Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46507 * 2 1 4 4 C 1.53037 * 109.46302 * 240.02539 * 2 1 3 5 5 C 1.53118 * 109.27927 * 180.81487 * 4 2 1 6 6 H 1.09000 * 109.52383 * 177.62164 * 5 4 2 7 7 N 1.46498 * 109.52028 * 297.74520 * 5 4 2 8 8 C 1.34777 * 119.99828 * 204.72208 * 7 5 4 9 9 O 1.21353 * 120.00267 * 0.28147 * 8 7 5 10 10 C 1.49445 * 120.00114 * 180.27895 * 8 7 5 11 11 O 1.21353 * 120.00086 * 359.97438 * 10 8 7 12 12 N 1.34777 * 120.00110 * 180.02562 * 10 8 7 13 13 C 1.47423 * 125.65114 * 359.68529 * 12 10 8 14 14 C 1.55123 * 104.72497 * 155.82027 * 13 12 10 15 15 C 1.55159 * 101.48550 * 37.29583 * 14 13 12 16 16 O 1.42901 * 110.71757 * 82.69776 * 15 14 13 17 17 C 1.50701 * 110.87431 * 205.89495 * 15 14 13 18 18 H 1.08001 * 120.00178 * 355.07233 * 17 15 14 19 19 C 1.37871 * 120.00081 * 175.06167 * 17 15 14 20 20 N 1.31516 * 120.00236 * 0.02562 * 19 17 15 21 21 Si 1.86804 * 120.00043 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47194 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46892 * 120.00602 * 21 19 17 24 24 H 1.48498 * 109.47061 * 240.00190 * 21 19 17 25 25 C 1.47029 * 125.64639 * 179.97438 * 12 10 8 26 26 C 1.53115 * 109.15934 * 57.65134 * 5 4 2 27 27 C 1.53040 * 109.28239 * 302.34317 * 26 5 4 28 28 N 1.46840 * 109.45718 * 119.97267 * 2 1 3 29 29 C 1.46899 * 111.00168 * 305.85229 * 28 2 1 30 30 H 1.08998 * 109.47114 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47042 * 299.97891 * 1 2 3 32 32 H 1.09002 * 109.47400 * 59.97472 * 1 2 3 33 33 H 1.08997 * 109.50224 * 60.87341 * 4 2 1 34 34 H 1.09001 * 109.50263 * 300.75294 * 4 2 1 35 35 H 0.97001 * 120.00384 * 25.00655 * 7 5 4 36 36 H 1.09001 * 110.36700 * 274.75316 * 13 12 10 37 37 H 1.09000 * 110.36209 * 37.07445 * 13 12 10 38 38 H 1.09005 * 111.19378 * 279.19519 * 14 13 12 39 39 H 1.09000 * 110.90752 * 155.27727 * 14 13 12 40 40 H 0.96695 * 114.00228 * 185.02616 * 16 15 14 41 41 H 0.96994 * 120.00746 * 179.97438 * 20 19 17 42 42 H 1.08991 * 109.88485 * 300.43675 * 25 12 10 43 43 H 1.09002 * 109.88098 * 61.60873 * 25 12 10 44 44 H 1.09003 * 109.50553 * 62.29196 * 26 5 4 45 45 H 1.09007 * 109.50295 * 182.40749 * 26 5 4 46 46 H 1.08998 * 109.45911 * 299.16993 * 27 26 5 47 47 H 1.08997 * 109.46127 * 179.19396 * 27 26 5 48 48 H 1.09004 * 109.47399 * 59.99750 * 29 28 2 49 49 H 1.09004 * 109.47431 * 179.97438 * 29 28 2 50 50 H 1.09003 * 109.47164 * 300.00008 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5710 -0.7363 -1.2354 6 1 3.9379 -1.2856 -2.1024 7 7 4.0747 0.6387 -1.2779 8 6 5.3064 0.8904 -1.7638 9 8 5.9962 -0.0214 -2.1708 10 6 5.8228 2.2923 -1.8014 11 8 5.1329 3.2041 -1.3949 12 7 7.0543 2.5440 -2.2878 13 6 7.9960 1.5353 -2.8065 14 6 8.9234 2.3207 -3.7706 15 6 9.0741 3.6715 -3.0223 16 8 10.0852 3.5822 -2.0165 17 6 9.3812 4.7882 -3.9866 18 1 9.5455 4.5695 -5.0314 19 6 9.4523 6.0889 -3.5351 20 7 9.2526 6.3552 -2.2628 21 14 9.8324 7.4731 -4.7305 22 1 10.0136 6.9138 -6.0941 23 1 8.7075 8.4426 -4.7390 24 1 11.0776 8.1635 -4.3087 25 6 7.6834 3.8694 -2.3832 26 6 4.0545 -1.4191 0.0469 27 6 3.4863 -0.6779 1.2593 28 7 2.0191 -0.6917 1.1994 29 6 1.4371 -0.1105 2.4165 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5135 0.8902 32 1 -0.3634 0.5142 -0.8898 33 1 1.6896 -0.1981 -2.1399 34 1 1.6658 -1.7447 -1.2576 35 1 3.5235 1.3675 -0.9526 36 1 8.5737 1.1006 -1.9908 37 1 7.4580 0.7573 -3.3482 38 1 8.4513 2.4631 -4.7428 39 1 9.8872 1.8224 -3.8753 40 1 10.1662 4.3749 -1.4688 41 1 9.3030 7.2702 -1.9450 42 1 7.0770 4.5234 -3.0098 43 1 7.7911 4.3012 -1.3882 44 1 3.7122 -2.4539 0.0596 45 1 5.1437 -1.3951 0.0835 46 1 3.8403 0.3530 1.2533 47 1 3.8172 -1.1702 2.1737 48 1 0.3515 -0.2009 2.3792 49 1 1.8158 -0.6416 3.2898 50 1 1.7119 0.9422 2.4837 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349214697.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -129.872085 kcal Electronic energy + Delta-G solvation = -31069.177585 eV Core-core repulsion = 26902.469218 eV Total energy + Delta-G solvation = -4166.708367 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.04031 -40.78650 -39.58078 -38.91736 -36.54626 -35.84948 -34.25983 -33.42185 -32.72121 -31.90145 -29.75504 -28.47330 -27.71942 -27.15635 -25.54177 -24.02439 -23.62850 -22.29829 -21.62330 -21.11698 -20.14530 -19.14892 -18.85740 -17.94819 -17.44374 -17.05665 -16.81629 -16.79544 -16.44681 -16.30070 -15.92396 -15.83672 -15.15362 -14.97728 -14.84190 -14.78723 -14.59202 -14.24536 -14.05250 -13.64745 -13.53092 -13.46618 -13.37613 -12.98811 -12.89660 -12.81064 -12.68940 -12.64862 -12.54235 -12.40660 -12.37557 -12.25789 -12.08972 -11.98429 -11.72205 -11.22142 -11.19973 -10.77608 -10.55936 -10.33289 -10.31076 -9.77685 -9.32143 -8.28736 -6.44420 0.29477 1.23228 1.40424 1.43657 1.54290 2.07570 2.35299 2.47401 2.89895 2.97787 3.25626 3.63691 3.71790 3.76547 3.90076 4.01445 4.07760 4.12823 4.23982 4.30659 4.34335 4.42345 4.50643 4.58040 4.59650 4.66711 4.72680 4.74132 4.86053 4.88850 4.92644 4.94843 4.95300 5.04839 5.06595 5.08507 5.13174 5.18253 5.29055 5.32869 5.38441 5.42880 5.70816 5.93448 6.03335 6.07573 6.11383 6.33074 6.57114 6.65105 6.87759 7.24777 7.32826 8.77839 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021235 B = 0.002548 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.289427 B =10988.368758 C =11408.209920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 H 0.026 0.974 4 C -0.110 4.110 5 C 0.138 3.862 6 H 0.094 0.906 7 N -0.685 5.685 8 C 0.521 3.479 9 O -0.524 6.524 10 C 0.499 3.501 11 O -0.564 6.564 12 N -0.583 5.583 13 C 0.109 3.891 14 C -0.114 4.114 15 C 0.233 3.767 16 O -0.587 6.587 17 C -0.555 4.555 18 H 0.068 0.932 19 C 0.026 3.974 20 N -0.915 5.915 21 Si 0.965 3.035 22 H -0.265 1.265 23 H -0.282 1.282 24 H -0.278 1.278 25 C 0.118 3.882 26 C -0.122 4.122 27 C 0.055 3.945 28 N -0.535 5.535 29 C 0.019 3.981 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.410 0.590 36 H 0.068 0.932 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.376 0.624 41 H 0.271 0.729 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.101 0.899 45 H 0.058 0.942 46 H 0.015 0.985 47 H 0.083 0.917 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.567 -15.631 5.007 23.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.037 4.037 3 H 0.044 0.956 4 C -0.148 4.148 5 C 0.035 3.965 6 H 0.112 0.888 7 N -0.339 5.339 8 C 0.302 3.698 9 O -0.401 6.401 10 C 0.282 3.718 11 O -0.444 6.444 12 N -0.315 5.315 13 C -0.013 4.013 14 C -0.152 4.152 15 C 0.193 3.807 16 O -0.394 6.394 17 C -0.593 4.593 18 H 0.086 0.914 19 C -0.175 4.175 20 N -0.554 5.554 21 Si 0.790 3.210 22 H -0.190 1.190 23 H -0.208 1.208 24 H -0.204 1.204 25 C -0.004 4.004 26 C -0.160 4.160 27 C -0.073 4.073 28 N -0.260 5.260 29 C -0.129 4.129 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.126 0.874 35 H 0.247 0.753 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.225 0.775 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.119 0.881 45 H 0.077 0.923 46 H 0.033 0.967 47 H 0.102 0.898 48 H 0.105 0.895 49 H 0.092 0.908 50 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -16.591 -16.786 4.787 24.082 hybrid contribution 0.446 3.183 0.299 3.228 sum -16.144 -13.604 5.087 21.716 Atomic orbital electron populations 1.21877 0.92424 1.03214 1.02512 1.21728 0.96950 0.94608 0.90375 0.95645 1.21938 0.91514 1.03902 0.97481 1.21370 0.95317 0.80288 0.99515 0.88768 1.45967 1.15028 1.11523 1.61354 1.19696 0.83285 0.87871 0.78987 1.90685 1.56931 1.45815 1.46664 1.20358 0.81561 0.90259 0.79581 1.90697 1.57341 1.47408 1.48999 1.48753 1.13926 1.11260 1.57600 1.22698 0.90492 0.90694 0.97381 1.22863 0.99898 0.94648 0.97803 1.19728 0.82191 0.93343 0.85433 1.86120 1.59022 1.44055 1.50252 1.21820 1.49818 0.92047 0.95639 0.91376 1.25810 0.93395 1.01221 0.97027 1.69795 1.49239 1.21401 1.14982 0.85399 0.77689 0.78582 0.79329 1.18957 1.20830 1.20366 1.22753 0.96340 0.81620 0.99714 1.21933 1.00027 1.00976 0.93104 1.22056 0.87675 0.98237 0.99303 1.62053 1.06491 1.54818 1.02632 1.22493 1.01444 0.96874 0.92103 0.90953 0.92079 0.91310 0.89739 0.87445 0.75278 0.91336 0.87584 0.89542 0.89055 0.77473 0.91995 0.93528 0.93911 0.88078 0.92331 0.96702 0.89811 0.89542 0.90802 0.96542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 8.77 71.98 0.63 -0.97 16 2 C 0.07 1.07 2.28 44.94 0.10 1.17 16 3 H 0.03 0.47 6.64 -2.38 -0.02 0.45 16 4 C -0.11 -1.51 5.04 30.65 0.15 -1.36 16 5 C 0.14 2.59 2.81 45.07 0.13 2.72 16 6 H 0.09 1.86 7.58 -2.39 -0.02 1.85 16 7 N -0.69 -17.00 4.34 -443.50 -1.92 -18.93 16 8 C 0.52 16.82 7.82 87.27 0.68 17.51 16 9 O -0.52 -17.59 13.44 -3.26 -0.04 -17.64 16 10 C 0.50 20.04 7.91 87.27 0.69 20.73 16 11 O -0.56 -25.11 16.80 -3.26 -0.05 -25.17 16 12 N -0.58 -24.92 3.33 -812.94 -2.70 -27.63 16 13 C 0.11 4.11 6.07 86.93 0.53 4.64 16 14 C -0.11 -4.60 6.24 32.06 0.20 -4.40 16 15 C 0.23 11.41 0.85 -10.35 -0.01 11.40 16 16 O -0.59 -29.87 13.07 -148.98 -1.95 -31.81 16 17 C -0.56 -29.01 8.13 25.60 0.21 -28.80 16 18 H 0.07 3.48 7.78 -2.91 -0.02 3.46 16 19 C 0.03 1.38 5.28 84.65 0.45 1.82 16 20 N -0.92 -49.12 10.96 21.45 0.24 -48.88 16 21 Si 0.96 41.71 29.54 68.60 2.03 43.74 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.12 5.85 5.24 86.73 0.45 6.31 16 26 C -0.12 -2.20 5.76 30.65 0.18 -2.03 16 27 C 0.06 1.01 5.32 86.33 0.46 1.47 16 28 N -0.53 -8.42 4.75 -897.17 -4.26 -12.68 16 29 C 0.02 0.26 9.05 127.69 1.16 1.41 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.66 6.32 -2.39 -0.02 0.65 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.41 10.13 6.48 -92.71 -0.60 9.53 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.11 3.65 6.14 -2.39 -0.01 3.63 16 38 H 0.09 3.30 8.05 -2.38 -0.02 3.28 16 39 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 40 H 0.38 19.75 7.44 -74.06 -0.55 19.20 16 41 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.05 2.50 7.81 -2.39 -0.02 2.48 16 43 H 0.04 2.32 7.91 -2.39 -0.02 2.30 16 44 H 0.10 1.49 8.14 -2.39 -0.02 1.48 16 45 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 46 H 0.01 0.33 7.69 -2.39 -0.02 0.31 16 47 H 0.08 1.39 8.09 -2.39 -0.02 1.38 16 48 H 0.09 0.96 6.21 -2.38 -0.01 0.95 16 49 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 50 H 0.02 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -61.47 387.93 -2.85 -64.33 By element: Atomic # 1 Polarization: 43.23 SS G_CDS: -0.19 Total: 43.04 kcal Atomic # 6 Polarization: 25.63 SS G_CDS: 6.01 Total: 31.63 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -8.65 Total: -108.12 kcal Atomic # 8 Polarization: -72.57 SS G_CDS: -2.05 Total: -74.62 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -61.47 -2.85 -64.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349214697.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.545 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds