Wall clock time and date at job start Sat Apr 11 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 108.48221 * 2 1 4 4 C 1.47691 * 108.64585 * 242.06359 * 2 1 3 5 5 C 1.55428 * 109.70210 * 178.04105 * 4 2 1 6 6 N 1.44451 * 109.02151 * 69.92908 * 5 4 2 7 7 C 1.34783 * 118.51181 * 91.19097 * 6 5 4 8 8 O 1.21346 * 119.99927 * 180.94093 * 7 6 5 9 9 C 1.49446 * 119.99949 * 0.93593 * 7 6 5 10 10 O 1.21351 * 120.00353 * 353.77844 * 9 7 6 11 11 N 1.34780 * 119.99899 * 173.77898 * 9 7 6 12 12 C 1.46496 * 120.00026 * 179.97438 * 11 9 7 13 13 C 1.53044 * 109.46359 * 275.07155 * 12 11 9 14 14 C 1.53189 * 109.31444 * 178.61355 * 13 12 11 15 15 N 1.46920 * 108.77389 * 54.63378 * 14 13 12 16 16 C 1.36939 * 120.63223 * 126.37073 * 15 14 13 17 17 H 1.08003 * 120.00245 * 215.29597 * 16 15 14 18 18 C 1.38813 * 119.99756 * 35.29268 * 16 15 14 19 19 N 1.31619 * 120.00142 * 355.59650 * 18 16 15 20 20 Si 1.86801 * 120.00011 * 175.59329 * 18 16 15 21 21 H 1.48505 * 109.47110 * 89.99812 * 20 18 16 22 22 H 1.48500 * 109.47446 * 210.00081 * 20 18 16 23 23 H 1.48500 * 109.47062 * 330.00164 * 20 18 16 24 24 C 1.46925 * 118.74226 * 306.39104 * 15 14 13 25 25 C 1.53037 * 109.46035 * 154.99823 * 12 11 9 26 26 C 1.48187 * 122.97642 * 270.90292 * 6 5 4 27 27 C 1.54290 * 110.68795 * 41.50956 * 26 6 5 28 28 O 1.40521 * 109.87183 * 39.38487 * 27 26 6 29 29 H 1.09002 * 109.46718 * 302.05152 * 1 2 3 30 30 H 1.08993 * 109.47469 * 62.05526 * 1 2 3 31 31 H 1.08999 * 109.46986 * 182.05862 * 1 2 3 32 32 H 1.08997 * 109.43450 * 298.17921 * 4 2 1 33 33 H 1.08998 * 109.43711 * 58.04365 * 4 2 1 34 34 H 1.09002 * 109.54657 * 310.12614 * 5 4 2 35 35 H 1.08997 * 109.74299 * 189.85060 * 5 4 2 36 36 H 0.96996 * 119.99854 * 359.72519 * 11 9 7 37 37 H 1.09011 * 109.45938 * 35.02519 * 12 11 9 38 38 H 1.09006 * 109.49403 * 298.56785 * 13 12 11 39 39 H 1.09000 * 109.49390 * 58.65782 * 13 12 11 40 40 H 1.09001 * 109.58761 * 294.84582 * 14 13 12 41 41 H 1.08996 * 109.58821 * 174.41965 * 14 13 12 42 42 H 0.96997 * 119.99776 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.58224 * 293.82509 * 24 15 14 44 44 H 1.09001 * 109.58839 * 173.40220 * 24 15 14 45 45 H 1.08991 * 109.50174 * 301.34024 * 25 12 11 46 46 H 1.08998 * 109.49404 * 61.44136 * 25 12 11 47 47 H 1.08996 * 109.23115 * 161.81974 * 26 6 5 48 48 H 1.08997 * 109.23392 * 281.23507 * 26 6 5 49 49 H 1.09009 * 109.40231 * 159.50766 * 27 26 6 50 50 H 1.09004 * 109.40724 * 279.25478 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8755 1.0338 0.0000 4 6 2.0021 -0.6556 -1.2363 5 6 3.5554 -0.6250 -1.2853 6 7 4.0759 -1.5174 -0.2758 7 6 4.3236 -2.7981 -0.6150 8 8 4.7450 -3.5753 0.2161 9 6 4.0791 -3.2609 -2.0148 10 8 3.5527 -2.5175 -2.8165 11 7 4.4433 -4.5041 -2.3868 12 6 4.2031 -4.9581 -3.7588 13 6 2.7758 -5.4982 -3.8748 14 6 2.5169 -5.9398 -5.3186 15 7 3.5585 -6.8975 -5.7141 16 6 3.2221 -8.1254 -6.2184 17 1 3.8303 -8.9882 -5.9898 18 6 2.0994 -8.2612 -7.0233 19 7 1.3099 -7.2289 -7.2313 20 14 1.7091 -9.9093 -7.8115 21 1 0.8453 -10.7018 -6.8998 22 1 0.9997 -9.6876 -9.0971 23 1 2.9719 -10.6486 -8.0641 24 6 4.9679 -6.5130 -5.5579 25 6 5.1994 -6.0649 -4.1114 26 6 4.3558 -1.0871 1.1144 27 6 3.2346 -0.1641 1.6355 28 8 1.9859 -0.6329 1.1933 29 1 -0.3633 0.5454 0.8711 30 1 -0.3634 0.4815 -0.9078 31 1 -0.3633 -1.0270 0.0369 32 1 1.6582 -1.6898 -1.2525 33 1 1.6026 -0.1276 -2.1022 34 1 3.9064 0.3885 -1.0910 35 1 3.8992 -0.9474 -2.2681 36 1 4.8677 -5.0970 -1.7471 37 1 4.3315 -4.1215 -4.4458 38 1 2.6539 -6.3504 -3.2062 39 1 2.0676 -4.7162 -3.6009 40 1 2.5492 -5.0720 -5.9775 41 1 1.5386 -6.4157 -5.3853 42 1 0.5256 -7.3238 -7.7941 43 1 5.2000 -5.6920 -6.2363 44 1 5.6068 -7.3671 -5.7826 45 1 6.2161 -5.6864 -4.0061 46 1 5.0546 -6.9118 -3.4407 47 1 4.4243 -1.9660 1.7553 48 1 5.3036 -0.5494 1.1399 49 1 3.2520 -0.1530 2.7254 50 1 3.3949 0.8472 1.2617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001351155009.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:33 Heat of formation + Delta-G solvation = -93.680699 kcal Electronic energy + Delta-G solvation = -31110.777578 eV Core-core repulsion = 26945.638587 eV Total energy + Delta-G solvation = -4165.138991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.22522 -40.57564 -39.62145 -38.87267 -36.90245 -35.81165 -34.90381 -33.92055 -31.80171 -31.27823 -30.51123 -29.80736 -27.37780 -25.85304 -25.21527 -23.92091 -23.72985 -22.37645 -22.28675 -21.37857 -20.61212 -19.03773 -18.63707 -18.29928 -17.76184 -17.38004 -16.94315 -16.73544 -16.41220 -16.19527 -15.85912 -15.49293 -15.31595 -15.26361 -14.88033 -14.77695 -14.53662 -14.33480 -14.14607 -14.08138 -13.98543 -13.27107 -13.21584 -13.04381 -12.85024 -12.77955 -12.72520 -12.63704 -12.54965 -12.32124 -12.10537 -12.02305 -11.88104 -11.77249 -11.60187 -11.55269 -11.39992 -10.64531 -10.56071 -10.35971 -10.12983 -9.75228 -8.58312 -7.85847 -5.42818 0.31264 1.24548 1.47986 1.49006 1.58290 2.07906 2.39388 2.50413 2.84916 3.24592 3.31171 3.69332 3.72610 3.80834 3.83430 3.97182 4.03930 4.13147 4.23305 4.29240 4.34398 4.37186 4.47014 4.57803 4.62643 4.66494 4.68452 4.73078 4.80949 4.82564 4.85788 4.93539 4.98613 5.03050 5.04537 5.12358 5.20484 5.28728 5.32661 5.36325 5.47456 5.53394 5.64972 5.79740 5.86984 6.22717 6.39319 6.46442 6.67620 6.92399 7.17704 7.84539 8.38772 9.17993 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.002545 C = 0.002359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.925914 B =10998.426994 C =11866.122456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 H 0.083 0.917 4 C -0.149 4.149 5 C 0.076 3.924 6 N -0.566 5.566 7 C 0.501 3.499 8 O -0.549 6.549 9 C 0.502 3.498 10 O -0.524 6.524 11 N -0.684 5.684 12 C 0.162 3.838 13 C -0.133 4.133 14 C 0.180 3.820 15 N -0.613 5.613 16 C -0.265 4.265 17 H 0.069 0.931 18 C -0.046 4.046 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.294 1.294 23 H -0.267 1.267 24 C 0.145 3.855 25 C -0.126 4.126 26 C 0.073 3.927 27 C 0.050 3.950 28 O -0.390 6.390 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.415 0.585 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.049 0.951 40 H -0.005 1.005 41 H 0.068 0.932 42 H 0.250 0.750 43 H 0.020 0.980 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.303 18.732 17.250 26.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.025 3.975 3 H 0.101 0.899 4 C -0.188 4.188 5 C -0.046 4.046 6 N -0.298 5.298 7 C 0.284 3.716 8 O -0.427 6.427 9 C 0.283 3.717 10 O -0.402 6.402 11 N -0.335 5.335 12 C 0.058 3.942 13 C -0.174 4.174 14 C 0.053 3.947 15 N -0.337 5.337 16 C -0.395 4.395 17 H 0.087 0.913 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.797 3.203 21 H -0.212 1.212 22 H -0.221 1.221 23 H -0.192 1.192 24 C 0.019 3.981 25 C -0.166 4.166 26 C -0.048 4.048 27 C -0.027 4.027 28 O -0.309 6.309 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.252 0.748 37 H 0.095 0.905 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.013 0.987 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.038 0.962 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.099 0.901 48 H 0.121 0.879 49 H 0.133 0.867 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.907 18.751 17.116 26.066 hybrid contribution -0.403 -1.144 -0.534 1.325 sum 5.504 17.607 16.582 24.804 Atomic orbital electron populations 1.21931 0.93513 1.02075 1.03341 1.21275 0.95621 0.96117 0.84466 0.89929 1.21943 0.96184 1.01455 0.99200 1.22696 0.93649 0.94602 0.93622 1.47759 1.60852 1.08700 1.12470 1.20222 0.79297 0.83776 0.88338 1.90712 1.46127 1.54257 1.51633 1.20275 0.79779 0.83091 0.88565 1.90592 1.42555 1.53032 1.54069 1.46015 1.59506 1.13936 1.14046 1.20903 0.95212 0.96937 0.81158 1.22377 0.96174 0.99206 0.99599 1.20638 0.94206 0.90654 0.89189 1.44289 1.00818 1.14592 1.73971 1.19497 1.10448 0.86808 1.22781 0.91323 1.26086 0.99195 1.00555 0.98333 1.70082 1.15765 1.31204 1.40944 0.85253 0.77976 0.79527 0.77553 1.21242 1.22055 1.19159 1.21032 0.85657 0.98024 0.93424 1.22194 0.98505 0.97209 0.98662 1.23078 1.00300 1.00987 0.80410 1.23033 0.81917 0.96694 1.01080 1.87503 1.35727 1.65912 1.41725 0.91272 0.89763 0.93901 0.94228 0.88176 0.88110 0.86293 0.74822 0.90532 0.92992 0.93255 0.98712 0.91367 0.94036 0.96154 0.91457 0.88936 0.91344 0.90137 0.87944 0.86652 0.89914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.43 71.98 0.68 -1.70 16 2 C 0.08 1.34 2.64 28.93 0.08 1.41 16 3 H 0.08 0.90 7.28 -2.39 -0.02 0.88 16 4 C -0.15 -2.96 4.68 29.77 0.14 -2.82 16 5 C 0.08 1.43 5.05 87.60 0.44 1.88 16 6 N -0.57 -12.24 2.54 -816.72 -2.07 -14.31 16 7 C 0.50 13.92 7.69 87.27 0.67 14.59 16 8 O -0.55 -17.20 15.78 -3.24 -0.05 -17.25 16 9 C 0.50 14.98 7.69 87.27 0.67 15.65 16 10 O -0.52 -16.91 11.96 -3.25 -0.04 -16.95 16 11 N -0.68 -20.00 5.07 -443.73 -2.25 -22.25 16 12 C 0.16 5.45 2.41 45.02 0.11 5.55 16 13 C -0.13 -5.40 5.65 30.67 0.17 -5.22 16 14 C 0.18 8.95 5.27 86.36 0.45 9.41 16 15 N -0.61 -30.64 3.00 -699.11 -2.10 -32.74 16 16 C -0.27 -14.46 9.55 84.03 0.80 -13.65 16 17 H 0.07 3.61 7.83 -2.91 -0.02 3.58 16 18 C -0.05 -2.58 5.32 84.86 0.45 -2.13 16 19 N -0.93 -55.30 10.60 21.65 0.23 -55.07 16 20 Si 0.97 44.69 29.56 68.60 2.03 46.71 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 C 0.14 5.73 6.52 86.36 0.56 6.29 16 25 C -0.13 -3.96 5.55 30.67 0.17 -3.79 16 26 C 0.07 1.17 6.56 86.49 0.57 1.74 16 27 C 0.05 0.61 6.49 72.42 0.47 1.08 16 28 O -0.39 -7.62 9.82 -144.89 -1.42 -9.05 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 1.07 8.13 -2.39 -0.02 1.05 16 31 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 1.08 7.89 -2.39 -0.02 1.06 16 33 H 0.10 1.73 8.13 -2.39 -0.02 1.71 16 34 H 0.10 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.12 2.76 4.78 -35.87 -0.17 2.58 16 36 H 0.41 10.95 8.09 -92.71 -0.75 10.20 16 37 H 0.08 2.78 7.58 -2.38 -0.02 2.76 16 38 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 39 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 40 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.07 3.90 5.90 -2.39 -0.01 3.88 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 44 H 0.07 2.54 7.93 -2.39 -0.02 2.53 16 45 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 47 H 0.08 1.61 6.99 -2.39 -0.02 1.59 16 48 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.12 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.08 0.59 7.21 -2.39 -0.02 0.57 16 Total: -1.00 -69.64 385.73 0.80 -68.84 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.03 Total: 23.76 kcal Atomic # 6 Polarization: 21.85 SS G_CDS: 6.44 Total: 28.29 kcal Atomic # 7 Polarization: -118.18 SS G_CDS: -6.19 Total: -124.37 kcal Atomic # 8 Polarization: -41.73 SS G_CDS: -1.51 Total: -43.25 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -69.64 0.80 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001351155009.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.836 kcal (2) G-P(sol) polarization free energy of solvation -69.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds