51272 4.55522 4.71624 4.78722 4.91483 4.97673 5.06823 5.07753 5.13921 5.19341 5.23200 5.37483 5.43898 5.47089 5.49338 5.56597 5.64572 5.73564 5.79591 5.80691 5.83280 5.89340 6.04337 6.06419 6.25655 6.37730 6.51816 6.71119 6.72830 6.74877 6.80323 6.84841 7.17115 7.26541 7.32708 7.71863 7.89447 8.00728 8.06832 8.46102 8.64427 9.27819 9.36337 10.77293 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.002215 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.796622 B =12636.334325 C =12962.684258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.085 3.915 3 H 0.043 0.957 4 C -0.120 4.120 5 C 0.145 3.855 6 H 0.087 0.913 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.518 6.518 10 C 0.507 3.493 11 O -0.538 6.538 12 N -0.574 5.574 13 C 0.112 3.888 14 C -0.122 4.122 15 C 0.249 3.751 16 O -0.581 6.581 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.092 3.908 26 C -0.129 4.129 27 C 0.060 3.940 28 N -0.540 5.540 29 C 0.021 3.979 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.381 0.619 41 H 0.271 0.729 42 H 0.091 0.909 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.036 0.964 48 H 0.024 0.976 49 H 0.073 0.927 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.411 8.395 14.887 23.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.024 4.024 3 H 0.061 0.939 4 C -0.158 4.158 5 C 0.040 3.960 6 H 0.105 0.895 7 N -0.357 5.357 8 C 0.293 3.707 9 O -0.392 6.392 10 C 0.289 3.711 11 O -0.417 6.417 12 N -0.306 5.306 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.208 3.792 16 O -0.389 6.389 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C -0.029 4.029 26 C -0.168 4.168 27 C -0.068 4.068 28 N -0.265 5.265 29 C -0.127 4.127 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.248 0.752 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.231 0.769 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.098 0.902 47 H 0.054 0.946 48 H 0.043 0.957 49 H 0.091 0.909 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.371 8.417 15.266 23.242 hybrid contribution 0.285 -0.088 -1.338 1.371 sum -15.086 8.329 13.928 22.158 Atomic orbital electron populations 1.21918 0.93867 1.02851 1.01913 1.21544 0.95649 0.95397 0.89773 0.93864 1.21932 0.93751 1.02614 0.97514 1.21062 0.93709 0.96612 0.84607 0.89477 1.45806 1.16669 1.41693 1.31486 1.20434 0.82167 0.83334 0.84748 1.90717 1.55752 1.32744 1.60035 1.19587 0.82287 0.84416 0.84823 1.90723 1.56088 1.34120 1.60788 1.48667 1.13172 1.37675 1.31107 1.22139 0.89628 0.90973 0.98341 1.22715 0.95812 0.98594 0.98844 1.19633 0.87314 0.84555 0.87675 1.86130 1.84681 1.19556 1.48573 1.21422 1.31205 1.01080 1.03824 0.91441 1.25092 0.94428 0.95327 0.98425 1.69704 1.39662 1.04714 1.39130 0.86440 0.80255 0.77376 0.82712 1.19969 1.21092 1.20015 1.23494 0.95857 0.98625 0.84914 1.22010 1.01158 1.00578 0.93033 1.22045 0.86761 0.99162 0.98879 1.61976 1.07369 1.55020 1.02138 1.22420 1.00709 0.97227 0.92300 0.91517 0.92280 0.91970 0.90544 0.90064 0.75216 0.91797 0.91197 0.90524 0.90392 0.76950 0.91904 0.89096 0.91451 0.90522 0.90557 0.90236 0.94575 0.95719 0.90863 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 8.77 37.16 0.33 -0.60 16 2 C 0.09 0.66 2.44 -67.72 -0.17 0.50 16 3 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 4 C -0.12 -1.01 4.85 -26.65 -0.13 -1.14 16 5 C 0.14 1.56 2.52 -67.80 -0.17 1.39 16 6 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 7 N -0.70 -9.21 5.07 -54.11 -0.27 -9.48 16 8 C 0.51 8.63 7.83 -11.58 -0.09 8.54 16 9 O -0.52 -9.32 13.79 5.50 0.08 -9.25 16 10 C 0.51 10.21 7.91 -11.58 -0.09 10.12 16 11 O -0.54 -11.79 16.73 5.50 0.09 -11.70 16 12 N -0.57 -12.21 3.33 -171.00 -0.57 -12.78 16 13 C 0.11 2.17 5.49 -3.06 -0.02 2.15 16 14 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16 15 C 0.25 6.01 0.87 -89.61 -0.08 5.94 16 16 O -0.58 -14.79 13.16 -35.23 -0.46 -15.25 16 17 C -0.54 -13.83 8.27 -34.44 -0.28 -14.12 16 18 H 0.07 1.70 7.79 -52.49 -0.41 1.29 16 19 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 20 N -0.89 -23.51 10.69 55.43 0.59 -22.92 16 21 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 25 C 0.09 2.19 5.38 -2.51 -0.01 2.17 16 26 C -0.13 -1.34 5.67 -26.65 -0.15 -1.49 16 27 C 0.06 0.53 5.46 -3.83 -0.02 0.50 16 28 N -0.54 -4.45 4.75 -234.93 -1.11 -5.56 16 29 C 0.02 0.14 9.06 60.06 0.54 0.68 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.33 6.32 -51.93 -0.33 0.00 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.41 5.03 8.08 -40.82 -0.33 4.70 16 36 H 0.06 1.14 7.71 -51.93 -0.40 0.74 16 37 H 0.07 1.37 7.57 -51.93 -0.39 0.98 16 38 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 40 H 0.38 9.86 7.57 45.56 0.34 10.20 16 41 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 42 H 0.09 2.39 7.33 -51.93 -0.38 2.01 16 43 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.08 0.64 8.09 -51.93 -0.42 0.22 16 47 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 49 H 0.07 0.42 6.20 -51.93 -0.32 0.09 16 50 H 0.07 0.41 8.10 -51.93 -0.42 -0.01 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -28.85 392.42 -9.01 -37.85 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: -7.65 Total: 14.30 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -0.59 Total: 13.73 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: -1.37 Total: -50.74 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -0.30 Total: -36.20 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -28.85 -9.01 -37.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.608 kcal (2) G-P(sol) polarization free energy of solvation -28.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds