Wall clock time and date at job start Sat Apr 11 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.45479 * 2 1 4 4 C 1.53034 * 109.45956 * 240.02478 * 2 1 3 5 5 C 1.53126 * 109.27454 * 180.80847 * 4 2 1 6 6 H 1.09000 * 109.52072 * 297.68377 * 5 4 2 7 7 N 1.46506 * 109.51992 * 177.55812 * 5 4 2 8 8 C 1.34774 * 119.99571 * 154.99787 * 7 5 4 9 9 O 1.21346 * 120.00315 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99786 * 179.97438 * 8 7 5 11 11 O 1.21346 * 119.99899 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99786 * 180.02562 * 10 8 7 13 13 C 1.47014 * 125.65008 * 359.69685 * 12 10 8 14 14 C 1.54340 * 107.26854 * 178.84747 * 13 12 10 15 15 C 1.55155 * 103.01791 * 338.14052 * 14 13 12 16 16 O 1.42896 * 111.00528 * 277.23133 * 15 14 13 17 17 C 1.50701 * 111.03997 * 153.39052 * 15 14 13 18 18 H 1.07998 * 119.99427 * 6.33802 * 17 15 14 19 19 C 1.37879 * 120.00200 * 186.32977 * 17 15 14 20 20 N 1.31513 * 119.99779 * 0.02562 * 19 17 15 21 21 Si 1.86803 * 119.99988 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47296 * 59.99493 * 21 19 17 23 23 H 1.48500 * 109.47046 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46607 * 299.99803 * 21 19 17 25 25 C 1.47433 * 125.64497 * 180.02562 * 12 10 8 26 26 C 1.53119 * 109.16048 * 57.65518 * 5 4 2 27 27 C 1.53033 * 109.27787 * 302.34386 * 26 5 4 28 28 N 1.46845 * 109.45802 * 119.97198 * 2 1 3 29 29 C 1.46898 * 111.00565 * 305.85195 * 28 2 1 30 30 H 1.08994 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47101 * 299.97752 * 1 2 3 32 32 H 1.09002 * 109.46873 * 59.97101 * 1 2 3 33 33 H 1.08997 * 109.50792 * 60.86953 * 4 2 1 34 34 H 1.09006 * 109.50471 * 300.74607 * 4 2 1 35 35 H 0.96997 * 120.00016 * 335.00042 * 7 5 4 36 36 H 1.09003 * 109.88337 * 298.38719 * 13 12 10 37 37 H 1.09000 * 109.88568 * 59.56148 * 13 12 10 38 38 H 1.08993 * 110.85464 * 219.67364 * 14 13 12 39 39 H 1.09001 * 110.51446 * 96.44619 * 14 13 12 40 40 H 0.96701 * 114.00447 * 173.64688 * 16 15 14 41 41 H 0.97006 * 119.99397 * 180.02562 * 20 19 17 42 42 H 1.08994 * 110.36605 * 322.93234 * 25 12 10 43 43 H 1.08996 * 110.36212 * 85.14602 * 25 12 10 44 44 H 1.09004 * 109.50440 * 62.28501 * 26 5 4 45 45 H 1.09003 * 109.50154 * 182.40625 * 26 5 4 46 46 H 1.09005 * 109.46370 * 179.19662 * 27 26 5 47 47 H 1.08998 * 109.46299 * 299.16556 * 27 26 5 48 48 H 1.09001 * 109.46914 * 299.75251 * 29 28 2 49 49 H 1.09004 * 109.46860 * 59.74648 * 29 28 2 50 50 H 1.08995 * 109.47689 * 179.74327 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7361 -1.2355 6 1 3.9457 0.2869 -1.2683 7 7 4.0642 -1.4758 -2.4000 8 6 5.2936 -1.2201 -2.8894 9 8 5.9919 -0.3771 -2.3658 10 6 5.7970 -1.9751 -4.0769 11 8 5.0986 -2.8179 -4.6008 12 7 7.0267 -1.7198 -4.5660 13 6 7.9706 -0.7257 -4.0349 14 6 9.2521 -0.8076 -4.8912 15 6 9.1709 -2.2295 -5.5067 16 8 9.6610 -3.2122 -4.5924 17 6 9.9144 -2.2955 -6.8159 18 1 10.4954 -1.4488 -7.1502 19 6 9.8529 -3.4370 -7.5868 20 7 9.1450 -4.4680 -7.1799 21 14 10.7751 -3.5191 -9.2093 22 1 12.2273 -3.3300 -8.9634 23 1 10.5478 -4.8435 -9.8414 24 1 10.2826 -2.4488 -10.1132 25 6 7.6453 -2.3865 -5.7264 26 6 4.0547 -1.4189 0.0468 27 6 3.4864 -0.6778 1.2591 28 7 2.0192 -0.6917 1.1994 29 6 1.4373 -0.1105 2.4166 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3633 0.5143 -0.8897 33 1 1.6896 -0.1982 -2.1399 34 1 1.6658 -1.7448 -1.2576 35 1 3.5059 -2.1494 -2.8187 36 1 7.5377 0.2721 -4.1068 37 1 8.2061 -0.9560 -2.9959 38 1 10.1415 -0.7069 -4.2692 39 1 9.2386 -0.0478 -5.6726 40 1 9.5410 -4.1235 -4.8928 41 1 9.1021 -5.2712 -7.7221 42 1 7.3717 -3.4413 -5.7481 43 1 7.3410 -1.8972 -6.6516 44 1 3.7123 -2.4537 0.0596 45 1 5.1439 -1.3948 0.0833 46 1 3.8174 -1.1700 2.1737 47 1 3.8403 0.3532 1.2532 48 1 1.7157 0.9411 2.4860 49 1 0.3514 -0.1970 2.3772 50 1 1.8128 -0.6443 3.2896 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349214694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:21 Heat of formation + Delta-G solvation = -133.710284 kcal Electronic energy + Delta-G solvation = -30591.437551 eV Core-core repulsion = 26424.562747 eV Total energy + Delta-G solvation = -4166.874804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.92570 -40.64843 -39.64464 -38.86362 -36.64787 -35.89137 -34.24598 -33.41895 -32.77970 -31.95824 -29.71793 -28.45903 -27.72407 -27.01418 -25.41045 -24.00639 -23.50462 -21.96763 -21.58411 -21.32898 -20.45903 -19.15616 -18.74975 -18.01834 -17.25638 -17.08596 -17.05952 -16.59427 -16.40208 -16.28371 -15.88680 -15.69683 -15.25075 -15.08850 -14.89574 -14.67510 -14.60228 -14.32380 -13.97178 -13.67174 -13.52493 -13.33075 -13.16419 -13.00513 -12.84268 -12.82143 -12.69830 -12.65982 -12.53846 -12.36194 -12.27074 -12.12777 -12.11715 -11.92579 -11.81232 -11.49458 -11.21854 -10.74498 -10.56993 -10.34152 -10.29818 -9.65425 -9.29070 -8.25244 -6.42182 0.32826 1.24857 1.45255 1.46144 1.53865 2.10741 2.37046 2.49148 2.91515 3.00631 3.27975 3.61462 3.75718 3.76386 3.90773 4.04788 4.05386 4.14120 4.27428 4.31226 4.33168 4.43460 4.46336 4.52439 4.64809 4.66623 4.72724 4.76474 4.84362 4.89108 4.94751 4.96693 4.98934 5.04902 5.05963 5.10119 5.14226 5.18549 5.29323 5.33121 5.39900 5.42814 5.73965 5.97589 6.06348 6.10880 6.14600 6.36543 6.61348 6.67590 6.91331 7.26164 7.34450 8.80225 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.031042 B = 0.002215 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.796622 B =12636.334325 C =12962.684258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.085 3.915 3 H 0.041 0.959 4 C -0.113 4.113 5 C 0.144 3.856 6 H 0.078 0.922 7 N -0.685 5.685 8 C 0.519 3.481 9 O -0.529 6.529 10 C 0.501 3.499 11 O -0.561 6.561 12 N -0.583 5.583 13 C 0.120 3.880 14 C -0.116 4.116 15 C 0.233 3.767 16 O -0.588 6.588 17 C -0.556 4.556 18 H 0.070 0.930 19 C 0.027 3.973 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.271 1.271 23 H -0.285 1.285 24 H -0.269 1.269 25 C 0.106 3.894 26 C -0.125 4.125 27 C 0.065 3.935 28 N -0.548 5.548 29 C 0.021 3.979 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.417 0.583 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.374 0.626 41 H 0.270 0.730 42 H 0.058 0.942 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.034 0.966 48 H 0.026 0.974 49 H 0.083 0.917 50 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.466 9.696 15.642 24.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 H 0.059 0.941 4 C -0.151 4.151 5 C 0.041 3.959 6 H 0.097 0.903 7 N -0.337 5.337 8 C 0.300 3.700 9 O -0.406 6.406 10 C 0.284 3.716 11 O -0.441 6.441 12 N -0.315 5.315 13 C -0.002 4.002 14 C -0.153 4.153 15 C 0.193 3.807 16 O -0.395 6.395 17 C -0.594 4.594 18 H 0.088 0.912 19 C -0.174 4.174 20 N -0.553 5.553 21 Si 0.791 3.209 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.194 1.194 25 C -0.016 4.016 26 C -0.164 4.164 27 C -0.064 4.064 28 N -0.273 5.273 29 C -0.127 4.127 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.254 0.746 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.223 0.777 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.052 0.948 48 H 0.045 0.955 49 H 0.102 0.898 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.460 9.737 16.057 24.971 hybrid contribution 0.554 -0.517 -1.525 1.703 sum -15.905 9.220 14.531 23.434 Atomic orbital electron populations 1.21884 0.92436 1.02950 1.02799 1.21581 0.96723 0.94965 0.89146 0.94117 1.21916 0.91546 1.03149 0.98537 1.21261 0.95390 0.95689 0.83589 0.90337 1.45813 1.15160 1.41235 1.31515 1.19787 0.83263 0.83111 0.83881 1.90713 1.56375 1.33307 1.60180 1.20264 0.81680 0.84184 0.85454 1.90700 1.56612 1.35121 1.61685 1.48708 1.13965 1.38058 1.30722 1.22154 0.88868 0.91392 0.97797 1.22727 0.96765 0.96450 0.99383 1.19864 0.87147 0.86025 0.87675 1.86123 1.84905 1.19442 1.49055 1.21720 1.31590 1.01372 1.04685 0.91184 1.25822 0.95109 0.95066 1.01379 1.69818 1.40448 1.05005 1.40059 0.85492 0.79058 0.77291 0.79095 1.19630 1.21085 1.19414 1.23066 0.96160 0.96755 0.85624 1.21940 1.00060 1.00722 0.93638 1.21976 0.87384 0.98798 0.98230 1.61994 1.06809 1.55544 1.02997 1.22472 1.01260 0.97293 0.91635 0.91761 0.91380 0.91182 0.89670 0.89763 0.74552 0.89737 0.91297 0.89645 0.88914 0.77711 0.92029 0.92312 0.92553 0.90693 0.92406 0.89420 0.94780 0.95514 0.89831 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.77 71.98 0.63 -0.79 16 2 C 0.08 1.14 2.44 44.94 0.11 1.25 16 3 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 4 C -0.11 -1.70 4.85 30.65 0.15 -1.55 16 5 C 0.14 2.94 2.52 45.07 0.11 3.05 16 6 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 7 N -0.68 -17.33 5.07 -443.47 -2.25 -19.58 16 8 C 0.52 17.22 7.83 87.27 0.68 17.91 16 9 O -0.53 -18.59 13.79 -3.23 -0.04 -18.63 16 10 C 0.50 20.27 7.91 87.27 0.69 20.96 16 11 O -0.56 -24.94 16.73 -3.23 -0.05 -25.00 16 12 N -0.58 -24.91 3.33 -813.30 -2.70 -27.61 16 13 C 0.12 4.54 5.49 86.74 0.48 5.02 16 14 C -0.12 -4.61 6.13 31.79 0.19 -4.42 16 15 C 0.23 11.36 0.87 -10.14 -0.01 11.35 16 16 O -0.59 -30.44 13.16 -148.98 -1.96 -32.40 16 17 C -0.56 -28.68 8.27 25.60 0.21 -28.47 16 18 H 0.07 3.49 7.79 -2.91 -0.02 3.47 16 19 C 0.03 1.42 5.29 84.66 0.45 1.86 16 20 N -0.91 -49.05 10.69 21.45 0.23 -48.82 16 21 Si 0.97 41.28 29.54 68.60 2.03 43.30 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 C 0.11 5.17 5.38 86.86 0.47 5.63 16 26 C -0.12 -2.49 5.67 30.65 0.17 -2.32 16 27 C 0.06 1.04 5.46 86.32 0.47 1.51 16 28 N -0.55 -7.94 4.75 -897.18 -4.26 -12.20 16 29 C 0.02 0.23 9.06 127.69 1.16 1.38 16 30 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.57 6.32 -2.39 -0.02 0.55 16 32 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 35 H 0.42 9.81 8.08 -92.71 -0.75 9.06 16 36 H 0.08 2.87 7.71 -2.39 -0.02 2.85 16 37 H 0.07 2.63 7.57 -2.39 -0.02 2.62 16 38 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 39 H 0.09 3.40 8.03 -2.39 -0.02 3.38 16 40 H 0.37 20.03 7.57 -74.06 -0.56 19.47 16 41 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 42 H 0.06 3.22 7.33 -2.39 -0.02 3.20 16 43 H 0.06 2.81 8.03 -2.39 -0.02 2.79 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.09 1.27 8.09 -2.38 -0.02 1.25 16 47 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 49 H 0.08 0.73 6.20 -2.39 -0.01 0.72 16 50 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 Total: -1.00 -61.63 392.42 -3.40 -65.03 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -0.35 Total: 43.52 kcal Atomic # 6 Polarization: 26.42 SS G_CDS: 5.97 Total: 32.39 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -8.98 Total: -108.21 kcal Atomic # 8 Polarization: -73.97 SS G_CDS: -2.06 Total: -76.03 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -61.63 -3.40 -65.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.681 kcal (2) G-P(sol) polarization free energy of solvation -61.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds