Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46507 * 2 1 4 4 C 1.53037 * 109.46302 * 240.02539 * 2 1 3 5 5 C 1.53118 * 109.27927 * 180.81487 * 4 2 1 6 6 H 1.09000 * 109.52383 * 177.62164 * 5 4 2 7 7 N 1.46498 * 109.52028 * 297.74520 * 5 4 2 8 8 C 1.34777 * 119.99828 * 204.72208 * 7 5 4 9 9 O 1.21353 * 120.00267 * 0.28147 * 8 7 5 10 10 C 1.49445 * 120.00114 * 180.27895 * 8 7 5 11 11 O 1.21353 * 120.00086 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00110 * 180.02562 * 10 8 7 13 13 C 1.47423 * 125.65114 * 359.68529 * 12 10 8 14 14 C 1.55123 * 104.72497 * 155.82027 * 13 12 10 15 15 C 1.55159 * 101.48550 * 37.29583 * 14 13 12 16 16 O 1.42901 * 110.71757 * 82.69776 * 15 14 13 17 17 C 1.50701 * 110.87431 * 205.89495 * 15 14 13 18 18 H 1.08001 * 120.00178 * 355.07233 * 17 15 14 19 19 C 1.37871 * 120.00081 * 175.06167 * 17 15 14 20 20 N 1.31516 * 120.00236 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00043 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47194 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46892 * 120.00602 * 21 19 17 24 24 H 1.48498 * 109.47061 * 240.00190 * 21 19 17 25 25 C 1.47029 * 125.64639 * 179.97438 * 12 10 8 26 26 C 1.53115 * 109.15934 * 57.65134 * 5 4 2 27 27 C 1.53040 * 109.28239 * 302.34317 * 26 5 4 28 28 N 1.46840 * 109.45718 * 119.97267 * 2 1 3 29 29 C 1.46899 * 111.00168 * 305.85229 * 28 2 1 30 30 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47042 * 299.97891 * 1 2 3 32 32 H 1.09002 * 109.47400 * 59.97472 * 1 2 3 33 33 H 1.08997 * 109.50224 * 60.87341 * 4 2 1 34 34 H 1.09001 * 109.50263 * 300.75294 * 4 2 1 35 35 H 0.97001 * 120.00384 * 25.00655 * 7 5 4 36 36 H 1.09001 * 110.36700 * 274.75316 * 13 12 10 37 37 H 1.09000 * 110.36209 * 37.07445 * 13 12 10 38 38 H 1.09005 * 111.19378 * 279.19519 * 14 13 12 39 39 H 1.09000 * 110.90752 * 155.27727 * 14 13 12 40 40 H 0.96695 * 114.00228 * 185.02616 * 16 15 14 41 41 H 0.96994 * 120.00746 * 179.97438 * 20 19 17 42 42 H 1.08991 * 109.88485 * 300.43675 * 25 12 10 43 43 H 1.09002 * 109.88098 * 61.60873 * 25 12 10 44 44 H 1.09003 * 109.50553 * 62.29196 * 26 5 4 45 45 H 1.09007 * 109.50295 * 182.40749 * 26 5 4 46 46 H 1.08998 * 109.45911 * 299.16993 * 27 26 5 47 47 H 1.08997 * 109.46127 * 179.19396 * 27 26 5 48 48 H 1.09004 * 109.47399 * 59.99750 * 29 28 2 49 49 H 1.09004 * 109.47431 * 179.97438 * 29 28 2 50 50 H 1.09003 * 109.47164 * 300.00008 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7363 -1.2354 6 1 3.9379 -1.2856 -2.1024 7 7 4.0747 0.6387 -1.2779 8 6 5.3064 0.8904 -1.7638 9 8 5.9962 -0.0214 -2.1708 10 6 5.8228 2.2923 -1.8014 11 8 5.1329 3.2041 -1.3949 12 7 7.0543 2.5440 -2.2878 13 6 7.9960 1.5353 -2.8065 14 6 8.9234 2.3207 -3.7706 15 6 9.0741 3.6715 -3.0223 16 8 10.0852 3.5822 -2.0165 17 6 9.3812 4.7882 -3.9866 18 1 9.5455 4.5695 -5.0314 19 6 9.4523 6.0889 -3.5351 20 7 9.2526 6.3552 -2.2628 21 14 9.8324 7.4731 -4.7305 22 1 10.0136 6.9138 -6.0941 23 1 8.7075 8.4426 -4.7390 24 1 11.0776 8.1635 -4.3087 25 6 7.6834 3.8694 -2.3832 26 6 4.0545 -1.4191 0.0469 27 6 3.4863 -0.6779 1.2593 28 7 2.0191 -0.6917 1.1994 29 6 1.4371 -0.1105 2.4165 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3634 0.5142 -0.8898 33 1 1.6896 -0.1981 -2.1399 34 1 1.6658 -1.7447 -1.2576 35 1 3.5235 1.3675 -0.9526 36 1 8.5737 1.1006 -1.9908 37 1 7.4580 0.7573 -3.3482 38 1 8.4513 2.4631 -4.7428 39 1 9.8872 1.8224 -3.8753 40 1 10.1662 4.3749 -1.4688 41 1 9.3030 7.2702 -1.9450 42 1 7.0770 4.5234 -3.0098 43 1 7.7911 4.3012 -1.3882 44 1 3.7122 -2.4539 0.0596 45 1 5.1437 -1.3951 0.0835 46 1 3.8403 0.3530 1.2533 47 1 3.8172 -1.1702 2.1737 48 1 0.3515 -0.2009 2.3792 49 1 1.8158 -0.6416 3.2898 50 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349214697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -108.192768 kcal Electronic energy + Delta-G solvation = -31068.237500 eV Core-core repulsion = 26902.469218 eV Total energy + Delta-G solvation = -4165.768282 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.77082 -39.59139 -38.22143 -37.22435 -35.35158 -34.23569 -32.74659 -32.26205 -31.74198 -30.15448 -27.96529 -27.68541 -26.63378 -25.81185 -23.98912 -23.17508 -22.21307 -21.49888 -20.01840 -19.49267 -19.24092 -17.38038 -17.18700 -16.50114 -16.17881 -15.81868 -15.71394 -15.57178 -15.26260 -14.81038 -14.73281 -14.39033 -14.08406 -13.90921 -13.50970 -13.03419 -12.96662 -12.85896 -12.83756 -12.74079 -12.37827 -12.32302 -12.21043 -12.02709 -11.78025 -11.64605 -11.55137 -11.32622 -11.10465 -11.04736 -10.95065 -10.78411 -10.60690 -10.49392 -10.48444 -10.18739 -9.35896 -9.27297 -9.09908 -8.69675 -8.59568 -8.35660 -8.03345 -6.31996 -4.40397 1.76435 2.62283 3.18399 3.27318 3.31070 3.56685 3.57686 3.87818 4.24942 4.35660 4.43462 4.61345 4.67339 4.83437 4.93219 4.96500 5.02017 5.12017 5.20660 5.25257 5.35592 5.40113 5.48678 5.50978 5.55732 5.62201 5.66682 5.75812 5.79156 5.79910 5.87533 5.88641 5.97425 6.03747 6.20708 6.39068 6.50647 6.73864 6.75891 6.79550 6.79797 6.82578 7.16270 7.20714 7.32399 7.69618 7.85693 8.00773 8.01878 8.41560 8.64031 9.26205 9.35075 10.75894 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.002548 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.289427 B =10988.368758 C =11408.209920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.076 3.924 3 H 0.042 0.958 4 C -0.118 4.118 5 C 0.142 3.858 6 H 0.095 0.905 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.504 3.496 11 O -0.540 6.540 12 N -0.575 5.575 13 C 0.099 3.901 14 C -0.121 4.121 15 C 0.247 3.753 16 O -0.583 6.583 17 C -0.535 4.535 18 H 0.068 0.932 19 C 0.069 3.931 20 N -0.895 5.895 21 Si 0.904 3.096 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.101 3.899 26 C -0.127 4.127 27 C 0.054 3.946 28 N -0.536 5.536 29 C 0.020 3.980 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.382 0.618 41 H 0.270 0.730 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.067 0.933 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.225 -14.004 5.580 21.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 H 0.060 0.940 4 C -0.156 4.156 5 C 0.037 3.963 6 H 0.113 0.887 7 N -0.358 5.358 8 C 0.294 3.706 9 O -0.391 6.391 10 C 0.287 3.713 11 O -0.420 6.420 12 N -0.307 5.307 13 C -0.023 4.023 14 C -0.159 4.159 15 C 0.207 3.793 16 O -0.392 6.392 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.134 4.134 20 N -0.534 5.534 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.020 4.020 26 C -0.166 4.166 27 C -0.074 4.074 28 N -0.262 5.262 29 C -0.128 4.128 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.245 0.755 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.232 0.768 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.095 0.905 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -15.217 -15.120 5.353 22.109 hybrid contribution 0.099 2.685 0.050 2.687 sum -15.118 -12.435 5.403 20.307 Atomic orbital electron populations 1.21913 0.93927 1.02660 1.02015 1.21653 0.95744 0.95507 0.90364 0.94024 1.21946 0.93611 1.02769 0.97324 1.21099 0.93694 0.82221 0.99248 0.88692 1.45942 1.16586 1.10028 1.63259 1.20412 0.82192 0.89936 0.78063 1.90694 1.56411 1.46433 1.45563 1.19615 0.82258 0.88663 0.80812 1.90721 1.56817 1.46068 1.48346 1.48718 1.13078 1.12039 1.56850 1.22689 0.90951 0.91120 0.97588 1.22857 0.98807 0.96562 0.97627 1.19534 0.82689 0.91549 0.85566 1.86129 1.58566 1.44404 1.50063 1.21542 1.49431 0.91088 0.95301 0.91353 1.25087 0.93565 0.99126 0.95585 1.69697 1.48949 1.21021 1.13727 0.86334 0.78050 0.81393 0.81062 1.19550 1.20790 1.20715 1.23230 0.96268 0.80489 1.02050 1.21981 1.01103 1.00035 0.93459 1.22091 0.86866 0.99495 0.98964 1.61996 1.07302 1.54808 1.02071 1.22432 1.00628 0.97465 0.92279 0.91620 0.92294 0.91976 0.90497 0.89192 0.75532 0.91377 0.89455 0.90424 0.90332 0.76810 0.92033 0.90922 0.91098 0.89903 0.90609 0.94510 0.90540 0.90889 0.91441 0.95549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.77 37.16 0.33 -0.68 16 2 C 0.08 0.63 2.28 -67.73 -0.15 0.48 16 3 H 0.04 0.40 6.64 -51.93 -0.34 0.06 16 4 C -0.12 -0.96 5.04 -26.65 -0.13 -1.09 16 5 C 0.14 1.46 2.81 -67.81 -0.19 1.27 16 6 H 0.10 1.04 7.58 -51.93 -0.39 0.65 16 7 N -0.70 -9.03 4.34 -54.12 -0.23 -9.27 16 8 C 0.51 8.43 7.82 -11.59 -0.09 8.34 16 9 O -0.52 -8.99 13.44 5.49 0.07 -8.91 16 10 C 0.50 10.04 7.91 -11.59 -0.09 9.95 16 11 O -0.54 -11.76 16.80 5.49 0.09 -11.67 16 12 N -0.57 -12.14 3.33 -170.89 -0.57 -12.71 16 13 C 0.10 1.91 6.07 -2.41 -0.01 1.89 16 14 C -0.12 -2.47 6.24 -24.47 -0.15 -2.62 16 15 C 0.25 5.96 0.85 -89.94 -0.08 5.89 16 16 O -0.58 -14.60 13.07 -35.23 -0.46 -15.06 16 17 C -0.54 -13.88 8.13 -34.44 -0.28 -14.16 16 18 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 19 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 20 N -0.90 -23.52 10.96 55.43 0.61 -22.91 16 21 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 25 C 0.10 2.41 5.24 -3.06 -0.02 2.40 16 26 C -0.13 -1.25 5.76 -26.65 -0.15 -1.40 16 27 C 0.05 0.52 5.32 -3.83 -0.02 0.50 16 28 N -0.54 -4.71 4.75 -234.93 -1.11 -5.83 16 29 C 0.02 0.15 9.05 60.06 0.54 0.70 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 6.32 -51.93 -0.33 0.05 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.41 5.14 6.48 -40.82 -0.26 4.88 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 1.58 6.14 -51.93 -0.32 1.26 16 38 H 0.08 1.52 8.05 -51.93 -0.42 1.11 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.38 9.71 7.44 45.56 0.34 10.05 16 41 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 42 H 0.07 1.87 7.81 -51.93 -0.41 1.47 16 43 H 0.07 1.83 7.91 -51.93 -0.41 1.42 16 44 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.04 0.42 7.69 -51.93 -0.40 0.02 16 47 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 48 H 0.07 0.48 6.21 -51.93 -0.32 0.16 16 49 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 50 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 LS Contribution 387.93 15.07 5.85 5.85 Total: -1.00 -28.57 387.93 -8.83 -37.41 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -7.46 Total: 14.69 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -0.60 Total: 13.15 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -1.31 Total: -50.71 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -0.29 Total: -35.64 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.57 -8.83 -37.41 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.784 kcal (2) G-P(sol) polarization free energy of solvation -28.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds