Wall clock time and date at job start Sat Apr 11 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.46927 * 2 1 4 4 C 1.53039 * 109.46065 * 240.01851 * 2 1 3 5 5 C 1.53123 * 109.31189 * 180.78663 * 4 2 1 6 6 H 1.08994 * 109.52349 * 177.58253 * 5 4 2 7 7 N 1.46504 * 109.52167 * 297.77141 * 5 4 2 8 8 C 1.34774 * 119.99784 * 204.99901 * 7 5 4 9 9 O 1.21346 * 120.00397 * 359.97438 * 8 7 5 10 10 C 1.49455 * 119.99787 * 180.02562 * 8 7 5 11 11 O 1.21345 * 119.99831 * 0.02562 * 10 8 7 12 12 N 1.34774 * 119.99787 * 179.97438 * 10 8 7 13 13 C 1.47423 * 125.65198 * 0.02562 * 12 10 8 14 14 C 1.54908 * 104.83418 * 204.09104 * 13 12 10 15 15 C 1.55156 * 101.58308 * 322.99407 * 14 13 12 16 16 O 1.42900 * 110.71686 * 276.95983 * 15 14 13 17 17 C 1.50699 * 110.72130 * 153.86576 * 15 14 13 18 18 H 1.08001 * 120.00058 * 359.97438 * 17 15 14 19 19 C 1.37874 * 119.99860 * 179.97438 * 17 15 14 20 20 N 1.31522 * 120.00129 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 120.00106 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.46937 * 59.99790 * 21 19 17 23 23 H 1.48501 * 109.47431 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47067 * 299.99867 * 21 19 17 25 25 C 1.47020 * 125.64821 * 179.71885 * 12 10 8 26 26 C 1.53203 * 109.11533 * 57.63615 * 5 4 2 27 27 C 1.53030 * 109.30370 * 302.37368 * 26 5 4 28 28 N 1.46846 * 109.52435 * 59.17688 * 27 26 5 29 29 C 1.46902 * 111.00121 * 174.16395 * 28 27 26 30 30 H 1.09000 * 109.47236 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46858 * 299.98030 * 1 2 3 32 32 H 1.08994 * 109.47405 * 59.97623 * 1 2 3 33 33 H 1.09002 * 109.50563 * 300.74995 * 4 2 1 34 34 H 1.09003 * 109.50107 * 60.82976 * 4 2 1 35 35 H 0.97002 * 119.99874 * 24.99938 * 7 5 4 36 36 H 1.09003 * 110.36572 * 322.93012 * 13 12 10 37 37 H 1.09001 * 110.36440 * 85.25321 * 13 12 10 38 38 H 1.08999 * 111.00064 * 81.06668 * 14 13 12 39 39 H 1.08998 * 111.00546 * 204.87645 * 14 13 12 40 40 H 0.96691 * 114.00303 * 180.02562 * 16 15 14 41 41 H 0.96996 * 120.00114 * 180.02562 * 20 19 17 42 42 H 1.09011 * 109.88240 * 298.39657 * 25 12 10 43 43 H 1.09008 * 109.88449 * 59.55438 * 25 12 10 44 44 H 1.08997 * 109.49417 * 182.41991 * 26 5 4 45 45 H 1.09007 * 109.52297 * 62.34418 * 26 5 4 46 46 H 1.09004 * 109.46094 * 299.16423 * 27 26 5 47 47 H 1.08997 * 109.46013 * 179.19203 * 27 26 5 48 48 H 1.09000 * 109.47170 * 184.20873 * 29 28 27 49 49 H 1.09003 * 109.47055 * 304.21119 * 29 28 27 50 50 H 1.09002 * 109.46954 * 64.21044 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7211 -1.2499 5 6 3.5709 -0.7363 -1.2366 6 1 3.9372 -1.2864 -2.1032 7 7 4.0745 0.6388 -1.2792 8 6 5.3037 0.8913 -1.7711 9 8 5.9933 -0.0204 -2.1782 10 6 5.8177 2.2940 -1.8141 11 8 5.1285 3.2054 -1.4056 12 7 7.0470 2.5464 -2.3055 13 6 7.9856 1.5387 -2.8317 14 6 9.3861 2.1827 -2.6780 15 6 9.0827 3.6693 -3.0023 16 8 9.0743 3.8870 -4.4146 17 6 10.0816 4.5762 -2.3309 18 1 10.8693 4.1559 -1.7233 19 6 9.9898 5.9423 -2.4923 20 7 9.0307 6.4541 -3.2327 21 14 11.2275 7.0665 -1.6595 22 1 12.5942 6.7396 -2.1393 23 1 10.9119 8.4800 -1.9880 24 1 11.1599 6.8738 -0.1886 25 6 7.6716 3.8731 -2.4115 26 6 4.0547 -1.4189 0.0468 27 6 3.4864 -0.6778 1.2591 28 7 2.0193 -0.6918 1.1995 29 6 1.4373 -0.1104 2.4166 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5136 0.8902 32 1 -0.3634 0.5142 -0.8897 33 1 1.6657 -1.7449 -1.2575 34 1 1.6888 -0.1988 -2.1399 35 1 3.5234 1.3675 -0.9534 36 1 7.9238 0.6209 -2.2469 37 1 7.7747 1.3355 -3.8816 38 1 9.7567 2.0729 -1.6588 39 1 10.0906 1.7616 -3.3951 40 1 8.8897 4.8010 -4.6706 41 1 8.9663 7.4152 -3.3466 42 1 7.0803 4.5097 -3.0697 43 1 7.7475 4.3271 -1.4233 44 1 5.1438 -1.3949 0.0833 45 1 3.7130 -2.4539 0.0600 46 1 3.8403 0.3532 1.2531 47 1 3.8174 -1.1700 2.1736 48 1 0.3517 -0.2010 2.3793 49 1 1.8164 -0.6412 3.2899 50 1 1.7120 0.9423 2.4836 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349214696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:26 Heat of formation + Delta-G solvation = -129.855568 kcal Electronic energy + Delta-G solvation = -31056.306305 eV Core-core repulsion = 26889.598654 eV Total energy + Delta-G solvation = -4166.707651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04143 -40.78339 -39.57868 -38.92115 -36.55848 -35.86661 -34.19843 -33.41948 -32.72001 -31.91910 -29.79615 -28.47287 -27.71987 -27.15335 -25.54052 -24.01970 -23.62365 -22.29947 -21.61222 -21.11564 -20.14461 -19.20098 -18.85860 -17.95518 -17.40920 -17.09627 -16.82744 -16.75365 -16.46728 -16.28918 -15.90042 -15.84061 -15.19331 -14.94455 -14.85066 -14.75920 -14.56987 -14.28953 -14.04630 -13.61101 -13.53700 -13.45413 -13.41663 -12.98734 -12.87306 -12.81076 -12.69723 -12.64698 -12.55494 -12.40673 -12.32903 -12.31721 -12.09401 -11.98973 -11.71997 -11.23699 -11.20063 -10.75533 -10.56452 -10.34594 -10.31301 -9.78599 -9.31668 -8.29528 -6.45518 0.29218 1.22774 1.43173 1.43610 1.51624 2.07130 2.35053 2.46892 2.90236 2.96502 3.25430 3.63823 3.71776 3.77246 3.90034 4.03690 4.08227 4.12745 4.24031 4.30632 4.33896 4.42778 4.51042 4.57054 4.59844 4.66401 4.72663 4.74291 4.86278 4.88940 4.90703 4.94789 4.95152 5.04898 5.06596 5.08161 5.13627 5.18178 5.29541 5.32770 5.38351 5.41592 5.71290 5.92750 6.01466 6.07941 6.11494 6.32515 6.56328 6.63612 6.87421 7.26305 7.36234 8.76814 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002567 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.028926 B =10905.749300 C =11350.441339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.026 0.974 4 C -0.111 4.111 5 C 0.138 3.862 6 H 0.093 0.907 7 N -0.685 5.685 8 C 0.521 3.479 9 O -0.524 6.524 10 C 0.499 3.501 11 O -0.564 6.564 12 N -0.582 5.582 13 C 0.109 3.891 14 C -0.115 4.115 15 C 0.235 3.765 16 O -0.589 6.589 17 C -0.558 4.558 18 H 0.069 0.931 19 C 0.026 3.974 20 N -0.917 5.917 21 Si 0.966 3.034 22 H -0.268 1.268 23 H -0.283 1.283 24 H -0.272 1.272 25 C 0.115 3.885 26 C -0.121 4.121 27 C 0.055 3.945 28 N -0.535 5.535 29 C 0.019 3.981 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.410 0.590 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.379 0.621 41 H 0.273 0.727 42 H 0.041 0.959 43 H 0.047 0.953 44 H 0.059 0.941 45 H 0.100 0.900 46 H 0.016 0.984 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.713 -15.769 7.425 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.036 4.036 3 H 0.044 0.956 4 C -0.149 4.149 5 C 0.035 3.965 6 H 0.111 0.889 7 N -0.339 5.339 8 C 0.302 3.698 9 O -0.401 6.401 10 C 0.283 3.717 11 O -0.444 6.444 12 N -0.314 5.314 13 C -0.012 4.012 14 C -0.153 4.153 15 C 0.194 3.806 16 O -0.398 6.398 17 C -0.596 4.596 18 H 0.087 0.913 19 C -0.174 4.174 20 N -0.556 5.556 21 Si 0.791 3.209 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.008 4.008 26 C -0.160 4.160 27 C -0.073 4.073 28 N -0.260 5.260 29 C -0.129 4.129 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.101 0.899 35 H 0.247 0.753 36 H 0.124 0.876 37 H 0.087 0.913 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.230 0.770 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.034 0.966 47 H 0.103 0.897 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -15.754 -16.936 7.264 24.244 hybrid contribution 0.597 3.124 0.519 3.222 sum -15.157 -13.812 7.782 21.933 Atomic orbital electron populations 1.21876 0.92457 1.03206 1.02502 1.21722 0.96926 0.94607 0.90366 0.95622 1.21940 0.91577 1.03890 0.97479 1.21385 0.95279 0.80295 0.99555 0.88867 1.45964 1.15176 1.11515 1.61204 1.19692 0.83340 0.87859 0.78955 1.90685 1.56542 1.45921 1.46940 1.20361 0.81503 0.90266 0.79607 1.90693 1.57140 1.47456 1.49136 1.48721 1.14342 1.11172 1.57197 1.22649 0.87612 0.91413 0.99547 1.22833 0.95887 0.94097 1.02458 1.19696 0.88771 0.92913 0.79220 1.86082 1.94510 1.34797 1.24436 1.21798 1.14037 0.91926 1.31809 0.91274 1.25824 0.96987 0.99608 0.95017 1.69661 1.32848 1.13639 1.39496 0.85481 0.79272 0.77301 0.78842 1.19341 1.20835 1.19766 1.22811 0.96237 0.81836 0.99918 1.21943 1.00104 1.00930 0.93014 1.22058 0.87622 0.98290 0.99296 1.62059 1.06556 1.54813 1.02605 1.22493 1.01425 0.96892 0.92099 0.90965 0.92048 0.91360 0.87466 0.89858 0.75267 0.87629 0.91329 0.89625 0.89037 0.76959 0.91795 0.94026 0.93472 0.92186 0.88126 0.96610 0.89748 0.89587 0.90771 0.96518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.77 71.98 0.63 -0.97 16 2 C 0.07 1.07 2.28 44.93 0.10 1.18 16 3 H 0.03 0.47 6.64 -2.39 -0.02 0.45 16 4 C -0.11 -1.53 5.03 30.65 0.15 -1.38 16 5 C 0.14 2.59 2.81 45.10 0.13 2.71 16 6 H 0.09 1.87 7.58 -2.39 -0.02 1.85 16 7 N -0.68 -16.97 4.34 -443.35 -1.92 -18.90 16 8 C 0.52 16.81 7.83 87.27 0.68 17.49 16 9 O -0.52 -17.60 13.44 -3.23 -0.04 -17.64 16 10 C 0.50 20.01 7.91 87.27 0.69 20.70 16 11 O -0.56 -25.00 16.80 -3.23 -0.05 -25.05 16 12 N -0.58 -24.89 3.33 -813.34 -2.70 -27.59 16 13 C 0.11 4.14 6.05 86.85 0.53 4.67 16 14 C -0.11 -4.64 6.23 31.99 0.20 -4.44 16 15 C 0.23 11.51 0.86 -10.35 -0.01 11.50 16 16 O -0.59 -30.36 13.08 -148.98 -1.95 -32.31 16 17 C -0.56 -29.13 8.11 25.60 0.21 -28.93 16 18 H 0.07 3.50 7.76 -2.91 -0.02 3.48 16 19 C 0.03 1.37 5.28 84.65 0.45 1.82 16 20 N -0.92 -49.13 10.97 21.45 0.24 -48.90 16 21 Si 0.97 41.56 29.54 68.60 2.03 43.59 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 25 C 0.11 5.67 5.54 86.73 0.48 6.15 16 26 C -0.12 -2.15 5.77 30.67 0.18 -1.97 16 27 C 0.06 0.99 5.32 86.32 0.46 1.44 16 28 N -0.54 -8.31 4.75 -897.16 -4.26 -12.57 16 29 C 0.02 0.25 9.05 127.69 1.16 1.41 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.66 6.32 -2.38 -0.02 0.65 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.41 10.10 6.48 -92.71 -0.60 9.50 16 36 H 0.11 3.64 6.16 -2.39 -0.01 3.63 16 37 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.09 3.27 8.02 -2.39 -0.02 3.25 16 39 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 40 H 0.38 20.30 6.98 -74.06 -0.52 19.78 16 41 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 42 H 0.04 2.25 8.07 -2.38 -0.02 2.23 16 43 H 0.05 2.52 7.81 -2.38 -0.02 2.50 16 44 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.02 0.34 7.69 -2.38 -0.02 0.33 16 47 H 0.08 1.36 8.09 -2.39 -0.02 1.34 16 48 H 0.09 0.94 6.21 -2.39 -0.01 0.93 16 49 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 50 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -61.26 387.90 -2.80 -64.06 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.16 Total: 43.92 kcal Atomic # 6 Polarization: 25.36 SS G_CDS: 6.03 Total: 31.39 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -8.65 Total: -107.95 kcal Atomic # 8 Polarization: -72.96 SS G_CDS: -2.05 Total: -75.00 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -61.26 -2.80 -64.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.794 kcal (2) G-P(sol) polarization free energy of solvation -61.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds