Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46927 * 2 1 4 4 C 1.53039 * 109.46065 * 240.01851 * 2 1 3 5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1 6 6 H 1.08994 * 109.52349 * 177.58253 * 5 4 2 7 7 N 1.46504 * 109.52167 * 297.77141 * 5 4 2 8 8 C 1.34774 * 119.99784 * 204.99901 * 7 5 4 9 9 O 1.21346 * 120.00397 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99787 * 180.02562 * 8 7 5 11 11 O 1.21345 * 119.99831 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99787 * 179.97438 * 10 8 7 13 13 C 1.47423 * 125.65198 * 0.02562 * 12 10 8 14 14 C 1.54908 * 104.83418 * 204.09104 * 13 12 10 15 15 C 1.55156 * 101.58308 * 322.99407 * 14 13 12 16 16 O 1.42900 * 110.71686 * 276.95983 * 15 14 13 17 17 C 1.50699 * 110.72130 * 153.86576 * 15 14 13 18 18 H 1.08001 * 120.00058 * 359.97438 * 17 15 14 19 19 C 1.37874 * 119.99860 * 179.97438 * 17 15 14 20 20 N 1.31522 * 120.00129 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00106 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46937 * 59.99790 * 21 19 17 23 23 H 1.48501 * 109.47431 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47067 * 299.99867 * 21 19 17 25 25 C 1.47020 * 125.64821 * 179.71885 * 12 10 8 26 26 C 1.53203 * 109.11533 * 57.63615 * 5 4 2 27 27 C 1.53030 * 109.30370 * 302.37368 * 26 5 4 28 28 N 1.46846 * 109.52435 * 59.17688 * 27 26 5 29 29 C 1.46902 * 111.00121 * 174.16395 * 28 27 26 30 30 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46858 * 299.98030 * 1 2 3 32 32 H 1.08994 * 109.47405 * 59.97623 * 1 2 3 33 33 H 1.09002 * 109.50563 * 300.74995 * 4 2 1 34 34 H 1.09003 * 109.50107 * 60.82976 * 4 2 1 35 35 H 0.97002 * 119.99874 * 24.99938 * 7 5 4 36 36 H 1.09003 * 110.36572 * 322.93012 * 13 12 10 37 37 H 1.09001 * 110.36440 * 85.25321 * 13 12 10 38 38 H 1.08999 * 111.00064 * 81.06668 * 14 13 12 39 39 H 1.08998 * 111.00546 * 204.87645 * 14 13 12 40 40 H 0.96691 * 114.00303 * 180.02562 * 16 15 14 41 41 H 0.96996 * 120.00114 * 180.02562 * 20 19 17 42 42 H 1.09011 * 109.88240 * 298.39657 * 25 12 10 43 43 H 1.09008 * 109.88449 * 59.55438 * 25 12 10 44 44 H 1.08997 * 109.49417 * 182.41991 * 26 5 4 45 45 H 1.09007 * 109.52297 * 62.34418 * 26 5 4 46 46 H 1.09004 * 109.46094 * 299.16423 * 27 26 5 47 47 H 1.08997 * 109.46013 * 179.19203 * 27 26 5 48 48 H 1.09000 * 109.47170 * 184.20873 * 29 28 27 49 49 H 1.09003 * 109.47055 * 304.21119 * 29 28 27 50 50 H 1.09002 * 109.46954 * 64.21044 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 -1.2499 5 6 3.5709 -0.7363 -1.2366 6 1 3.9372 -1.2864 -2.1032 7 7 4.0745 0.6388 -1.2792 8 6 5.3037 0.8913 -1.7711 9 8 5.9933 -0.0204 -2.1782 10 6 5.8177 2.2940 -1.8141 11 8 5.1285 3.2054 -1.4056 12 7 7.0470 2.5464 -2.3055 13 6 7.9856 1.5387 -2.8317 14 6 9.3861 2.1827 -2.6780 15 6 9.0827 3.6693 -3.0023 16 8 9.0743 3.8870 -4.4146 17 6 10.0816 4.5762 -2.3309 18 1 10.8693 4.1559 -1.7233 19 6 9.9898 5.9423 -2.4923 20 7 9.0307 6.4541 -3.2327 21 14 11.2275 7.0665 -1.6595 22 1 12.5942 6.7396 -2.1393 23 1 10.9119 8.4800 -1.9880 24 1 11.1599 6.8738 -0.1886 25 6 7.6716 3.8731 -2.4115 26 6 4.0547 -1.4189 0.0468 27 6 3.4864 -0.6778 1.2591 28 7 2.0193 -0.6918 1.1995 29 6 1.4373 -0.1104 2.4166 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5136 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6657 -1.7449 -1.2575 34 1 1.6888 -0.1988 -2.1399 35 1 3.5234 1.3675 -0.9534 36 1 7.9238 0.6209 -2.2469 37 1 7.7747 1.3355 -3.8816 38 1 9.7567 2.0729 -1.6588 39 1 10.0906 1.7616 -3.3951 40 1 8.8897 4.8010 -4.6706 41 1 8.9663 7.4152 -3.3466 42 1 7.0803 4.5097 -3.0697 43 1 7.7475 4.3271 -1.4233 44 1 5.1438 -1.3949 0.0833 45 1 3.7130 -2.4539 0.0600 46 1 3.8403 0.3532 1.2531 47 1 3.8174 -1.1700 2.1736 48 1 0.3517 -0.2010 2.3793 49 1 1.8164 -0.6412 3.2899 50 1 1.7120 0.9423 2.4836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349214696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -108.342333 kcal Electronic energy + Delta-G solvation = -31055.373421 eV Core-core repulsion = 26889.598654 eV Total energy + Delta-G solvation = -4165.774767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77155 -39.59344 -38.22162 -37.22677 -35.35337 -34.25875 -32.74982 -32.20017 -31.74453 -30.16860 -28.00273 -27.69193 -26.63626 -25.81520 -23.99097 -23.17557 -22.20962 -21.50300 -20.01585 -19.48041 -19.24487 -17.38467 -17.23459 -16.50085 -16.17067 -15.84927 -15.73802 -15.53645 -15.24106 -14.83127 -14.68852 -14.46989 -14.07322 -13.89401 -13.46528 -13.04579 -13.01033 -12.89378 -12.81564 -12.70389 -12.36319 -12.32950 -12.21231 -12.03120 -11.81423 -11.63384 -11.54409 -11.32762 -11.09611 -11.05929 -10.95406 -10.79194 -10.59043 -10.53898 -10.49183 -10.18304 -9.37334 -9.25998 -9.12615 -8.68453 -8.59987 -8.36623 -8.04127 -6.33198 -4.41855 1.76080 2.61787 3.20364 3.25792 3.27993 3.56033 3.57296 3.87368 4.23855 4.35534 4.43190 4.60944 4.66904 4.82973 4.92844 4.94963 5.01782 5.11665 5.20207 5.24812 5.35295 5.39966 5.49462 5.50646 5.55360 5.61886 5.66296 5.75673 5.78828 5.82750 5.87783 5.88169 5.97070 6.03788 6.21096 6.38901 6.49735 6.74197 6.75500 6.78080 6.79317 6.81674 7.15839 7.21058 7.31473 7.69494 7.84764 7.98690 8.01207 8.40812 8.61614 9.27263 9.40765 10.74592 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002567 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.028926 B =10905.749300 C =11350.441339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.042 0.958 4 C -0.119 4.119 5 C 0.142 3.858 6 H 0.095 0.905 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.505 3.495 11 O -0.541 6.541 12 N -0.574 5.574 13 C 0.099 3.901 14 C -0.121 4.121 15 C 0.249 3.751 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.897 5.897 21 Si 0.906 3.094 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.098 3.902 26 C -0.127 4.127 27 C 0.054 3.946 28 N -0.537 5.537 29 C 0.020 3.980 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.408 0.592 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.386 0.614 41 H 0.272 0.728 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.067 0.933 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 -14.022 6.708 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 H 0.060 0.940 4 C -0.157 4.157 5 C 0.037 3.963 6 H 0.113 0.887 7 N -0.358 5.358 8 C 0.294 3.706 9 O -0.391 6.391 10 C 0.287 3.713 11 O -0.420 6.420 12 N -0.306 5.306 13 C -0.023 4.023 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.395 6.395 17 C -0.575 4.575 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.733 3.267 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.023 4.023 26 C -0.166 4.166 27 C -0.074 4.074 28 N -0.262 5.262 29 C -0.128 4.128 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.108 0.892 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.238 0.762 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.101 0.899 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.912 -15.149 6.534 22.239 hybrid contribution 0.434 2.588 0.709 2.718 sum -14.479 -12.561 7.244 20.491 Atomic orbital electron populations 1.21911 0.93924 1.02664 1.02018 1.21653 0.95746 0.95503 0.90355 0.94022 1.21949 0.93620 1.02775 0.97325 1.21116 0.93692 0.82219 0.99244 0.88670 1.45939 1.16725 1.10023 1.63120 1.20404 0.82236 0.89919 0.78045 1.90693 1.55979 1.46533 1.45863 1.19621 0.82211 0.88668 0.80834 1.90716 1.56654 1.46133 1.48495 1.48686 1.13445 1.11977 1.56464 1.22642 0.88863 0.91509 0.99279 1.22829 0.94799 0.96657 1.01630 1.19487 0.89030 0.90707 0.79969 1.86092 1.94495 1.35314 1.23551 1.21500 1.13502 0.91142 1.31366 0.91408 1.25090 0.95432 0.98300 0.94496 1.69563 1.31795 1.13467 1.38818 0.86422 0.81287 0.79141 0.79849 1.19915 1.21049 1.20018 1.23275 0.96205 0.80704 1.02136 1.21992 1.01078 1.00036 0.93451 1.22090 0.86877 0.99492 0.98954 1.62003 1.07297 1.54809 1.02072 1.22433 1.00635 0.97460 0.92277 0.91618 0.92294 0.91971 0.89192 0.90503 0.75532 0.89493 0.91359 0.90551 0.90267 0.76217 0.91797 0.91225 0.91027 0.90629 0.89909 0.94507 0.90546 0.90883 0.91445 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.77 37.15 0.33 -0.68 16 2 C 0.08 0.63 2.28 -67.72 -0.15 0.48 16 3 H 0.04 0.40 6.64 -51.93 -0.34 0.06 16 4 C -0.12 -0.96 5.03 -26.65 -0.13 -1.09 16 5 C 0.14 1.45 2.81 -67.76 -0.19 1.26 16 6 H 0.10 1.05 7.58 -51.93 -0.39 0.66 16 7 N -0.70 -9.02 4.34 -54.07 -0.23 -9.25 16 8 C 0.51 8.43 7.83 -11.58 -0.09 8.34 16 9 O -0.52 -8.98 13.44 5.50 0.07 -8.91 16 10 C 0.50 10.03 7.91 -11.58 -0.09 9.94 16 11 O -0.54 -11.73 16.80 5.50 0.09 -11.64 16 12 N -0.57 -12.13 3.33 -171.02 -0.57 -12.70 16 13 C 0.10 1.92 6.05 -2.53 -0.02 1.91 16 14 C -0.12 -2.49 6.23 -24.58 -0.15 -2.64 16 15 C 0.25 6.03 0.86 -89.94 -0.08 5.95 16 16 O -0.58 -14.81 13.08 -35.23 -0.46 -15.28 16 17 C -0.54 -13.91 8.11 -34.44 -0.28 -14.19 16 18 H 0.07 1.72 7.76 -52.49 -0.41 1.31 16 19 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 20 N -0.90 -23.56 10.97 55.43 0.61 -22.95 16 21 Si 0.91 20.24 29.54 -169.99 -5.02 15.21 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.10 2.35 5.54 -3.06 -0.02 2.33 16 26 C -0.13 -1.23 5.77 -26.61 -0.15 -1.39 16 27 C 0.05 0.51 5.32 -3.84 -0.02 0.49 16 28 N -0.54 -4.68 4.75 -234.92 -1.12 -5.79 16 29 C 0.02 0.15 9.05 60.07 0.54 0.70 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.41 5.13 6.48 -40.82 -0.26 4.86 16 36 H 0.09 1.57 6.16 -51.93 -0.32 1.25 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.39 10.01 6.98 45.56 0.32 10.33 16 41 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 42 H 0.07 1.80 8.07 -51.92 -0.42 1.38 16 43 H 0.07 1.83 7.81 -51.92 -0.41 1.43 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.04 0.41 7.69 -51.93 -0.40 0.01 16 47 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 48 H 0.07 0.48 6.21 -51.93 -0.32 0.16 16 49 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 50 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 387.90 15.07 5.85 5.85 Total: -1.00 -28.50 387.90 -8.87 -37.36 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: -7.48 Total: 14.98 kcal Atomic # 6 Polarization: 13.71 SS G_CDS: -0.60 Total: 13.11 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -1.31 Total: -50.69 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -0.29 Total: -35.83 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.50 -8.87 -37.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.978 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds