Wall clock time and date at job start Sat Apr 11 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 108.48221 * 2 1 4 4 C 1.47691 * 108.64585 * 242.06359 * 2 1 3 5 5 C 1.55428 * 109.70210 * 178.04105 * 4 2 1 6 6 N 1.44451 * 109.02151 * 69.92908 * 5 4 2 7 7 C 1.34783 * 118.51181 * 91.19097 * 6 5 4 8 8 O 1.21346 * 119.99927 * 180.94093 * 7 6 5 9 9 C 1.49446 * 119.99949 * 0.93593 * 7 6 5 10 10 O 1.21351 * 120.00353 * 353.77844 * 9 7 6 11 11 N 1.34780 * 119.99899 * 173.77898 * 9 7 6 12 12 C 1.46496 * 120.00026 * 179.97438 * 11 9 7 13 13 C 1.53044 * 109.46359 * 275.07155 * 12 11 9 14 14 C 1.53189 * 109.31444 * 178.61355 * 13 12 11 15 15 N 1.46920 * 108.77389 * 54.63378 * 14 13 12 16 16 C 1.36939 * 120.63223 * 126.37073 * 15 14 13 17 17 H 1.08003 * 120.00245 * 215.29597 * 16 15 14 18 18 C 1.38813 * 119.99756 * 35.29268 * 16 15 14 19 19 N 1.31619 * 120.00142 * 355.59650 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 175.59329 * 18 16 15 21 21 H 1.48505 * 109.47110 * 89.99812 * 20 18 16 22 22 H 1.48500 * 109.47446 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47062 * 330.00164 * 20 18 16 24 24 C 1.46925 * 118.74226 * 306.39104 * 15 14 13 25 25 C 1.53037 * 109.46035 * 154.99823 * 12 11 9 26 26 C 1.48187 * 122.97642 * 270.90292 * 6 5 4 27 27 C 1.54290 * 110.68795 * 41.50956 * 26 6 5 28 28 O 1.40521 * 109.87183 * 39.38487 * 27 26 6 29 29 H 1.09002 * 109.46718 * 302.05152 * 1 2 3 30 30 H 1.08993 * 109.47469 * 62.05526 * 1 2 3 31 31 H 1.08999 * 109.46986 * 182.05862 * 1 2 3 32 32 H 1.08997 * 109.43450 * 298.17921 * 4 2 1 33 33 H 1.08998 * 109.43711 * 58.04365 * 4 2 1 34 34 H 1.09002 * 109.54657 * 310.12614 * 5 4 2 35 35 H 1.08997 * 109.74299 * 189.85060 * 5 4 2 36 36 H 0.96996 * 119.99854 * 359.72519 * 11 9 7 37 37 H 1.09011 * 109.45938 * 35.02519 * 12 11 9 38 38 H 1.09006 * 109.49403 * 298.56785 * 13 12 11 39 39 H 1.09000 * 109.49390 * 58.65782 * 13 12 11 40 40 H 1.09001 * 109.58761 * 294.84582 * 14 13 12 41 41 H 1.08996 * 109.58821 * 174.41965 * 14 13 12 42 42 H 0.96997 * 119.99776 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.58224 * 293.82509 * 24 15 14 44 44 H 1.09001 * 109.58839 * 173.40220 * 24 15 14 45 45 H 1.08991 * 109.50174 * 301.34024 * 25 12 11 46 46 H 1.08998 * 109.49404 * 61.44136 * 25 12 11 47 47 H 1.08996 * 109.23115 * 161.81974 * 26 6 5 48 48 H 1.08997 * 109.23392 * 281.23507 * 26 6 5 49 49 H 1.09009 * 109.40231 * 159.50766 * 27 26 6 50 50 H 1.09004 * 109.40724 * 279.25478 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8755 1.0338 0.0000 4 6 2.0021 -0.6556 -1.2363 5 6 3.5554 -0.6250 -1.2853 6 7 4.0759 -1.5174 -0.2758 7 6 4.3236 -2.7981 -0.6150 8 8 4.7450 -3.5753 0.2161 9 6 4.0791 -3.2609 -2.0148 10 8 3.5527 -2.5175 -2.8165 11 7 4.4433 -4.5041 -2.3868 12 6 4.2031 -4.9581 -3.7588 13 6 2.7758 -5.4982 -3.8748 14 6 2.5169 -5.9398 -5.3186 15 7 3.5585 -6.8975 -5.7141 16 6 3.2221 -8.1254 -6.2184 17 1 3.8303 -8.9882 -5.9898 18 6 2.0994 -8.2612 -7.0233 19 7 1.3099 -7.2289 -7.2313 20 14 1.7091 -9.9093 -7.8115 21 1 0.8453 -10.7018 -6.8998 22 1 0.9997 -9.6876 -9.0971 23 1 2.9719 -10.6486 -8.0641 24 6 4.9679 -6.5130 -5.5579 25 6 5.1994 -6.0649 -4.1114 26 6 4.3558 -1.0871 1.1144 27 6 3.2346 -0.1641 1.6355 28 8 1.9859 -0.6329 1.1933 29 1 -0.3633 0.5454 0.8711 30 1 -0.3634 0.4815 -0.9078 31 1 -0.3633 -1.0270 0.0369 32 1 1.6582 -1.6898 -1.2525 33 1 1.6026 -0.1276 -2.1022 34 1 3.9064 0.3885 -1.0910 35 1 3.8992 -0.9474 -2.2681 36 1 4.8677 -5.0970 -1.7471 37 1 4.3315 -4.1215 -4.4458 38 1 2.6539 -6.3504 -3.2062 39 1 2.0676 -4.7162 -3.6009 40 1 2.5492 -5.0720 -5.9775 41 1 1.5386 -6.4157 -5.3853 42 1 0.5256 -7.3238 -7.7941 43 1 5.2000 -5.6920 -6.2363 44 1 5.6068 -7.3671 -5.7826 45 1 6.2161 -5.6864 -4.0061 46 1 5.0546 -6.9118 -3.4407 47 1 4.4243 -1.9660 1.7553 48 1 5.3036 -0.5494 1.1399 49 1 3.2520 -0.1530 2.7254 50 1 3.3949 0.8472 1.2617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001351155009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:34 Heat of formation + Delta-G solvation = -72.701616 kcal Electronic energy + Delta-G solvation = -31109.867857 eV Core-core repulsion = 26945.638587 eV Total energy + Delta-G solvation = -4164.229270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.16863 -39.58632 -38.49209 -37.38356 -35.81128 -34.34869 -34.17675 -32.15577 -30.11587 -29.79059 -29.51628 -28.97561 -25.80624 -24.52693 -24.36042 -22.42245 -22.20190 -21.59664 -21.11659 -20.05070 -19.18626 -17.86057 -17.45664 -16.86419 -16.69803 -16.27343 -15.81832 -15.52004 -15.31634 -14.92861 -14.53780 -14.35903 -13.98208 -13.86964 -13.51533 -13.49902 -13.39434 -13.27190 -13.00243 -12.61456 -12.48198 -12.41320 -12.24093 -11.98697 -11.84546 -11.53254 -11.34990 -11.05077 -10.99281 -10.89734 -10.83151 -10.81722 -10.38947 -10.22997 -10.08703 -9.92494 -9.82509 -9.72855 -9.19500 -8.95089 -8.70359 -8.43356 -6.58962 -5.79425 -3.33289 1.46481 2.29493 3.23431 3.36236 3.38342 3.43534 3.44993 3.55832 4.36880 4.44202 4.46844 4.51125 4.68914 4.77597 4.90922 5.02983 5.05508 5.18618 5.25657 5.34701 5.38856 5.41231 5.44299 5.50654 5.54210 5.60832 5.62232 5.76622 5.79759 5.91744 6.04211 6.08169 6.22345 6.25380 6.32722 6.41730 6.57031 6.65683 6.75310 6.80013 6.91063 6.92467 7.02553 7.37037 7.44100 7.76041 7.77305 7.81553 8.10562 8.51952 9.23104 9.81528 10.40749 11.26309 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.002545 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.925914 B =10998.426994 C =11866.122456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.085 3.915 3 H 0.054 0.946 4 C -0.154 4.154 5 C 0.078 3.922 6 N -0.574 5.574 7 C 0.504 3.496 8 O -0.525 6.525 9 C 0.504 3.496 10 O -0.513 6.513 11 N -0.689 5.689 12 C 0.148 3.852 13 C -0.148 4.148 14 C 0.170 3.830 15 N -0.594 5.594 16 C -0.256 4.256 17 H 0.064 0.936 18 C 0.009 3.991 19 N -0.903 5.903 20 Si 0.904 3.096 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.278 1.278 24 C 0.150 3.850 25 C -0.141 4.141 26 C 0.078 3.922 27 C 0.053 3.947 28 O -0.363 6.363 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.138 0.862 36 H 0.407 0.593 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.104 0.896 42 H 0.255 0.745 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.097 0.903 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.755 17.300 15.797 23.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.028 3.972 3 H 0.072 0.928 4 C -0.192 4.192 5 C -0.044 4.044 6 N -0.308 5.308 7 C 0.287 3.713 8 O -0.402 6.402 9 C 0.284 3.716 10 O -0.390 6.390 11 N -0.339 5.339 12 C 0.046 3.954 13 C -0.189 4.189 14 C 0.044 3.956 15 N -0.317 5.317 16 C -0.385 4.385 17 H 0.082 0.918 18 C -0.189 4.189 19 N -0.547 5.547 20 Si 0.733 3.267 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.022 3.978 25 C -0.181 4.181 26 C -0.044 4.044 27 C -0.026 4.026 28 O -0.282 6.282 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.242 0.758 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.039 0.961 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.117 0.883 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.329 17.288 15.630 23.704 hybrid contribution 0.072 -0.789 -0.110 0.800 sum 4.401 16.499 15.520 23.075 Atomic orbital electron populations 1.21923 0.93594 1.03197 1.02224 1.21194 0.95430 0.95088 0.85535 0.92784 1.21971 0.96113 1.03413 0.97717 1.22669 0.93782 0.93285 0.94707 1.47594 1.62418 1.09598 1.11161 1.20436 0.78857 0.82844 0.89197 1.90723 1.44523 1.53495 1.51423 1.19978 0.80282 0.83312 0.88006 1.90572 1.42309 1.52682 1.53475 1.46248 1.59219 1.13609 1.14851 1.21260 0.97013 0.97128 0.80035 1.22642 0.93960 0.99528 1.02734 1.20980 0.95570 0.91916 0.87179 1.44053 0.98946 1.15129 1.73599 1.19145 1.10567 0.85617 1.23217 0.91806 1.25331 0.98940 0.97233 0.97438 1.69881 1.15406 1.29246 1.40190 0.86279 0.78039 0.83364 0.78995 1.21412 1.21529 1.20392 1.20862 0.88137 0.97688 0.91087 1.22374 0.96898 0.97424 1.01376 1.22810 0.98141 1.01014 0.82397 1.22822 0.83744 0.96102 0.99912 1.87514 1.34356 1.64972 1.41321 0.92202 0.91046 0.91679 0.90496 0.89232 0.91627 0.84520 0.75804 0.89598 0.92584 0.92866 0.96389 0.87784 0.93445 0.96104 0.92205 0.92496 0.91656 0.88343 0.90716 0.88546 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.43 37.16 0.35 -0.94 16 2 C 0.08 0.78 2.64 -29.30 -0.08 0.70 16 3 H 0.05 0.40 7.28 -51.93 -0.38 0.02 16 4 C -0.15 -1.60 4.68 -28.01 -0.13 -1.73 16 5 C 0.08 0.81 5.05 -3.85 -0.02 0.79 16 6 N -0.57 -6.67 2.54 -172.09 -0.44 -7.11 16 7 C 0.50 7.17 7.69 -11.58 -0.09 7.08 16 8 O -0.53 -8.38 15.78 5.50 0.09 -8.29 16 9 C 0.50 7.61 7.69 -11.59 -0.09 7.52 16 10 O -0.51 -8.26 11.96 5.50 0.07 -8.19 16 11 N -0.69 -10.35 5.07 -54.19 -0.27 -10.62 16 12 C 0.15 2.54 2.41 -67.89 -0.16 2.37 16 13 C -0.15 -2.94 5.65 -26.61 -0.15 -3.09 16 14 C 0.17 4.07 5.27 -3.72 -0.02 4.05 16 15 N -0.59 -14.65 3.00 -172.32 -0.52 -15.17 16 16 C -0.26 -6.91 9.55 -15.06 -0.14 -7.05 16 17 H 0.06 1.69 7.83 -52.48 -0.41 1.28 16 18 C 0.01 0.26 5.32 -17.43 -0.09 0.16 16 19 N -0.90 -25.82 10.60 55.49 0.59 -25.23 16 20 Si 0.90 21.44 29.56 -169.99 -5.02 16.42 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 25 C -0.14 -2.34 5.55 -26.61 -0.15 -2.48 16 26 C 0.08 0.72 6.56 -2.44 -0.02 0.70 16 27 C 0.05 0.40 6.49 37.83 0.25 0.65 16 28 O -0.36 -3.90 9.82 -34.09 -0.33 -4.24 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.13 -51.93 -0.42 0.08 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 1.03 7.89 -51.93 -0.41 0.62 16 33 H 0.09 0.83 8.13 -51.93 -0.42 0.40 16 34 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 35 H 0.14 1.66 4.78 -54.04 -0.26 1.40 16 36 H 0.41 5.62 8.09 -40.82 -0.33 5.29 16 37 H 0.09 1.57 7.58 -51.92 -0.39 1.18 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 2.82 5.90 -51.93 -0.31 2.52 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 45 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.10 1.05 6.99 -51.93 -0.36 0.68 16 48 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.57 8.14 -51.92 -0.42 0.14 16 50 H 0.06 0.33 7.21 -51.93 -0.37 -0.04 16 LS Contribution 385.73 15.07 5.81 5.81 Total: -1.00 -31.08 385.73 -8.87 -39.95 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.26 Total: 4.94 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: -0.57 Total: 11.73 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.64 Total: -58.13 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.18 Total: -20.72 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.08 -8.87 -39.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351155009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.752 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds